mRNA_H-elongata_contig208004.5989.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig208004.5989.1
Unique NamemRNA_H-elongata_contig208004.5989.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig208004.5989.1 vs. uniprot
Match: A0A6H5KWL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL3_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 8.820e-27
Identity = 80/166 (48.19%), Postives = 104/166 (62.65%), Query Frame = 1 
Query:  352 VETESEQSVVGSIVITSDEPPVCVATNTCEGVAQASLEDSLGRNGTLNVTSVTVT-TSPVGD-GRR-LLFVTGAASLPLPTVVRSGGFLRASTSRHLQSSGANETETDIDFISAPVDSSDLTGAAQAAEQINALADGGIENLLEELELPLDSEVDISGMKYVECET 840
            V+ E + S++GSI I SDE P C     CE V +  LE SLGRNGT+NVT VTVT T+   D GRR LLFV   A   +         LR S     + +  N+TET+I++ S+P  SS+LT A QAAEQINALA+ GI +LL+E+ LP D+EV+I   K+V+  T
Sbjct:  579 VDDEPDGSLIGSITIISDEAPECAGAGNCEEVVEDGLESSLGRNGTVNVTDVTVTSTAAAADAGRRVLLFV---ADGDVADDSSRNRLLRGSRQLQEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVEIGVTKFVQLGT 741
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BLAST of mRNA_H-elongata_contig208004.5989.1 vs. uniprot
Match: D8LBV2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV2_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.220e-25
Identity = 82/169 (48.52%), Postives = 106/169 (62.72%), Query Frame = 1 
Query:  352 VETESEQSVVGSIVITSDEPPVCVATNTCEGVAQASLEDSLGRNGTLNVTSVTVT-TSPVGD-GRR-LLFVTGAASLPLPTVVRSGGFLRASTSRHLQS---SGANETETDIDFISAPVDSSDLTGAAQAAEQINALADGGIENLLEELELPLDSEVDISGMKYVECET 840
            V+ E + S++GSI I SDE P C     CE V +  LE SLGRNGT+NVT VTVT T+   D GRR LLFV   A   +         LR S  R LQ    +  N+TET+I++ S+P  SS+LT A QAAEQINALA+ GI +LL+E+ LP D+EV++   K+V+  T
Sbjct:  587 VDDEPDGSLIGSITIISDEEPECEGAGNCEEVVEDGLESSLGRNGTVNVTDVTVTSTAAAADAGRRVLLFV---ADGDVADNSSRNRLLRGS--RQLQEEEEAAGNQTETEIEYESSPDQSSNLTEAQQAAEQINALAETGIADLLDEMGLPPDTEVELGVTKFVQLGT 750
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig208004.5989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KWL3_9PHAE8.820e-2748.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBV2_ECTSI3.220e-2548.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig208004contigH-elongata_contig208004:13..852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_002580.1
Exons1
Model size840
Cds size840
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.9267266-CDS-H-elongata_contig208004:12..8521622930162.9267266-CDS-H-elongata_contig208004:12..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208004 13..852 +
1691679305.1448684-CDS-H-elongata_contig208004:12..8521691679305.1448684-CDS-H-elongata_contig208004:12..852Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig208004 13..852 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig208004.5989.1prot_H-elongata_contig208004.5989.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig208004 13..852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig208004.5989.1

>prot_H-elongata_contig208004.5989.1 ID=prot_H-elongata_contig208004.5989.1|Name=mRNA_H-elongata_contig208004.5989.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=280bp
TLAPGATLAPGATLAPGATLAPGATLAPGATLAPVATLAPGETLTPFFPS
VSPTTFTSTPSMMFSVAPSTAPTGAPTGAPSGMWTGMPTATPTGAPSEQH
TEAPTVSPTVAPTATLMVETESEQSVVGSIVITSDEPPVCVATNTCEGVA
QASLEDSLGRNGTLNVTSVTVTTSPVGDGRRLLFVTGAASLPLPTVVRSG
GFLRASTSRHLQSSGANETETDIDFISAPVDSSDLTGAAQAAEQINALAD
GGIENLLEELELPLDSEVDISGMKYVECET
