mRNA_H-elongata_contig20791.5986.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20791.5986.1
Unique NamemRNA_H-elongata_contig20791.5986.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: D7FX39_ECTSI (Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI)

HSP 1 Score: 461 bits (1186), Expect = 1.290e-158
Identity = 219/268 (81.72%), Postives = 242/268 (90.30%), Query Frame = 1
Query:   49 GEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            GE    A  + E+GL LFNT+GR K+RFRP+D+RRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG+EVDHVCNLTDVDDKII RMARDGV+L +LT KYA LFF+DL SLNI+PASRYPRATEHI DIVEMVQGL+DK LAY  NGSVYFRVSKHGKYG LA LD  GM+DGAGEGGG+ DA+EFESEKE+ +DFALWK YKPEDG+VFW+T LGKGRPGWHIECSAMAR+FLGDT+D+HAGGIDLVFPHHENE+AQSEGFT
Sbjct:    5 GEGGGGAGAEVESGLMLFNTEGRTKERFRPQDRRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIVPASRYPRATEHIDDIVEMVQGLIDKELAYKVNGSVYFRVSKHGKYGTLACLDTSGMEDGAGEGGGVNDAAEFESEKEDAKDFALWKGYKPEDGEVFWDTLLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFT 272          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A6H5J887_9PHAE (Cysteine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J887_9PHAE)

HSP 1 Score: 440 bits (1131), Expect = 1.760e-142
Identity = 224/315 (71.11%), Postives = 248/315 (78.73%), Query Frame = 1
Query:    1 PRSSSLLMELEAAKEPGEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKR----RVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG---------------------------YEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            PRSSSLL+   A             + E+GL LFNT+GR K+RFRP+D+R    RVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG                           +EVDHVCNLTDVDDKII RMARDGV+L +LT KYA LFF+DL SLNIIPASRYPRATEHI DIVEMVQGL+DK LAY  NGSVYFRVSKH KYG LA LD  GM+DGAGEGGG+ DA++FESEKE+ +DFALWK YKPEDG+VFW+TSLGKGRPGWHIECSAMAR+FLGDT+D+HAGGIDLVFPHHENE+AQSEGFT
Sbjct:  658 PRSSSLLVMGGAXXXXXXXX----AEVESGLMLFNTEGRTKERFRPQDRRQDFGRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGPTTTPCMTMSTPPPNIRLRSWSLVPPSFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIIPASRYPRATEHIDDIVEMVQGLIDKELAYEVNGSVYFRVSKHDKYGALACLDTSGMEDGAGEGGGVNDAADFESEKEDAKDFALWKGYKPEDGEVFWDTSLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFT 968          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A835ZDL4_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA)

HSP 1 Score: 409 bits (1051), Expect = 1.110e-138
Identity = 188/256 (73.44%), Postives = 224/256 (87.50%), Query Frame = 1
Query:   85 AGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            A L+L+NT  R K+  RP   +R+ FYSCGPTVYD AHIGNFRAFLTYDVLKRWL Y+G+EVDHVCNLTD+DDKII RMARDGV LR+LT++YA+LFFEDL +LN++PA  YPRAT+H+ +IVEMVQ L++KGLAY +NGS+YFRV++H  YG LA L   GMQDGAGEGGGI+D  E+E++KE+ +DFALWKAYKPEDG VFWET+LGKGRPGWHIECSAMAR++LGDT+D+HAGGIDLVFPHHENE+AQSEG T
Sbjct:    9 AKLQLYNTAARTKEPLRPLSGKRIAFYSCGPTVYDHAHIGNFRAFLTYDVLKRWLTYRGFEVDHVCNLTDIDDKIIRRMARDGVGLRELTDRYAALFFEDLAALNVVPARAYPRATDHVAEIVEMVQTLLEKGLAYENNGSIYFRVARHSGYGALANLKFEGMQDGAGEGGGISDLDEYETDKESAKDFALWKAYKPEDGPVFWETALGKGRPGWHIECSAMARKYLGDTIDIHAGGIDLVFPHHENEVAQSEGAT 264          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: W7U426_9STRA (Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA)

