mRNA_H-elongata_contig20793.5987.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20793.5987.1
Unique NamemRNA_H-elongata_contig20793.5987.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: D8LUC0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LUC0_ECTSI)

HSP 1 Score: 446 bits (1146), Expect = 2.030e-147
Identity = 243/390 (62.31%), Postives = 291/390 (74.62%), Query Frame = 2
Query:  242 SGDPPLDDEFQIEPNY-PEAPTAAKEPAGEWSDGKSSLAGLASLQWAKQGLQLGAVEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNP-VADKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPTL-PSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEKLQREREEYENLTPEQKRRRDLRDEKRAKKASVNKKLKMKLGKS 1402
            SGD  LDDEF+  P + PE   A       WSDGK SLAGL S+QWAKQ L L AVEYL    ++ ++AVY+ GRRRNY IAH FI  VHGLFC+RFLEAGPA E P  DRRQLLARDSCS+FLYYATGSR CLGV VTI L  RHDLFM+LW FF+P + D+V VEV+  D+D+EP++FAV +KR+VKK  QE+PHLQDY G+  AP+L P  L CLSE+SAL+EPMLP           +LLELM+ TDQN QPILGQ  TP+K LR+ F L +G   G +     G  +M+E AL Y+ LL+KF+M+ GTKKKALERR AV KRK+ +THAQRQERFQ LKNE+LQREREEYE LTPEQKRRRDLRDEK+AKK + +K+ KM++ K+
Sbjct:    8 SGDMSLDDEFRTNPFFSPETAGAGHPSTAVWSDGKVSLAGLFSMQWAKQELHLTAVEYLGFALLLGYVAVYIAGRRRNYHIAHGFIMGVHGLFCSRFLEAGPASEMPPVDRRQLLARDSCSTFLYYATGSRRCLGVQVTIDLASRHDLFMVLWSFFSPAMGDRVTVEVAFDDEDIEPVIFAVARKREVKKLLQEVPHLQDYAGVTRAPSLLPPSLVCLSESSALLEPMLPXXXXXXXXXXXNLLELMYVTDQNDQPILGQEHTPKKVLRYTFRLPVGSARGGDGSD--GATEMMELALSYIQLLNKFKMSAGTKKKALERRAAVLKRKSAITHAQRQERFQMLKNERLQREREEYEGLTPEQKRRRDLRDEKKAKKVASSKRHKMRVTKA 395          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A0A7S2UXR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXR9_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.030e-45
Identity = 107/294 (36.39%), Postives = 167/294 (56.80%), Query Frame = 2
Query:  539 GPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFF---NPVADKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKK------KALERREAVAKRKAKLTHAQRQERFQQLKNEKLQREREEYENLTPEQKRRRDLRDEKRAKKASVNKKLKMKL 1393
            G    +P      +L ++S S F +YATG  +C G LV + L +RHDLF   W      +P  D + +EV + +DD+EP VFAV Q++ +K    ++  L+ + G+I++  +PSG A L+++  +V+ +L    +K L ++  L   MHFTDQN  P++GQ+  PR  LRF+F L        ++  M    +++E +L ++D      +A G K       KA ERR   A+R+ +  H QRQE  Q+ K EKL+RER  YE +T EQK + D R+EK+  + S  +K+KMK+
Sbjct:    1 GGGSPKPPLSPGDMLFKESQSDFFFYATGRNNCHGCLVRLELSRRHDLFATFWGLLKSDHPAKDTLTIEVVMNEDDMEPFVFAVCQRKLLKSMHSDVWDLKTFTGIINSSEVPSGFAVLADSQEVVDKILHGPVVKALGKFEHLFISMHFTDQNTDPVIGQSVVPRNVLRFKFLLP-------QVAEMAELRRLMEMSLHFID-----HVASGVKLSQQACWKATERRNEAAERQFRRQHEQRQEEMQRKKAEKLRRERSAYEMMTSEQKAKWDAREEKKLARNSQGRKMKMKM 282          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A0A6A7G650_9CRUS (Uncharacterized protein (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G650_9CRUS)

HSP 1 Score: 134 bits (337), Expect = 7.660e-30
Identity = 84/284 (29.58%), Postives = 151/284 (53.17%), Query Frame = 2
Query:  407 EYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVA--DKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERF 1252