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mRNA from alignment at H-elongata_contig208004:13..852+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig208004.5989.1 ID=mRNA_H-elongata_contig208004.5989.1|Name=mRNA_H-elongata_contig208004.5989.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=840bp|location=Sequence derived from alignment at H-elongata_contig208004:13..852+ (Himanthalia elongata Himel1 dioecious)
ACACTCGCACCCGGCGCGACACTGGCACCCGGAGCGACACTGGCACCCGG
AGCGACACTGGCACCCGGAGCGACACTGGCACCCGGAGCGACTCTTGCCC
CGGTCGCGACTTTGGCACCAGGTGAAACCCTTACTCCTTTCTTCCCCTCT
GTGAGCCCCACCACATTCACTTCTACGCCGTCGATGATGTTTTCGGTGGC
ACCTAGTACAGCACCAACGGGAGCCCCGACTGGAGCGCCAAGCGGGATGT
GGACCGGAATGCCAACTGCGACGCCAACGGGCGCGCCAAGTGAACAACAC
ACAGAAGCGCCGACGGTGTCTCCCACAGTAGCTCCGACCGCAACCTTGAT
GGTCGAAACAGAGTCCGAACAATCAGTGGTCGGAAGCATCGTGATCACCT
CGGACGAGCCGCCTGTCTGCGTGGCGACCAATACTTGCGAAGGCGTGGCG
CAGGCCTCCCTGGAAGATTCACTGGGTCGCAACGGTACTCTAAACGTGAC
GAGCGTTACGGTGACGACAAGCCCCGTCGGCGACGGCCGCAGATTGCTAT
TCGTCACGGGGGCGGCGTCGTTACCATTACCCACCGTAGTTCGAAGTGGT
GGTTTTCTTCGGGCGTCGACCTCAAGGCACCTCCAGAGCAGCGGTGCGAA
CGAGACAGAGACTGACATCGATTTTATCTCTGCGCCTGTAGATTCATCCG
ACTTGACTGGGGCGGCACAGGCGGCGGAACAAATAAACGCTCTGGCGGAC
GGAGGAATCGAGAACCTGCTGGAGGAGCTCGAACTGCCGCTGGATTCTGA
AGTTGATATCAGCGGGATGAAGTACGTCGAATGTGAGACA
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Coding sequence (CDS) from alignment at H-elongata_contig208004:13..852+

>mRNA_H-elongata_contig208004.5989.1 ID=mRNA_H-elongata_contig208004.5989.1|Name=mRNA_H-elongata_contig208004.5989.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1680bp|location=Sequence derived from alignment at H-elongata_contig208004:13..852+ (Himanthalia elongata Himel1 dioecious)
ACACTCGCACCCGGCGCGACACTGGCACCCGGAGCGACACTGGCACCCGG
AGCGACACTGGCACCCGGAGCGACACTGGCACCCGGAGCGACTCTTGCCC
CGGTCGCGACTTTGGCACCAGGTGAAACCCTTACTCCTTTCTTCCCCTCT
GTGAGCCCCACCACATTCACTTCTACGCCGTCGATGATGTTTTCGGTGGC
ACCTAGTACAGCACCAACGGGAGCCCCGACTGGAGCGCCAAGCGGGATGT
GGACCGGAATGCCAACTGCGACGCCAACGGGCGCGCCAAGTGAACAACAC
ACAGAAGCGCCGACGGTGTCTCCCACAGTAGCTCCGACCGCAACCTTGAT
GGTCGAAACAGAGTCCGAACAATCAGTGGTCGGAAGCATCGTGATCACCT
CGGACGAGCCGCCTGTCTGCGTGGCGACCAATACTTGCGAAGGCGTGGCG
CAGGCCTCCCTGGAAGATTCACTGGGTCGCAACGGTACTCTAAACGTGAC
GAGCGTTACGGTGACGACAAGCCCCGTCGGCGACGGCCGCAGATTGCTAT
TCGTCACGGGGGCGGCGTCGTTACCATTACCCACCGTAGTTCGAAGTGGT
GGTTTTCTTCGGGCGTCGACCTCAAGGCACCTCCAGAGCAGCGGTGCGAA
CGAGACAGAGACTGACATCGATTTTATCTCTGCGCCTGTAGATTCATCCG
ACTTGACTGGGGCGGCACAGGCGGCGGAACAAATAAACGCTCTGGCGGAC
GGAGGAATCGAGAACCTGCTGGAGGAGCTCGAACTGCCGCTGGATTCTGA
AGTTGATATCAGCGGGATGAAGTACGTCGAATGTGAGACAACACTCGCAC
CCGGCGCGACACTGGCACCCGGAGCGACACTGGCACCCGGAGCGACACTG
GCACCCGGAGCGACACTGGCACCCGGAGCGACTCTTGCCCCGGTCGCGAC
TTTGGCACCAGGTGAAACCCTTACTCCTTTCTTCCCCTCTGTGAGCCCCA
CCACATTCACTTCTACGCCGTCGATGATGTTTTCGGTGGCACCTAGTACA
GCACCAACGGGAGCCCCGACTGGAGCGCCAAGCGGGATGTGGACCGGAAT
GCCAACTGCGACGCCAACGGGCGCGCCAAGTGAACAACACACAGAAGCGC
CGACGGTGTCTCCCACAGTAGCTCCGACCGCAACCTTGATGGTCGAAACA
GAGTCCGAACAATCAGTGGTCGGAAGCATCGTGATCACCTCGGACGAGCC
GCCTGTCTGCGTGGCGACCAATACTTGCGAAGGCGTGGCGCAGGCCTCCC
TGGAAGATTCACTGGGTCGCAACGGTACTCTAAACGTGACGAGCGTTACG
GTGACGACAAGCCCCGTCGGCGACGGCCGCAGATTGCTATTCGTCACGGG
GGCGGCGTCGTTACCATTACCCACCGTAGTTCGAAGTGGTGGTTTTCTTC
GGGCGTCGACCTCAAGGCACCTCCAGAGCAGCGGTGCGAACGAGACAGAG
ACTGACATCGATTTTATCTCTGCGCCTGTAGATTCATCCGACTTGACTGG
GGCGGCACAGGCGGCGGAACAAATAAACGCTCTGGCGGACGGAGGAATCG
AGAACCTGCTGGAGGAGCTCGAACTGCCGCTGGATTCTGAAGTTGATATC
AGCGGGATGAAGTACGTCGAATGTGAGACA
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