mRNA_H-elongata_contig208044.5992.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208044.5992.1
Unique NamemRNA_H-elongata_contig208044.5992.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A7S2Y0C1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0C1_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-19
Identity = 43/56 (76.79%), Postives = 53/56 (94.64%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            YGIGA+DVANAF +TSVG+KT+T+RQAVVFAGIFEFLGA+L  +HV++T+RKGIAD
Sbjct:   26 YGIGANDVANAF-STSVGSKTLTMRQAVVFAGIFEFLGAVLFESHVVKTVRKGIAD 80
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BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A6U1NDP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDP7_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.470e-19
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            YGIGA+DVANAF +TSVGAKT+TL+QAV+  GIFEFLGA L G+HV +TIRKGIAD
Sbjct:   25 YGIGANDVANAF-STSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79
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BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A6H5JIN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN4_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 1.730e-18
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            +GIGA+DVANAF ATSVGAK +T++QAV+ AGIFEFLGA+ LG+HV +TIR GIAD
Sbjct:   35 FGIGANDVANAF-ATSVGAKALTIKQAVILAGIFEFLGAVFLGSHVTKTIRSGIAD 89
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BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: D7G5U7_ECTSI (High affinity phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U7_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 2.170e-18
Identity = 42/56 (75.00%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            +GIGA+DVANAF ATSVGAK +T++QAVV AG+FEFLGA+ LG+HV +TIRKGIAD
Sbjct:   60 FGIGANDVANAF-ATSVGAKALTIKQAVVLAGVFEFLGAVFLGSHVTKTIRKGIAD 114
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BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A7S3Y1S0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1S0_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.600e-17
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            YGIGA+DVANAF ATSVGAKT++++ AV+ A IFEF GA+LLG+HV +TIRKGIAD
Sbjct:   33 YGIGANDVANAF-ATSVGAKTLSVKHAVILAAIFEFGGAVLLGSHVTKTIRKGIAD 87
[Close]
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A7S2V1L4_9STRA (Phosphate transporter n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1L4_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.770e-17
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            YGIGA+DVANAF +TSVGAKT+TL+QAV+  GIFEFLGA L G+HV +TIRKGIAD
Sbjct:   25 YGIGANDVANAF-STSVGAKTLTLKQAVILGGIFEFLGAFLFGSHVTKTIRKGIAD 79
[Close]
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: D7G0K9_ECTSI (Phosphate transporter n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0K9_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 1.590e-16
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            +GIGA+DVANAF ATSVGAK +T++QAVV AGIFEFLGA+ LG+HV +TIR GIAD
Sbjct:   35 FGIGANDVANAF-ATSVGAKALTIKQAVVLAGIFEFLGAVFLGSHVTKTIRSGIAD 89
[Close]
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: D7FZJ7_ECTSI (Phosphate transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZJ7_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 2.180e-16
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            +GIGA+DVANAF ATSVGAK +TLRQAVV AGIFEFLGA+ LG+HV  TIR G AD
Sbjct:   35 FGIGANDVANAF-ATSVGAKALTLRQAVVLAGIFEFLGAVFLGSHVTSTIRSGTAD 89
[Close]
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A6H5JNE7_9PHAE (Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNE7_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.040e-15
Identity = 41/56 (73.21%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            +GIGA+DVANAF ATSVGAK +T++QAVV A IFEF GA+ LG+HV +TIRKGIAD
Sbjct:   34 FGIGANDVANAF-ATSVGAKALTIKQAVVLAAIFEFAGAVFLGSHVTKTIRKGIAD 88
[Close]
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Match: A0A6S9IV20_HETAK (Phosphate transporter n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IV20_HETAK)