            E+ ALG IV++   +L GRR+N QIAHA+  ++   F ++F  A  A +R     +++L ++S S F +YA+G R C G+L T+ L KRHDLF LL    +  A  D V +E+S+ +D + P VF +T+K+D  K   ++P ++ +  ++ +  +P  L+ +++   L   ++    ++ + E  DL  +MHFTDQ+     G        LRF + L        +        ++ E A++Y+D +   ++ P  + +  + R  V   + +  H++RQE +
Sbjct:  148 EFAALGFIVVYACNFLYGRRKNEQIAHAWQTALSDTFSSQFA-ALCAFDRAAVANQEML-KESQSCFKFYASGRRHCYGLLATLQLKKRHDLFSLLLSLVDLSASRDTVTIEISMNEDTVPPFVFLLTRKQDESKWRNDLPDVKKFAVLVSSTRIPKHLSLVTDCPDLETELMVHKVVRAIDECKDLFLMMHFTDQSSVGYGGS-----NVLRFEYNLP-------KNDDFTQLQRLTEMAIYYIDRIASLKLTPQARLRGDKARSKVDADRMRAGHSERQENY 417          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A0A7S1GAA4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAA4_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.170e-28
Identity = 99/327 (30.28%), Postives = 152/327 (46.48%), Query Frame = 2
Query:  407 EYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSV-HGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPTLPSGLACLSENSA----------LVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEKLQREREEYENLTPEQKRRRDLRDEKRA 1354
            E   +  IV++   ++ GR  N +IA A+  +    LF  +F   G      L D    L + S + + +YA+G R C+G+L T+ L KRHDLF LL     P  D+V+V++ +   D++  VFA  + R  K    E   L +   ++   +LP  +   + +            L+  +LPP   K L E H L   MHFTDQ    + G  +  R  LRF+F L           SM      +E A+FYVDL+ + R++   ++KA E RE     + K T  +R+           +  RE Y  +TPEQ+ R D  + K+A
Sbjct:  139 EGFGVAVIVVYALNFVVGRSANQKIAAAWEDAFCESLFSKQFARIG------LGDSTSYLQKQSQNQWRFYASGRRYCVGLLATLQLRKRHDLFSLLAEIAWPDKDEVVVDIPMNPADMDTFVFAAVRSRFRKTFHSESTDLANCAKLVPHASLPDRIRSETPDDIDVLIEEHCRELMGDLLPPKVCKVLHEQHKLFHAMHFTDQAPMSVEGTGRLSRSALRFKFNLPAA-------ASMEDLRPFMEMAVFYVDLVKQLRLSKVARRKAEELREKARIERFKATREEREXXXXXXXXXXXRARREAYAKMTPEQQARADKLEAKKA 452          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: F2DK81_HORVV (Predicted protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=F2DK81_HORVV)

HSP 1 Score: 111 bits (277), Expect = 1.600e-22
Identity = 81/290 (27.93%), Postives = 145/290 (50.00%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1273
            VE + +  IVL+   +  G+R+N  IA ++I+SV  +  + F E G          +  + ++S  S+   A G ++C+G+  T+ L KRHDL  ++        D + ++V++ D  +E  VFAVT+K++ K+T +    L ++  +   P+LPS ++ L+E   L + +L P  I  L    +    MHF+DQ+       +   +K L F+F         +++  +    +M   A+  +D++      P  K K+ + R A  ++  KL +AQRQE  QQ K +K
Sbjct:   90 VEIIYVSIIVLYAVNFFNGKRKNDSIAASWIESVQPILSSNFSEYG----------KGQIVKESNYSYKVVAEGRQNCIGLQATLELRKRHDLLSVVTELLWKANDVLTIDVAMSDKAMEAFVFAVTKKKEDKRTKKASTDLNEFTSIYSVPSLPS-MSILTETFELTDEILKPEIIAALNANENEFIKMHFSDQDTL-----SPKYKKMLHFQFRA-------NDLNKLNTLTRM---AIALIDIVADVNFNPRIKAKSDKNRSAATEKAEKLKNAQRQEAAQQRKFDK 353          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A8WVF4_CAEBR (Protein CBR-CCDC-47 n=2 Tax=Caenorhabditis TaxID=6237 RepID=A8WVF4_CAEBR)

HSP 1 Score: 100 bits (250), Expect = 8.850e-19
