mRNA_H-elongata_contig20808.5993.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE) HSP 1 Score: 240 bits (612), Expect = 1.660e-74 Identity = 111/209 (53.11%), Postives = 154/209 (73.68%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
K E GQKV G MRS+S ENVT+V TISA G P +IYK QR+Q+DW+ + PPN A +S F+ GTVF++YI+DF++QL L NG PHVL+L+ HASH+T++ +KL + L IVL+Q+PSH+SH+ QPLDV +FGS+K +TK L+ FP +GGR+P K DM+ ++G+A++ SFS ++N +SF G GLWPVD + A+GRL+
Sbjct: 182 KVITESGQKVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEERNTSSFAGAGLWPVDGERAMGRLQ 390
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE) HSP 1 Score: 241 bits (616), Expect = 4.510e-73 Identity = 112/209 (53.59%), Postives = 156/209 (74.64%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
K AE GQKV G MRS+S +NVT+V TISA G P +IYK QR+Q+DW+ + PPN A T+S F+ GTVF++YI+DF++QL L NG PHVL+L+ HASH+T++ +KL + L IVL+Q+PSH+SH+ QPLDV +FGS+K +TK L+ FP +GGR+P K DM+ ++G+A++ SFS ++N +SF G GLWPVD + A+GRL+
Sbjct: 190 KVIAESGQKVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKWEITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFAGAGLWPVDGERAMGRLQ 398
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE) HSP 1 Score: 228 bits (582), Expect = 5.330e-73 Identity = 105/200 (52.50%), Postives = 146/200 (73.00%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVD 600
K AE GQKV G MRS+S ENVT+V TIS G P +IYK QR+Q+DW+ + PPN A T+S F+ G F++Y++DF++QL L NG PHVL L+ HASH+T++ +KL ++L IVL+Q+PSH+SH+ QPLDV +FGS+K +TK L+ FP +GGR+P K DM+ ++G+A++ SFS ++N +SF G GLWPVD
Sbjct: 2 KVIAESGQKVVGAMRSNSRENVTVVVTISTAGATLAPWIIYKGQRLQADWVEGRNGPPNARLAVTDSSFMQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEEQNISSFVGAGLWPVD 201
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI) HSP 1 Score: 243 bits (619), Expect = 5.340e-73 Identity = 114/209 (54.55%), Postives = 155/209 (74.16%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
K AE GQKV G MRS+S E VT+V TISA G P +IYK QR+Q+DW+ + PPN A T+S F+ GTVF++YI+DF++QL L NG PHVL+L+ HASH+T++ IKL + L IVL+Q+PSH+SH+ QPLDV +FGS+K +TK L+ FP +GGR+P K DM+ ++G+A++ SFS Q+N +SF G GLWPVD + A+GRL+
Sbjct: 182 KAIAESGQKVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPLDVGSFGSFKREITKVLSAFPARNGGRVPAKSDMLGILGDAWLRSFSEQQNISSFAGAGLWPVDGERAMGRLQ 390
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE) HSP 1 Score: 231 bits (589), Expect = 5.350e-71 Identity = 114/201 (56.72%), Postives = 145/201 (72.14%), Query Frame = 1
Query: 25 KVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
KV G MRS+S EN T+VATISADG + P +I+K QR+Q+DW + Y T+ F+ G +F+ Y+KDF+KQL L +GKPH+LLL+ HASH++ + IKL L I+LFQLPSHTSHITQPLDV AFGS+K VT+ L +F RN GG LPLKRDM VI +A+ SF+P+ NK+SF G GLWPV+ + ALGRLK
Sbjct: 203 KVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGLEGAKYTCTDYSFMQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPLDVVAFGSFKKSVTRVLASFYRNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLK 403
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5KH00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH00_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.020e-70 Identity = 113/205 (55.12%), Postives = 141/205 (68.78%), Query Frame = 1
Query: 10 AEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRL 624
AE GQ V QMRS+S EN T++ TI+A G V P +I+K QR DW+ + PP TY TES F+ G VF+ YI DF++QL K L +GKPHVL+L+ HASH++ + ++L + L I L QLPSH SHITQPLDVA FG +K +TK + FP HGG LP KRDM VIG+A+ SF+P NKASF G GLWPVD + AL RL
Sbjct: 111 AERGQPVVPQMRSTSRENCTIITTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL 315
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5J9B8_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B8_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.130e-70 Identity = 112/209 (53.59%), Postives = 148/209 (70.81%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