HSP 1 Score: 80.9 bits (198), Expect = 1.420e-15
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:  157 YGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVMETIRKGIAD 324
            YGIGA+DVANAF ATSVGAKT++++ AV+ A IFEF GA+LLG+HV +TIRKGIAD
Sbjct:   33 YGIGANDVANAF-ATSVGAKTLSVKHAVILAAIFEFGGAVLLGSHVTKTIRKGIAD 87
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208044.5992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2Y0C1_9STRA1.340e-1976.79Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6U1NDP7_9STRA6.470e-1976.79Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5JIN4_9PHAE1.730e-1873.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5U7_ECTSI2.170e-1875.00High affinity phosphate transporter n=1 Tax=Ectoca... [more]
A0A7S3Y1S0_HETAK1.600e-1773.21Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2V1L4_9STRA1.770e-1776.79Phosphate transporter n=1 Tax=Fibrocapsa japonica ... [more]
D7G0K9_ECTSI1.590e-1675.00Phosphate transporter n=2 Tax=Ectocarpus siliculos... [more]
D7FZJ7_ECTSI2.180e-1676.79Phosphate transporter n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5JNE7_9PHAE1.040e-1573.21Phosphate transporter n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A6S9IV20_HETAK1.420e-1573.21Phosphate transporter n=3 Tax=Heterosigma akashiwo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208044contigH-elongata_contig208044:442..766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue6.3e-14
Seed eggNOG ortholog2880.D7G5U7
Preferred namePHO89
KEGG koko:K01280,ko:K03306,ko:K14640
KEGG TC2.A.20,2.A.20.2
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005436,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006814,GO:0006817,GO:0006820,GO:0008150,GO:0008324,GO:0012505,GO:0015075,GO:0015077,GO:0015081,GO:0015291,GO:0015293,GO:0015294,GO:0015318,GO:0015319,GO:0015370,GO:0015672,GO:0015698,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0030001,GO:0031224,GO:0031226,GO:0034220,GO:0035435,GO:0035725,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046873,GO:0051179,GO:0051234,GO:0055085,GO:0071944,GO:0098655,GO:0098656,GO:0098660,GO:0098661,GO:0098662
EggNOG free text desc.inorganic phosphate transmembrane transporter activity
EggNOG OGsCOG0306@1,KOG2493@2759
EC3.4.14.10
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko02000,ko03110
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionPhosphate transporter
Ec32 orthologEc-13_001380.2
Exons1
Model size326
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930163.2605424-CDS-H-elongata_contig208044:441..7651622930163.2605424-CDS-H-elongata_contig208044:441..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208044 442..765 +
1691679305.2471695-CDS-H-elongata_contig208044:441..7651691679305.2471695-CDS-H-elongata_contig208044:441..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208044 442..765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208044.5992.1prot_H-elongata_contig208044.5992.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208044 442..765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208044.5992.1

>prot_H-elongata_contig208044.5992.1 ID=prot_H-elongata_contig208044.5992.1|Name=mRNA_H-elongata_contig208044.5992.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=108bp
QSHLGPLFFYCAPLAFINILLITSKSASLFMIPRVSFSGYSSLERSAPSS
PPYGIGASDVANAFFATSVGAKTITLRQAVVFAGIFEFLGALLLGNHVME
TIRKGIAD
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mRNA from alignment at H-elongata_contig208044:442..766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208044.5992.1 ID=mRNA_H-elongata_contig208044.5992.1|Name=mRNA_H-elongata_contig208044.5992.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=325bp|location=Sequence derived from alignment at H-elongata_contig208044:442..766+ (Himanthalia elongata Himel1 dioecious)
CAATCTCATCTCGGGCCATTATTTTTTTACTGCGCTCCCCTTGCCTTCAT
TAACATATTGCTTATCACCTCGAAGAGCGCATCCTTGTTCATGATCCCAC
GGGTCAGTTTCTCTGGATACTCGTCGTTGGAGCGATCGGCGCCTTCTTCG
CCACCCTATGGAATCGGTGCCAGCGATGTGGCTAACGCCTTCTTCGCTAC
CTCGGTCGGAGCTAAGACCATCACGCTGAGGCAGGCTGTAGTTTTTGCCG
GCATCTTCGAATTCCTTGGAGCCCTTCTTCTGGGCAATCACGTCATGGAA
ACCATCCGGAAGGGAATAGCTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig208044:442..766+

>mRNA_H-elongata_contig208044.5992.1 ID=mRNA_H-elongata_contig208044.5992.1|Name=mRNA_H-elongata_contig208044.5992.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=648bp|location=Sequence derived from alignment at H-elongata_contig208044:442..766+ (Himanthalia elongata Himel1 dioecious)
CAATCTCATCTCGGGCCATTATTTTTTTACTGCGCTCCCCTTGCCTTCAT
TAACATATTGCTTATCACCTCGAAGAGCGCATCCTTGTTCATGATCCCAC
GGGTCAGTTTCTCTGGATACTCGTCGTTGGAGCGATCGGCGCCTTCTTCG
CCACCCTATGGAATCGGTGCCAGCGATGTGGCTAACGCCTTCTTCGCTAC
CTCGGTCGGAGCTAAGACCATCACGCTGAGGCAGGCTGTAGTTTTTGCCG
GCATCTTCGAATTCCTTGGAGCCCTTCTTCTGGGCAATCACGTCATGGAA
ACCATCCGGAAGGGAATAGCTGATCAATCTCATCTCGGGCCATTATTTTT
TTACTGCGCTCCCCTTGCCTTCATTAACATATTGCTTATCACCTCGAAGA
GCGCATCCTTGTTCATGATCCCACGGGTCAGTTTCTCTGGATACTCGTCG
TTGGAGCGATCGGCGCCTTCTTCGCCACCCTATGGAATCGGTGCCAGCGA
TGTGGCTAACGCCTTCTTCGCTACCTCGGTCGGAGCTAAGACCATCACGC
TGAGGCAGGCTGTAGTTTTTGCCGGCATCTTCGAATTCCTTGGAGCCCTT
CTTCTGGGCAATCACGTCATGGAAACCATCCGGAAGGGAATAGCTGAT
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