Identity = 92/341 (26.98%), Postives = 164/341 (48.09%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSL-GDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVG----MIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQ--NQQPILGQAQT--PRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEKLQREREE--YENLTPEQKRRRDLRDEKRAKKASVNKKLKMKL 1393
            VE + +  I ++L  Y+ G+  N  IAH   +        +F   G      L      L RD+ SSF  + +G  +   + + +   KR DL   +   ++P +DK+ ++VSL G +D++PL+FAV +K+   K F+E+  L  YV     +     LP+     ++ + +V  +L P  +  L ++ + +E +H +DQ    +P  G++ T  P         L +   G  E       A+++    + +D + K +++   K+KA  +R+   +   K THA RQE  Q  K EK  RER++   +   PE++RR + ++ K+  KA   K  +MK+
Sbjct:  119 VEGIVVLIIFIYLINYIIGKTTNSSIAHTVFEMCRPTLEEQFAVVGDDGVTDLDKLEPTLKRDTDSSFSAWCSGRVNVHSLFLQMKTIKRQDLVSRVLDIYDPSSDKMTIKVSLEGGNDVDPLIFAVGEKKIATKNFREMFDLNSYVSEKKQVAQQLNLPATWQLYADQNEVVYSILEPGVVSLLRKHEEAIEFIHISDQYTGPKPAEGESYTRLPEPQRYMFMSLNLAKLGQDE----ESAAEILNLVFYLIDRVKKMKLSKDAKQKAERKRKEFEEAFLKQTHAFRQEAAQARKEEKT-RERKQKLMDEHDPERQRRLEAKELKKEAKAKQPKMKQMKV 454          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: E3M8G4_CAERE (CRE-CCDC-47 protein n=3 Tax=Caenorhabditis TaxID=6237 RepID=E3M8G4_CAERE)

HSP 1 Score: 96.3 bits (238), Expect = 2.730e-17
Identity = 79/302 (26.16%), Postives = 143/302 (47.35%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSL-GDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVG----MIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQ--NQQPILGQAQT----PRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFY-VDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1273
            VE L +  I+++L  Y+ G+  N  IAH   +        +F   G      L      L RD+ S+F  + +G  +   + + + + KR DL   +   F+P  DK+ +++ L G +D++PL+FAV +K+   K F+E+  L  YV           LP+     ++ + ++  +L P  +  L ++ + +E +H +DQ    +P  G++ T    P++ +     LK        +G    +A  I   +FY +D + K +++   K+KA +RR+   +   K TH  RQE  Q  + EK
Sbjct:  114 VEGLVVLVILIYLVNYIIGKTTNSSIAHVVFEMCRPTLEEQFSVVGDDGITELDKHETQLRRDTDSTFSAWCSGRINVNSMFLQMKMLKRQDLVSRVMDIFDPSYDKMTIKIQLEGGNDVDPLIFAVGEKKIASKNFKEMFDLNSYVSERKQAAQQLNLPATWQLYADQNEVLFSILEPGVVSLLKKHEEAIEFIHISDQYTGPKPAEGESYTRLPDPQRFMFVSLNLK-------SLGQDEESATEILNLVFYLIDKVKKMKLSKDAKQKAEKRRKDFEEAFLKQTHQFRQEAAQARREEK 408          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A0A1I7TFS3_9PELO (Uncharacterized protein n=2 Tax=Caenorhabditis tropicalis TaxID=1561998 RepID=A0A1I7TFS3_9PELO)

HSP 1 Score: 93.2 bits (230), Expect = 1.810e-16
Identity = 78/302 (25.83%), Postives = 141/302 (46.69%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSLGD-DDLEPLVFAVTQKRDVKKTFQEIPHLQDYVG----MIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQ--NQQPILGQAQT----PRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYV-DLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1273
            VE + +  I+++L  Y+ G+  N  IA+   +    +   +F   G      L      L RD+ S+F  + TG  +   + + +   KR DL   + + F+P  DK+ ++VSL   +D++PL+FA+ +K+   K F+E+  L  +V           LP+     ++ + +V  +L P  +  L  +   +E +H +DQ    +P+ G++ T    P++ +     LK       ++G    +   I   +FY+ D + K +++   K+KA  RR+       K TH  RQE  Q  K EK
