mRNA_H-elongata_contig20802.5990.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20802.5990.1
Unique NamemRNA_H-elongata_contig20802.5990.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A6H5K078_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K078_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 2.120e-48
Identity = 79/84 (94.05%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            PVQLTFGGRS G+THGLADFVAQEEMDRYRGFWWSLDSS IAFTEVDERHIPSFRIMHQGKD+VGEGAQEDHHYPFAGK+NPKV
Sbjct:  284 PVQLTFGGRSRGVTHGLADFVAQEEMDRYRGFWWSLDSSSIAFTEVDERHIPSFRIMHQGKDTVGEGAQEDHHYPFAGKDNPKV 367          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A7S0FCE8_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0FCE8_9DINO)

HSP 1 Score: 128 bits (321), Expect = 1.410e-34
Identity = 58/84 (69.05%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            P  L  G R  G+THGLADF+AQEE+DRY GFW S D   +AF EVDE HIP FRIMH G DSVG+GAQEDH YPFAG+ NPKV
Sbjct:   56 PRALMAGARGTGITHGLADFLAQEELDRYEGFWISPDGGQVAFEEVDETHIPEFRIMHSGSDSVGDGAQEDHRYPFAGEPNPKV 139          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A3B8VIW7_9CHLR (S9 family peptidase (Fragment) n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A3B8VIW7_9CHLR)

HSP 1 Score: 126 bits (316), Expect = 4.260e-34
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKEN 243
            P Q+T G R  G THGLA+++AQEEM R  GFWWS D S IAFTEVDE HIP +RI+HQGKD VGEGAQEDH YPFAG+ N
Sbjct:  164 PRQITSGARGTGKTHGLAEYIAQEEMGRGSGFWWSRDGSHIAFTEVDETHIPVYRIVHQGKDQVGEGAQEDHRYPFAGEAN 244          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A7S4PWF3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PWF3_9DINO)

HSP 1 Score: 132 bits (333), Expect = 4.570e-34
Identity = 60/84 (71.43%), Postives = 68/84 (80.95%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            P  LT G R  G+THGLADF+AQEE+DRY GFW S DSS +AF EVDE+HIP FRIMH G ++VGEGAQEDH YPFAG+ NPKV
Sbjct:  321 PRALTAGARGTGVTHGLADFLAQEELDRYEGFWISPDSSQVAFEEVDEQHIPEFRIMHSGSEAVGEGAQEDHRYPFAGRANPKV 404          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A7S1DWI9_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DWI9_HEMAN)

HSP 1 Score: 120 bits (302), Expect = 1.320e-33
Identity = 53/78 (67.95%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAG 234
            P+QLT G R + +T+GLAD+VAQEEM RY G+W S DS+L+AF +VDE  +P +RIMHQG D VGEGAQEDHHYPFAG
Sbjct:   38 PLQLTTGSRDSAVTNGLADYVAQEEMGRYEGYWISPDSTLVAFEQVDESGVPEYRIMHQGSDKVGEGAQEDHHYPFAG 115          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A356KCX9_9BACT (S9 family peptidase (Fragment) n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A356KCX9_9BACT)

HSP 1 Score: 124 bits (311), Expect = 1.830e-33
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAG 234
            P Q+T G R  G THGLAD+VA+EEM RY G+WWS D   +AFTEVD+ HIP +RI+HQGKD+VGEGAQEDH YPFAG
Sbjct:  163 PRQVTEGARGTGRTHGLADYVAEEEMSRYAGYWWSHDGEWLAFTEVDDTHIPVYRIVHQGKDAVGEGAQEDHRYPFAG 240          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A438HWX4_VITVI (Dipeptidyl aminopeptidase 4 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HWX4_VITVI)