KT AE GQ V MRS+S EN T+V TISA+G + P +I++ QR+Q DW + P + Y T+S F+ G VF+ Y KDF+KQL + +GKPH L+L++HAS+++++ IKL +L I+LFQLPSHTSHITQPLDV AFG++K VT L + +GG LPLKRD+ VI A+ SF+P++NKASF GVGLWPVD D AL RL+
Sbjct: 2 KTFAEAGQTVVESMRSNSRENTTVVTTISANGATWAPTIIFRGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIKYFKDFHKQLDDRGVLDGKPHTLVLDEHASYVSYEVIKLAMELNIILFQLPSHTSHITQPLDVVAFGTFKKEVTTVLQDYYHANGGLLPLKRDVPGVIAAAWQRSFTPERNKASFGGVGLWPVDMDRALTRLQ 210
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE) HSP 1 Score: 226 bits (577), Expect = 6.510e-70 Identity = 112/209 (53.59%), Postives = 147/209 (70.33%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
K AE GQKV MRS+S EN T+V TISA+G + P +I+K QR+Q DW + P + Y T+S F+ G VF+ Y+KDF+KQL + +GKPH+L+L+ HASH++++ IKL L I+LF+LPSHTSHITQPLDV AFG++K VTK L + +GG LPLKRD+ VI A+ S +P++NKASF G GLWPVD D AL RL+
Sbjct: 2 KAFAEAGQKVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPLDVVAFGTFKKEVTKVLQDYYHANGGLLPLKRDVPGVIAAAWQNSLTPERNKASFGGAGLWPVDMDRALTRLQ 210
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5J9Z8_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9Z8_9PHAE) HSP 1 Score: 225 bits (573), Expect = 1.280e-69 Identity = 108/195 (55.38%), Postives = 135/195 (69.23%), Query Frame = 1
Query: 40 MRSSSWENVTLVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRL 624
MRS+S EN T+V TI+A G V P +I+K QR DW+ + PP TY TES F+ G VF+ YI DF++QL K L +GKPHVL+L+ HASH++ + ++L + L I L QLPSH SHITQPLDVA FG +K +TK + FP HGG LP KRDM VIG+A+ SF+P NKASF G GLWPVD + AL RL
Sbjct: 1 MRSTSRENCTIVTTINAAGAVLAPTIIFKGQRFNGDWIVDQDGPPGATYTCTESSFMCGDVFIKYIMDFHEQLRKRNLLDGKPHVLVLDGHASHVSLEVVELARSLNIHLVQLPSHMSHITQPLDVAGFGCFKKELTKAIQAFPATHGGALPRKRDMASVIGQAWSTSFTPDINKASFAGAGLWPVDKERALSRL 195
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Match: A0A6H5JYS0_9PHAE (DDE-1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYS0_9PHAE) HSP 1 Score: 229 bits (584), Expect = 2.540e-69 Identity = 114/210 (54.29%), Postives = 146/210 (69.52%), Query Frame = 1
Query: 1 KTTAEIGQKVTGQMRSSSWENVT-LVATISADGRVFEPLVIYKEQRVQSDWMTPESAPPNVTYATTESLFI*GTVFLDYIKDFNKQLGKLMLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVAAFGSYKSRVTKTLTTFPRNHGGRLPLKRDMVIVIGEAFIASFSPQKNKASFEGVGLWPVDADLALGRLK 627
K AE GQKV G MRS+S EN T +V TISADG + P +I+K R+Q+DW + P Y T+S F+ G VF+ Y+KDF+KQ G+ L +GKPH+LLL+ H+SH+ + +L L I+L QLPSHTSHITQPLDV AFG +K VT+ L +F N GG LPLKRDM VI +A+ SF+P+ NK+SF G GLWPV+ + ALGRLK
Sbjct: 156 KAFAESGQKVVGSMRSNSRENTTTVVVTISADGHTWAPTIIFKGHRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQFGERGLLDGKPHILLLDGHSSHVRVEVTRLAMNLKIILIQLPSHTSHITQPLDVVAFGRFKKSVTRVLASFYHNSGGLLPLKRDMPGVIADAWKLSFTPEINKSSFAGAGLWPVNKERALGRLK 365 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20808.5993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20808.5993.1 >prot_H-elongata_contig20808.5993.1 ID=prot_H-elongata_contig20808.5993.1|Name=mRNA_H-elongata_contig20808.5993.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp MLFNGKPHVLLLNDHASHMTFQAIKLEKKLGIVLFQLPSHTSHITQPLDVback to top mRNA from alignment at H-elongata_contig20808:5925..6551- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20808.5993.1 ID=mRNA_H-elongata_contig20808.5993.1|Name=mRNA_H-elongata_contig20808.5993.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=627bp|location=Sequence derived from alignment at H-elongata_contig20808:5925..6551- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20808:5925..6551- >mRNA_H-elongata_contig20808.5993.1 ID=mRNA_H-elongata_contig20808.5993.1|Name=mRNA_H-elongata_contig20808.5993.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig20808:5925..6551- (Himanthalia elongata Himel1 dioecious)back to top |