Sbjct:   67 VEGIVVLIILIYLFNYIVGKTTNATIANTVFEMCRPVLEEQFAVVGDDGTTELEKLEPSLRRDTDSTFSAWCTGRVNVNSLFIQMKTIKRQDLVSRVLNIFDPTFDKMTIKVSLETGNDVDPLIFAIGEKKVASKNFKEMLDLNSFVSERKQAAQQFNLPANWQLYADQNEVVYSILDPGVVSLLKRHEQAIEFIHISDQFTGPKPVDGESYTRLPEPQRFMFVTLNLK-------QLGEDEESVTEIFNLVFYLMDKVKKMKLSKDAKQKAERRRKEFEDAFLKQTHQFRQEAAQARKEEK 361          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: A0A0D2W046_GOSRA (Uncharacterized protein n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2W046_GOSRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.220e-16
Identity = 65/270 (24.07%), Postives = 127/270 (47.04%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLA-------DRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSLGDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVGMIHAPT----LPSGLACLSENSALVEPMLPPLAI------KTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMA 1162
            VE +    ++ F+  Y  G+R N  IA A+         A+F   G   E+  +       +   LL ++  + F +YA+G R C G+L T+ L  RHDL   L++   P  D++  EVS+ ++ ++ +VFA+ +K+  K   +E+  LQ + G++  P+    +   L+ +SE+  +   ++    +      K+  +Y      MHF+DQ+           +K L F+F L        +   M    +++    +Y+DL+ +++++
Sbjct:  147 VEIICGVFLIAFMINYFIGKRENENIALAW--------AAKFATKGSIFEKNFSLLGIGEGEDSPLLLKEGQNVFKFYASGRRYCQGLLATMELKSRHDLISRLFNLVVPCKDEITFEVSMNEEAMDQVVFALAKKKAAKGMQKEVRDLQRFAGLVANPSGRKWVVDELSVISESKEVAGDLITETVLEQVFGDKSFEKYGKDFIWMHFSDQH-------PDKHKKMLLFKFSLP-------DANHMADMTRLVALVPYYIDLIGRYKLS 394          
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Match: G0MBY8_CAEBE (CBN-CCDC-47 protein n=1 Tax=Caenorhabditis brenneri TaxID=135651 RepID=G0MBY8_CAEBE)

HSP 1 Score: 92.4 bits (228), Expect = 5.050e-16
Identity = 77/299 (25.75%), Postives = 129/299 (43.14%), Query Frame = 2
Query:  404 VEYLALGTIVLFLAVYLRGRRRNYQIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATGSRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSL-GDDDLEPLVFAVTQKRDVKKTFQEIPHLQDYVG----MIHAPTLPSGLACLSENSALVEPMLPPLAIKTLVEYHDLLELMHFTDQNQQPILGQAQT----PRKTLRFRFGLKMGGWGGSEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKLTHAQRQERFQQLKNEK 1273
            VE + +  I ++L  Y+ G+  N  IAH            +F   G      L      L R++ S F  + TG  +   + + + + KR DL   +   F+P  DK+ ++VSL G  D++P++FAV +K+   K F+E+  L  +V           LP+     ++ S +V  ML P  +  L  + + +E +H +DQ   P  G+ +T    P         L +      E        +++    + +D + K +++   K KA  RR+       K TH  RQE  Q  K EK
Sbjct:  119 VEGIVVLVIFIYLLNYIIGKTTNSTIAHTIFDMCRPSLEEQFALVGDDGSSELDKLEPTLRRETDSVFSAWCTGRVNANSLFIQMKMIKRQDLVSRILDIFDPSYDKMTIKVSLEGGQDVDPMIFAVGEKKIASKNFKEMLDLNSFVSERKQAAQQFNLPATWQLYADQSEVVFSMLEPGVVSLLKRHEEAIEFIHISDQYTGPKPGEGETYTRLPEAQRIMFVSLNLKKLAEDE----ESVTEILSLVYYLIDKVKKTKLSKDAKVKAERRRKEFEDAFLKQTHQIRQEAAQARKEEK 413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20793.5987.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LUC0_ECTSI2.030e-14762.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UXR9_9STRA6.030e-4536.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6A7G650_9CRUS7.660e-3029.58Uncharacterized protein (Fragment) n=1 Tax=Hironde... [more]
