mRNA_H-elongata_contig207995.5988.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207995.5988.1
Unique NamemRNA_H-elongata_contig207995.5988.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207995.5988.1 vs. uniprot
Match: A0A673IWI8_9TELE (BED-type domain-containing protein n=2 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673IWI8_9TELE)

HSP 1 Score: 62.4 bits (150), Expect = 2.150e-7
Identity = 73/279 (26.16%), Postives = 125/279 (44.80%), Query Frame = 1 
Query:   16 IPTHTNVRWNSHFDQAVVIQEYKFVISQ-LCSSLFSEGKVDF-EYTESDWTNAAAAIEVLSLFAKTTKIMQGDNYITNSMMAMMASQLHVVCVTKAASMDLP--DYIRVAADT----MFHSVKDKFFPPTECARIAAVCDPRTKRLTWCTTNEKEE-YRKLTV-AAMNHRRKEHVDEGALLFEQXXXXXXXXXXXXXXXXXXXVSAVALLAEK------TRACEYELDRYMQGETLPPKTSSQDVLGWWYEKKQIFSVLYKVACIYLAVPASSGSSERI 804
            + T    RWNS  D      E +  IS  L S     G+ D    +E D ++A   ++ L      T +M  +   T S++A + SQL  +  TK    D P    I+ A +T     ++S ++K         +A+  DPR KRL + T  +++E +R++T  AA   + +++V++   L                      +       +       TRA E E+ +Y    ++PP + S+D L WW E   IF +L ++A +Y+ +P +S S+ER+
Sbjct:  325 LKTDVITRWNSALDMVDRFLEQQPAISAALLSQQVRRGEADLCTLSELDISHAEDLVKALKPLKDATTLMSEEGSPTVSLIAPLHSQL--IQDTKMTVGDSPVTREIKQAVNTDLTKRYNSEQEK-----NTLHLASALDPRFKRLPFLTEEDRKEIFRRVTAEAAALEQNQDNVEDENNLENDTMEGDTTTTLEEDTAPPNVLGQTFTHTDAQPQSADTRA-EEEVTKYC---SVPPISLSEDPLSWWGENAAIFPLLSRLAKLYMCIPGTSVSAERV 592
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BLAST of mRNA_H-elongata_contig207995.5988.1 vs. uniprot
Match: A0A843TLR5_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843TLR5_COLES)

HSP 1 Score: 53.9 bits (128), Expect = 8.030e-5
Identity = 21/52 (40.38%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  643 ELDRYMQGETLPPKTSSQDVLGWWYEKKQIFSVLYKVACIYLAVPASSGSSE 798
            +L+RY+    +P    S D+L WW +   ++  L+K+AC YLA+PAS+ +SE
Sbjct:  170 KLERYLDESVVPLSQKSFDILKWWSDNSLVYPTLFKIACDYLAIPASTVASE 221
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207995.5988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A673IWI8_9TELE2.150e-726.16BED-type domain-containing protein n=2 Tax=Sinocyc... [more]
A0A843TLR5_COLES8.030e-540.38Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207995contigH-elongata_contig207995:103..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size804
Cds size804
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.8579292-CDS-H-elongata_contig207995:102..5881622930162.8579292-CDS-H-elongata_contig207995:102..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207995 103..588 +
1691679305.1283119-CDS-H-elongata_contig207995:102..5881691679305.1283119-CDS-H-elongata_contig207995:102..588Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207995 103..588 +
1622930162.8768148-CDS-H-elongata_contig207995:738..10561622930162.8768148-CDS-H-elongata_contig207995:738..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207995 739..1056 +
1691679305.1365736-CDS-H-elongata_contig207995:738..10561691679305.1365736-CDS-H-elongata_contig207995:738..1056Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207995 739..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207995.5988.1prot_H-elongata_contig207995.5988.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207995 103..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207995.5988.1

>prot_H-elongata_contig207995.5988.1 ID=prot_H-elongata_contig207995.5988.1|Name=mRNA_H-elongata_contig207995.5988.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=268bp
MKEKAIPTHTNVRWNSHFDQAVVIQEYKFVISQLCSSLFSEGKVDFEYTE
SDWTNAAAAIEVLSLFAKTTKIMQGDNYITNSMMAMMASQLHVVCVTKAA
SMDLPDYIRVAADTMFHSVKDKFFPPTECARIAAVCDPRTKRLTWCTTNE
KEEYRKLTVAAMNHRRKEHVDEGALLFEQLLLASALVPEENQTQPPPPVS
AVALLAEKTRACEYELDRYMQGETLPPKTSSQDVLGWWYEKKQIFSVLYK
VACIYLAVPASSGSSERI
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mRNA from alignment at H-elongata_contig207995:103..1056+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207995.5988.1 ID=mRNA_H-elongata_contig207995.5988.1|Name=mRNA_H-elongata_contig207995.5988.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=954bp|location=Sequence derived from alignment at H-elongata_contig207995:103..1056+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGAAGGCCATCCCCACCCACACCAACGTTCGCTGGAACTCCCA
CTTCGACCAGGCCGTCGTCATCCAGGAGTACAAGTTTGTCATCTCCCAGC
TGTGCAGCTCTCTGTTTTCCGAGGGAAAGGTGGACTTCGAGTACACCGAG
AGCGACTGGACCAACGCTGCCGCTGCCATCGAGGTGCTCTCGCTTTTCGC
AAAGACCACTAAGATCATGCAGGGAGATAATTACATTACCAACAGCATGA
TGGCGATGATGGCGTCCCAGCTACACGTCGTGTGTGTAACCAAGGCCGCC
TCCATGGACCTCCCCGACTACATCAGGGTGGCAGCAGACACCATGTTCCA
CTCTGTTAAAGATAAGTTCTTCCCGCCGACGGAGTGTGCGAGGATCGCTG
CTGTCTGCGACCCTCGCACGAAGAGGCTTACCTGGTGCACGACCAACGAG
AAGGAGGAGTACCGAAAGCTTACCGTCGCAGCGATGGTCGCTGCTGACGG
GGCCCGTCGCAACGACCAGAGGTCGAGCGGGGGGTCGAAAGGACAAGGGA
AGACCGAAGGCGCTGGATCGGAGAACAAGGAAACCGCGGCGGGGGGCGCG
GGCGAGGCGGCACCTGCCGGTGCGCCCACTCACAAGAACCACCGCAGGAA
GGAGCATGTCGATGAAGGCGCCCTACTCTTCGAGCAGCTACTACTCGCAT
CCGCCCTCGTGCCAGAGGAGAACCAGACGCAACCCCCCCCCCCCGTCTCG
GCCGTGGCGCTCTTGGCCGAGAAGACGAGGGCGTGCGAGTACGAGTTGGA
TCGCTACATGCAGGGTGAAACCCTCCCCCCCAAGACTTCCTCCCAAGACG
TTTTGGGCTGGTGGTACGAGAAGAAGCAGATCTTCTCCGTCCTGTACAAG
GTCGCATGCATCTACCTCGCCGTCCCCGCGTCGTCTGGGAGTTCGGAGCG
GATC
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Coding sequence (CDS) from alignment at H-elongata_contig207995:103..1056+