HSP 1 Score: 127 bits (319), Expect = 1.920e-33
Identity = 59/84 (70.24%), Postives = 64/84 (76.19%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            P QLTFG   N LTHGLA+++AQEEMDR  G+WWSLDS  IAFT+VD   IP FRIMHQGK SVG  AQEDH YPFAG  N KV
Sbjct:  200 PRQLTFGANGNTLTHGLAEYIAQEEMDRKNGYWWSLDSRFIAFTQVDSSEIPLFRIMHQGKSSVGADAQEDHAYPFAGASNVKV 283          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A2R5GLV6_9STRA (Dipeptidyl peptidase 9 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GLV6_9STRA)

HSP 1 Score: 130 bits (327), Expect = 3.020e-33
Identity = 59/84 (70.24%), Postives = 65/84 (77.38%), Query Frame = 1
Query:    1 PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            P +LT+  R NG T GLADF+AQEEMDRY GFWWS DS  IAF  VDE HIP +RIMHQGK+ VG+ AQEDH YPFAGK NP V
Sbjct: 1067 PQRLTYDSRGNGKTSGLADFIAQEEMDRYHGFWWSHDSQHIAFELVDESHIPEYRIMHQGKEEVGDSAQEDHRYPFAGKANPHV 1150          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: A0A022QD77_ERYGU (Uncharacterized protein n=1 Tax=Erythranthe guttata TaxID=4155 RepID=A0A022QD77_ERYGU)

HSP 1 Score: 130 bits (326), Expect = 3.770e-33
Identity = 60/82 (73.17%), Postives = 64/82 (78.05%), Query Frame = 1
Query:    7 QLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            QLT G   N +THGLA+F+AQEEMDR  G+WWSLDS LIAFTEVD   IP FRIMHQGKDSVG  AQEDH YPFAG  N KV
Sbjct:  180 QLTLGANENAITHGLAEFIAQEEMDRKSGYWWSLDSKLIAFTEVDSSEIPLFRIMHQGKDSVGSDAQEDHAYPFAGASNVKV 261          
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Match: X0W5B8_9ZZZZ (DPPIV_N domain-containing protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0W5B8_9ZZZZ)

HSP 1 Score: 124 bits (310), Expect = 4.510e-33
Identity = 55/82 (67.07%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    7 QLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERHIPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKV 252
            QLT G R  G THGLA+++AQEEM R+ GFWWS D   +AF EVDE HI  +RI+HQGKD VGEGAQEDH YPFAG EN +V
Sbjct:    1 QLTSGARGTGKTHGLAEYIAQEEMGRHHGFWWSKDGKWLAFAEVDETHISRYRIVHQGKDEVGEGAQEDHGYPFAGTENARV 82          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20802.5990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K078_9PHAE2.120e-4894.05Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S0FCE8_9DINO1.410e-3469.05Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A3B8VIW7_9CHLR4.260e-3470.37S9 family peptidase (Fragment) n=1 Tax=Dehalococco... [more]
A0A7S4PWF3_9DINO4.570e-3471.43Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S1DWI9_HEMAN1.320e-3367.95Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A356KCX9_9BACT1.830e-3369.23S9 family peptidase (Fragment) n=1 Tax=Planctomyce... [more]
A0A438HWX4_VITVI1.920e-3370.24Dipeptidyl aminopeptidase 4 n=1 Tax=Vitis vinifera... [more]
A0A2R5GLV6_9STRA3.020e-3370.24Dipeptidyl peptidase 9 n=1 Tax=Hondaea fermentalgi... [more]
A0A022QD77_ERYGU3.770e-3373.17Uncharacterized protein n=1 Tax=Erythranthe guttat... [more]
X0W5B8_9ZZZZ4.510e-3367.07DPPIV_N domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20802contigH-elongata_contig20802:313..765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score172.9
Seed ortholog evalue6.7e-41
Seed eggNOG ortholog2880.D7FUX6
KEGG koko:K01278
KEGG Pathwayko04974,map04974
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.serine-type peptidase activity
EggNOG OGsCOG1506@1,KOG2281@2759
EC3.4.14.5
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size273
Cds size273
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.997378-CDS-H-elongata_contig20802:312..4501622930162.997378-CDS-H-elongata_contig20802:312..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20802 313..450 -
1691679305.15399-CDS-H-elongata_contig20802:312..4501691679305.15399-CDS-H-elongata_contig20802:312..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20802 313..450 -
1622930163.014319-CDS-H-elongata_contig20802:630..7651622930163.014319-CDS-H-elongata_contig20802:630..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20802 631..765 -
1691679305.1637812-CDS-H-elongata_contig20802:630..7651691679305.1637812-CDS-H-elongata_contig20802:630..765Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20802 631..765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20802.5990.1prot_H-elongata_contig20802.5990.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20802 313..765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20802.5990.1