A0A7S1GAA4_9STRA2.170e-2830.28Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
F2DK81_HORVV1.600e-2227.93Predicted protein n=1 Tax=Hordeum vulgare subsp. v... [more]
A8WVF4_CAEBR8.850e-1926.98Protein CBR-CCDC-47 n=2 Tax=Caenorhabditis TaxID=6... [more]
E3M8G4_CAERE2.730e-1726.16CRE-CCDC-47 protein n=3 Tax=Caenorhabditis TaxID=6... [more]
A0A1I7TFS3_9PELO1.810e-1625.83Uncharacterized protein n=2 Tax=Caenorhabditis tro... [more]
A0A0D2W046_GOSRA3.220e-1624.07Uncharacterized protein n=1 Tax=Gossypium raimondi... [more]
G0MBY8_CAEBE5.050e-1625.75CBN-CCDC-47 protein n=1 Tax=Caenorhabditis brenner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20793contigH-elongata_contig20793:2504..6110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.2
Seed ortholog evalue8.2e-123
Seed eggNOG ortholog2880.D8LUC0
Preferred nameCCDC47
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
GOsGO:0003674,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005791,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006983,GO:0006984,GO:0006996,GO:0007029,GO:0007154,GO:0007165,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009607,GO:0009791,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0012505,GO:0016043,GO:0019538,GO:0019941,GO:0023052,GO:0030163,GO:0030433,GO:0032501,GO:0032502,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0042592,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051603,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0065007,GO:0065008,GO:0071216,GO:0071704,GO:0071840,GO:0072507,GO:0098771,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.calcium ion binding
EggNOG OGsKOG2357@1,KOG2357@2759
EC1.14.13.81
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionProtein of unknown function DUF1682
Ec32 orthologEc-14_004420.1
Exons4
Model size2287
Cds size1230
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20793.5987.1prot_H-elongata_contig20793.5987.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20793 3386..5935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.2351847-UTR-H-elongata_contig20793:2503..33851622930162.2351847-UTR-H-elongata_contig20793:2503..3385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20793 2504..3385 -
1691679305.065953-UTR-H-elongata_contig20793:2503..33851691679305.065953-UTR-H-elongata_contig20793:2503..3385Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20793 2504..3385 -
1622930162.317886-UTR-H-elongata_contig20793:5935..61101622930162.317886-UTR-H-elongata_contig20793:5935..6110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20793 5936..6110 -
1691679305.116751-UTR-H-elongata_contig20793:5935..61101691679305.116751-UTR-H-elongata_contig20793:5935..6110Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20793 5936..6110 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.2506058-CDS-H-elongata_contig20793:3385..34061622930162.2506058-CDS-H-elongata_contig20793:3385..3406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 3386..3406 -