>mRNA_H-elongata_contig207995.5988.1 ID=mRNA_H-elongata_contig207995.5988.1|Name=mRNA_H-elongata_contig207995.5988.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1608bp|location=Sequence derived from alignment at H-elongata_contig207995:103..1056+ (Himanthalia elongata Himel1 dioecious)
ATGAAGGAGAAGGCCATCCCCACCCACACCAACGTTCGCTGGAACTCCCA
CTTCGACCAGGCCGTCGTCATCCAGGAGTACAAGTTTGTCATCTCCCAGC
TGTGCAGCTCTCTGTTTTCCGAGGGAAAGGTGGACTTCGAGTACACCGAG
AGCGACTGGACCAACGCTGCCGCTGCCATCGAGGTGCTCTCGCTTTTCGC
AAAGACCACTAAGATCATGCAGGGAGATAATTACATTACCAACAGCATGA
TGGCGATGATGGCGTCCCAGCTACACGTCGTGTGTGTAACCAAGGCCGCC
TCCATGGACCTCCCCGACTACATCAGGGTGGCAGCAGACACCATGTTCCA
CTCTGTTAAAGATAAGTTCTTCCCGCCGACGGAGTGTGCGAGGATCGCTG
CTGTCTGCGACCCTCGCACGAAGAGGCTTACCTGGTGCACGACCAACGAG
AAGGAGGAGTACCGAAAGCTTACCGTCGCAGCGATGATGAAGGAGAAGGC
CATCCCCACCCACACCAACGTTCGCTGGAACTCCCACTTCGACCAGGCCG
TCGTCATCCAGGAGTACAAGTTTGTCATCTCCCAGCTGTGCAGCTCTCTG
TTTTCCGAGGGAAAGGTGGACTTCGAGTACACCGAGAGCGACTGGACCAA
CGCTGCCGCTGCCATCGAGGTGCTCTCGCTTTTCGCAAAGACCACTAAGA
TCATGCAGGGAGATAATTACATTACCAACAGCATGATGGCGATGATGGCG
TCCCAGCTACACGTCGTGTGTGTAACCAAGGCCGCCTCCATGGACCTCCC
CGACTACATCAGGGTGGCAGCAGACACCATGTTCCACTCTGTTAAAGATA
AGTTCTTCCCGCCGACGGAGTGTGCGAGGATCGCTGCTGTCTGCGACCCT
CGCACGAAGAGGCTTACCTGGTGCACGACCAACGAGAAGGAGGAGTACCG
AAAGCTTACCGTCGCAGCGATGAACCACCGCAGGAAGGAGCATGTCGATG
AAGGCGCCCTACTCTTCGAGCAGCTACTACTCGCATCCGCCCTCGTGCCA
GAGGAGAACCAGACGCAACCCCCCCCCCCCGTCTCGGCCGTGGCGCTCTT
GGCCGAGAAGACGAGGGCGTGCGAGTACGAGTTGGATCGCTACATGCAGG
GTGAAACCCTCCCCCCCAAGACTTCCTCCCAAGACGTTTTGGGCTGGTGG
TACGAGAAGAAGCAGATCTTCTCCGTCCTGTACAAGGTCGCATGCATCTA
CCTCGCCGTCCCCGCGTCGTCTGGGAGTTCGGAGCGGATCAACCACCGCA
GGAAGGAGCATGTCGATGAAGGCGCCCTACTCTTCGAGCAGCTACTACTC
GCATCCGCCCTCGTGCCAGAGGAGAACCAGACGCAACCCCCCCCCCCCGT
CTCGGCCGTGGCGCTCTTGGCCGAGAAGACGAGGGCGTGCGAGTACGAGT
TGGATCGCTACATGCAGGGTGAAACCCTCCCCCCCAAGACTTCCTCCCAA
GACGTTTTGGGCTGGTGGTACGAGAAGAAGCAGATCTTCTCCGTCCTGTA
CAAGGTCGCATGCATCTACCTCGCCGTCCCCGCGTCGTCTGGGAGTTCGG
AGCGGATC
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