>prot_H-elongata_contig20802.5990.1 ID=prot_H-elongata_contig20802.5990.1|Name=mRNA_H-elongata_contig20802.5990.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=91bp
PVQLTFGGRSNGLTHGLADFVAQEEMDRYRGFWWSLDSSLIAFTEVDERH
IPSFRIMHQGKDSVGEGAQEDHHYPFAGKENPKVMHDEPP*
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mRNA from alignment at H-elongata_contig20802:313..765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20802.5990.1 ID=mRNA_H-elongata_contig20802.5990.1|Name=mRNA_H-elongata_contig20802.5990.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=453bp|location=Sequence derived from alignment at H-elongata_contig20802:313..765- (Himanthalia elongata Himel1 dioecious)
CCCGTCCAGCTGACCTTTGGTGGTCGCAGCAACGGATTGACTCACGGCCT GGCGGACTTCGTGGCACAGGAAGAGATGGATCGTTACAGAGGGTTTTGGT GGTCCCTTGACAGTAGCTTGATCGCCTTTACAGAGGTGAGAGGGCTTTAG ATACTTGTTTTTAGTGGGGCGGGTTGGGAGGGGGAGGAGCTGATTCTCTG AACCTCTGGTGGGGTATACAACAAGAACAGACCCCCCCCCCGTTATTCGC CACCCATACTTTCTGGCCAACCTCCCCCCCCCCTCTCCCCTCCTTCTTGC TGCTTGACCGGGAAGGTGGACGAGAGACACATCCCGTCGTTTCGGATCAT GCACCAAGGGAAGGACAGCGTGGGAGAGGGAGCGCAGGAGGATCATCACT ATCCCTTCGCGGGAAAGGAAAACCCAAAGGTGATGCACGATGAGCCGCCC TAG
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Coding sequence (CDS) from alignment at H-elongata_contig20802:313..765-

>mRNA_H-elongata_contig20802.5990.1 ID=mRNA_H-elongata_contig20802.5990.1|Name=mRNA_H-elongata_contig20802.5990.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=546bp|location=Sequence derived from alignment at H-elongata_contig20802:313..765- (Himanthalia elongata Himel1 dioecious)
CCCGTCCAGCTGACCTTTGGTGGTCGCAGCAACGGATTGACTCACGGCCT
GGCGGACTTCGTGGCACAGGAAGAGATGGATCGTTACAGAGGGTTTTGGT
GGTCCCTTGACAGTAGCTTGATCGCCTTTACAGAGCCCGTCCAGCTGACC
TTTGGTGGTCGCAGCAACGGATTGACTCACGGCCTGGCGGACTTCGTGGC
ACAGGAAGAGATGGATCGTTACAGAGGGTTTTGGTGGTCCCTTGACAGTA
GCTTGATCGCCTTTACAGAGGTGGACGAGAGACACATCCCGTCGTTTCGG
ATCATGCACCAAGGGAAGGACAGCGTGGGAGAGGGAGCGCAGGAGGATCA
TCACTATCCCTTCGCGGGAAAGGAAAACCCAAAGGTGATGCACGATGAGC
CGCCCTAGGTGGACGAGAGACACATCCCGTCGTTTCGGATCATGCACCAA
GGGAAGGACAGCGTGGGAGAGGGAGCGCAGGAGGATCATCACTATCCCTT
CGCGGGAAAGGAAAACCCAAAGGTGATGCACGATGAGCCGCCCTAG
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