1691679305.0789587-CDS-H-elongata_contig20793:3385..34061691679305.0789587-CDS-H-elongata_contig20793:3385..3406Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 3386..3406 -
1622930162.2666707-CDS-H-elongata_contig20793:3671..39061622930162.2666707-CDS-H-elongata_contig20793:3671..3906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 3672..3906 -
1691679305.088116-CDS-H-elongata_contig20793:3671..39061691679305.088116-CDS-H-elongata_contig20793:3671..3906Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 3672..3906 -
1622930162.2838352-CDS-H-elongata_contig20793:4205..48231622930162.2838352-CDS-H-elongata_contig20793:4205..4823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 4206..4823 -
1691679305.0969822-CDS-H-elongata_contig20793:4205..48231691679305.0969822-CDS-H-elongata_contig20793:4205..4823Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 4206..4823 -
1622930162.299686-CDS-H-elongata_contig20793:5579..59351622930162.299686-CDS-H-elongata_contig20793:5579..5935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 5580..5935 -
1691679305.1069036-CDS-H-elongata_contig20793:5579..59351691679305.1069036-CDS-H-elongata_contig20793:5579..5935Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20793 5580..5935 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20793.5987.1

>prot_H-elongata_contig20793.5987.1 ID=prot_H-elongata_contig20793.5987.1|Name=mRNA_H-elongata_contig20793.5987.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=410bp
MKRGTCALLSLLGAVMIATAAPSGDPPLDDEFQIEPNYPEAPTAAKEPAG
EWSDGKSSLAGLASLQWAKQGLQLGAVEYLALGTIVLFLAVYLRGRRRNY
QIAHAFIKSVHGLFCARFLEAGPALERPLADRRQLLARDSCSSFLYYATG
SRSCLGVLVTISLYKRHDLFMLLWHFFNPVADKVIVEVSLGDDDLEPLVF
AVTQKRDVKKTFQEIPHLQDYVGMIHAPTLPSGLACLSENSALVEPMLPP
LAIKTLVEYHDLLELMHFTDQNQQPILGQAQTPRKTLRFRFGLKMGGWGG
SEMGSMRGTAKMIEFALFYVDLLHKFRMAPGTKKKALERREAVAKRKAKL
THAQRQERFQQLKNEKLQREREEYENLTPEQKRRRDLRDEKRAKKASVNK
KLKMKLGKS*
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mRNA from alignment at H-elongata_contig20793:2504..6110-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20793.5987.1 ID=mRNA_H-elongata_contig20793.5987.1|Name=mRNA_H-elongata_contig20793.5987.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3607bp|location=Sequence derived from alignment at H-elongata_contig20793:2504..6110- (Himanthalia elongata Himel1 dioecious)
TCATAGCCAACACTTGACACTGTGGAGCGCAGCTGAGGTAAGTATCCGTG CGTTTCACAAGCGAACATGCTCCACATTGGAAAATTCTTATAGCGCTTAG AGTCAAAACAACCCAGGTATTCGTGTGGAAGATACCACCTCGTCCCTCTC GCCACCAAAAGAGAGGAATGCAACCATGAAACGAGGTACTTGTGCGTTGC TGTCCCTCCTTGGGGCGGTGATGATCGCTACCGCAGCCCCATCGGGGGAT CCGCCGCTGGACGACGAGTTCCAGATTGAACCAAACTACCCAGAAGCACC AACAGCAGCGAAGGAACCCGCAGGAGAGTGGTCTGACGGGAAATCCTCTC TGGCCGGTCTTGCCTCCCTGCAGTGGGCAAAACAAGGACTGCAGTTGGGC GCCGTCGAGTACCTTGCTCTGGGGACCATCGTGCTCTTCCTTGCTGTCTA CTTGCGCGGCCGGCGGCGAAACTACCAAATTGCGCACGCCTTCATCAAGA GCGTTCACGGTCTCTTTTGCGCTCGATTCTTGTGAGTGAACAGAGGACGA TCGTTGAGTGCTGCCACATGTATACCGCTGCACCGCTATGCTGTGACTCT ACGAAACGCCACCCTTCCTTCTAATATTAACTTACGTACGAACTGATCGC CCGAACACCATAACTGCTAAACAACGTCAATCAGCTTTGTGCGGAAGCTG TGAGTTCGACTCATCTATAGGATCTAATATATATATACCGATATATATTT TCTGGTTTCTGTAGCGGGAAGCGCTAGAGCGAGAGTAAGCTAACTATTAA TACAACATATGCTTTACCCAGAGGGCTGACGAGGGTGTTAGAGGGCTGAA CTTGTCCTAGGCGTGAACAAGCGAGAGAGGGGTTGATCATTTAGAAGACC ACAGGTGGTGCGAGGAAGCGTTGCGGTAGGTTGGAAAGTGCCAACAAACA AACAAACAAACAAAACTACTACTCTGCTGCTGCCTGTAGAGTGTTCTTGT TACCTTGTTAACATGTTTTCTTGAGAGAGCGATGCAATTATAGCACGAGT ACCCACATTTGGACGAACGCGACAGCCCCAAACTGTGCGCGTCAAGGGTC TCGTCCAACGCCCTTCGGCAGAAAGGGTACGCCGATGCGCATTTTGCACC CACATATTGTACCGTACTCGGCCGACCGGGTGAAAAAAAGTTCAAACCGA CAGAGTCTCGTTACGGTTTTGAGCTCGTTTTTTTTTTAGGATTCTTATTA CATCGTCGCTCAACGCCCACCCCTGACTTTTTCTCAGGGAAGCAGGTCCG GCGCTGGAGAGACCACTCGCGGACAGGCGGCAACTCTTAGCCCGAGATTC TTGCAGTAGCTTCCTCTACTACGCCACAGGGAGTCGGAGTTGCTTAGGCG TGCTCGTGACGATCAGCCTGTACAAAAGGCACGACCTGTTTATGCTCTTG TGGCACTTCTTCAACCCCGTCGCAGACAAGGTGATCGTCGAGGTCAGCCT CGGTGACGATGATCTTGAGCCCCTCGTGTTCGCGGTTACACAAAAGCGAG ACGTGAAGAAGACCTTCCAGGAAATCCCGCATCTGCAGGACTACGTTGGT ATGATCCACGCGCCTACCTTGCCCTCGGGGCTCGCTTGCCTGTCCGAAAA CAGCGCCCTGGTGGAGCCTATGTTGCCTCCCCTGGCTATCAAGACGTTGG TCGAGTACCACGACCTACTCGAGCTCATGCACTTCACCGACCAAAACCAG CAGCCCATCCTGGGGCAAGCGCAGACGCCTAGGAAGACGCTGAGATTCCG GTTTGGACTAAAGATGGGGGGTTGGGGTGGCAGCGAGATGGGATCGATGA GGGGGACGGCCAAGATGATCGAGTTTGCTTTGTTCTACGTCGACCTCTTG CACAAGTGAGAGATGCACCATTAAGCCCCGATGCAGGGTATGTCCATAGT GACGTTTTGCTGTTTTGAGCGATTTAATCCACTGGCCATATATGAACCTC GACCGAAGAGCGTCTGTACACATGGAAATGGCGGTTGTACTACCATGCTT TGCTCGCATCCCTCTAGACTGAAATGCTTTTCCGCCATTCAGGATTTCGG TTGCGCGTGAGCGCGGCTCACTGCAACCGCAAGTGTTGTCGATGTTCCTT CTTGGGCGTTGTTGGTAGCGTGTTGATGTCAGCGTCTCGCTCTCCGGGAA CCAGGTTTCGCATGGCACCGGGGACGAAGAAAAAGGCACTCGAACGGCGA GAAGCTGTGGCAAAGCGCAAGGCGAAGCTGACCCACGCGCAGCGACAGGA GCGTTTCCAACAGCTCAAGAACGAGAAACTGCAAAGGGAGCGGGAGGAGT ACGAGAACCTGACACCGGAGCAGAAGCGTCGACGTGACTTAAGAGACGAG AAGAGAGCAAAAAAGGCATCGGTCAACAAAAAACTCAAGGTATTTTGTAA CTGCGCGATAGCCTTGGTTACCAAAGCCTCCTGTTCGGTGACCATTGCCT GCCTTGGTTTCCTGAAACATGGATGTAATCAGACGCCTCCAAGCGGGCAT CCATCGAAGGCAGCTGATTAATGCACTTGGGAGTACCCGACCGGTTTCTC CTCGGGTCGTTGTGAAATGCCGGTGAACATTTTCCCCTCGGCGGCTGAGT GCTGTGACGCGTTTATACCCCCCCGTGTCTGCTGCACGTTCCGTAACTGC ACAGATGAAGTTGGGTAAATCGTGAAAACGGAGGCAGGACCGGACAAATA ATCGCCATCCGAAGGACGATGAAGAGCGTCCCAAGGCCAAATGGTGGCCC CGCGTCGTTTCTTTTTTTGTGACGTGTTTTCCCCTCTCCTTAACCTTGGT GTGTCAAAAAAGAACATACCTCTCTATCTCTATTAATTCTGCGTCTGTGT GGGTCCTCAGCGACTGCGTCTTCATTCCTAGCTATTGCGGCCTTCGGTTA CGTCTGCTGCATACCCAGATCGCTACGGTTCGGAAAAATAGTTTCCTGTA GTCGGTTATCCGTGCGGCTTTGAGAAATGACCTATATATTAATCCGAGCG ATATATATATATATATTTTTTTCGATCGTCGGACAAACACTTCTTCGCCA ATGCAAGTGTTAAAATAAAAAAATGAAAACTCTCTCTCGAAGATAATGCA AGTTGGACTGGGCTGGTCAGATAATGCGTACGCGCGTAGGCTTACGTTTG CTGCGGAAACTTTAACTTGTCTAGATTGCGTCCCTCCCTTTTTTTTAAAC AGTGACTAATATGGTCAAATAATATGTTGACTACGCTCTCTCGATCCTTG CGCGAGGCTATCGATTGAAAGCCTCGTAGGCGTCACTTAGTTACGAGTCT GCAGCGTGTGCCAGAAATATTGAAACTTCTCCGGCGGGACTCCCTATGGA GGATGACCAAAACTGGAACAAGGCTTATACCGTGCATCGCGCCGGACGAA GTGACTGCGTAGAGCATGAGGACGCCCTGCCGTTCCGGTACCTGTGAGGT CTGTGAAAGCTCCAAGACTGTCTCGCTGGACGCCTTAATTCAAGAATTAC CCACCTCTCAGACATCATCAATGGCGCAAAACATGAAGCCACCGCGCCCT TTCCCCG
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Coding sequence (CDS) from alignment at H-elongata_contig20793:2504..6110-

>mRNA_H-elongata_contig20793.5987.1 ID=mRNA_H-elongata_contig20793.5987.1|Name=mRNA_H-elongata_contig20793.5987.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2460bp|location=Sequence derived from alignment at H-elongata_contig20793:2504..6110- (Himanthalia elongata Himel1 dioecious)
ATGAAACGAGGTACTTGTGCGTTGCTGTCCCTCCTTGGGGCGGTGATGAT
CGCTACCGCAGCCCCATCGGGGGATCCGCCGCTGGACGACGAGTTCCAGA
TTGAACCAAACTACCCAGAAGCACCAACAGCAGCGAAGGAACCCGCAGGA
GAGTGGTCTGACGGGAAATCCTCTCTGGCCGGTCTTGCCTCCCTGCAGTG
GGCAAAACAAGGACTGCAGTTGGGCGCCGTCGAGTACCTTGCTCTGGGGA
CCATCGTGCTCTTCCTTGCTGTCTACTTGCGCGGCCGGCGGCGAAACTAC
CAAATTGCGCACGCCTTCATCAAGAGCGTTCACGGTCTCTTTTGCGCTCG
ATTCTTATGAAACGAGGTACTTGTGCGTTGCTGTCCCTCCTTGGGGCGGT
GATGATCGCTACCGCAGCCCCATCGGGGGATCCGCCGCTGGACGACGAGT
TCCAGATTGAACCAAACTACCCAGAAGCACCAACAGCAGCGAAGGAACCC
GCAGGAGAGTGGTCTGACGGGAAATCCTCTCTGGCCGGTCTTGCCTCCCT
GCAGTGGGCAAAACAAGGACTGCAGTTGGGCGCCGTCGAGTACCTTGCTC
TGGGGACCATCGTGCTCTTCCTTGCTGTCTACTTGCGCGGCCGGCGGCGA
AACTACCAAATTGCGCACGCCTTCATCAAGAGCGTTCACGGTCTCTTTTG
CGCTCGATTCTTGGAAGCAGGTCCGGCGCTGGAGAGACCACTCGCGGACA
GGCGGCAACTCTTAGCCCGAGATTCTTGCAGTAGCTTCCTCTACTACGCC
ACAGGGAGTCGGAGTTGCTTAGGCGTGCTCGTGACGATCAGCCTGTACAA
AAGGCACGACCTGTTTATGCTCTTGTGGCACTTCTTCAACCCCGTCGCAG
ACAAGGTGATCGTCGAGGTCAGCCTCGGTGACGATGATCTTGAGCCCCTC
GTGTTCGCGGTTACACAAAAGCGAGACGTGAAGAAGACCTTCCAGGAAAT
CCCGCATCTGCAGGACTACGTTGGTATGATCCACGCGCCTACCTTGCCCT
CGGGGCTCGCTTGCCTGTCCGAAAACAGCGCCCTGGTGGAGCCTATGTTG
CCTCCCCTGGCTATCAAGACGTTGGTCGAGTACCACGACCTACTCGAGCT
CATGCACTTCACCGACCAAAACCAGCAGCCCATCCTGGGGCAAGCGCAGA
CGCCTAGGAAGACGCTGAGATTCCGGTTTGGACTAAAGATGGGGGGTTGG
GGTGGCAGCGAGATGGGATCGATGAGGGGGACGGCCAAGATGATCGAGTT
TGCTTTGTTCTACGTCGACCTCTTGCACAAGGAAGCAGGTCCGGCGCTGG
AGAGACCACTCGCGGACAGGCGGCAACTCTTAGCCCGAGATTCTTGCAGT
AGCTTCCTCTACTACGCCACAGGGAGTCGGAGTTGCTTAGGCGTGCTCGT
GACGATCAGCCTGTACAAAAGGCACGACCTGTTTATGCTCTTGTGGCACT
TCTTCAACCCCGTCGCAGACAAGGTGATCGTCGAGGTCAGCCTCGGTGAC
GATGATCTTGAGCCCCTCGTGTTCGCGGTTACACAAAAGCGAGACGTGAA
GAAGACCTTCCAGGAAATCCCGCATCTGCAGGACTACGTTGGTATGATCC
ACGCGCCTACCTTGCCCTCGGGGCTCGCTTGCCTGTCCGAAAACAGCGCC
CTGGTGGAGCCTATGTTGCCTCCCCTGGCTATCAAGACGTTGGTCGAGTA
CCACGACCTACTCGAGCTCATGCACTTCACCGACCAAAACCAGCAGCCCA
TCCTGGGGCAAGCGCAGACGCCTAGGAAGACGCTGAGATTCCGGTTTGGA
CTAAAGATGGGGGGTTGGGGTGGCAGCGAGATGGGATCGATGAGGGGGAC
GGCCAAGATGATCGAGTTTGCTTTGTTCTACGTCGACCTCTTGCACAAGT
TTCGCATGGCACCGGGGACGAAGAAAAAGGCACTCGAACGGCGAGAAGCT
GTGGCAAAGCGCAAGGCGAAGCTGACCCACGCGCAGCGACAGGAGCGTTT
CCAACAGCTCAAGAACGAGAAACTGCAAAGGGAGCGGGAGGAGTACGAGA
ACCTGACACCGGAGCAGAAGCGTCGACGTGACTTAAGAGACGAGAAGAGA
GCAAAAAAGGCATCGGTCAACAAAAAACTCAAGGTTTCGCATGGCACCGG
GGACGAAGAAAAAGGCACTCGAACGGCGAGAAGCTGTGGCAAAGCGCAAG
GCGAAGCTGACCCACGCGCAGCGACAGGAGCGTTTCCAACAGCTCAAGAA
CGAGAAACTGCAAAGGGAGCGGGAGGAGTACGAGAACCTGACACCGGAGC
AGAAGCGTCGACGTGACTTAAGAGACGAGAAGAGAGCAAAAAAGGCATCG
GTCAACAAAAAACTCAAGATGAAGTTGGGTAAATCGTGAATGAAGTTGGG
TAAATCGTGA
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