HSP 1 Score: 382 bits (980), Expect = 1.030e-126
Identity = 182/252 (72.22%), Postives = 211/252 (83.73%), Query Frame = 1
Query:   91 LRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEG 846
             +L+NT  R K+ F+     +V FYSCGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+V+HVCNLTDVDDKII RMARDG++L +LT+K+A +FFEDL +LN++PAS YPRATEHI DIV MVQ LVD+G AY S GS YFRVS+   YG LA LD  GM+ GA +GGGI+DA E+ ++K + +DFALWKAYK EDG VFWET+LGKGRPGWHIECSAMARRFLG TVDLHAGG+DLVFPHHENEIAQSEG
Sbjct:   90 FQLYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPASHYPRATEHIQDIVSMVQALVDRGYAYESQGSFYFRVSRFPSYGSLAKLDFSGMEMGAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEG 341          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S0CUB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUB0_9EUKA)

HSP 1 Score: 358 bits (918), Expect = 6.730e-122
Identity = 167/256 (65.23%), Postives = 207/256 (80.86%), Query Frame = 1
Query:   91 LRLFNTDGRAKQRFRPRDK--RRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            LRL+NT  R K +F P D   ++VKFYSCGPTVYD AHIGNFRAFLTYD++KRWLLY GY+VDHVCNLTD+DDKI+ RM RD ++L+DLTNKY+ LFF+DL SLN+IPA+RYP+AT+HI +IV M+Q L++K  AY    SVYFR S    YGCL+G++  G  +G GEGG     ++F  EK++++DF LWKAYKPEDGDV W T++G GRPGWHIECSAMA+++LGDT+DLHAGG+DLVFPHHENE AQ+E  T
Sbjct:    1 LRLYNTAQREKIKFEPLDPEGKKVKFYSCGPTVYDFAHIGNFRAFLTYDLIKRWLLYLGYDVDHVCNLTDIDDKILQRMKRDDISLKDLTNKYSDLFFQDLASLNVIPATRYPKATDHIDEIVAMIQTLIEKDKAYRVGDSVYFRTSAFESYGCLSGMNLEGNVEGQGEGG-----NKFLGEKQDSKDFVLWKAYKPEDGDVVWNTAIGNGRPGWHIECSAMAQKYLGDTLDLHAGGVDLVFPHHENEKAQTEAAT 251          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S0EPZ0_9CRYP (Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EPZ0_9CRYP)

HSP 1 Score: 363 bits (932), Expect = 4.410e-121
Identity = 176/256 (68.75%), Postives = 203/256 (79.30%), Query Frame = 1
Query:   88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
            G +++NT  R K+ F P   D R VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GYEVDH+CNLTDVDDKII RM RD V L++LT K+A  FF+DL  LNIIPA +YPRATEHI DIV+M+ GLV+KG AY  +GS YF VS    YG LA LD   M DGA EGGGITD   FE  K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct:   93 GFKIYNTLSRDKETFEPMCEDGRTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYEVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVDMINGLVEKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMLDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVAWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 346          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: L1I7X3_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7X3_GUITC)

HSP 1 Score: 362 bits (929), Expect = 4.540e-121
Identity = 175/256 (68.36%), Postives = 202/256 (78.91%), Query Frame = 1
Query:   88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
            G +++NT  R K+ F P   D + VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+VDH+CNLTDVDDKII RM RD V L++LT K+A  FF+DL  LNIIPA +YPRATEHI DIVEM+ GLV KG AY  +GS YF VS    YG LA LD   M DGA EGGGITD   FE  K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct:   21 GFKIYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVEMINGLVQKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMMDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 274          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S4UT40_GUITH (Cysteine--tRNA ligase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UT40_GUITH)

HSP 1 Score: 362 bits (929), Expect = 8.590e-119
Identity = 175/256 (68.36%), Postives = 202/256 (78.91%), Query Frame = 1
Query:   88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
            G +++NT  R K+ F P   D + VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+VDH+CNLTDVDDKII RM RD V L++LT K+A  FF+DL  LNIIPA +YPRATEHI DIVEM+ GLV KG AY  +GS YF VS    YG LA LD   M DGA EGGGITD   FE  K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct:  127 GFKIYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVEMINGLVQKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMMDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 380          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S2S4N2_9STRA (Cysteine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA)

HSP 1 Score: 357 bits (916), Expect = 1.640e-118
Identity = 171/246 (69.51%), Postives = 199/246 (80.89%), Query Frame = 1
Query:  115 RAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            R+K+ F P    +V FYSCGPTVYD AHIGNFRAFLTYDVLKRWL + G++V+HVCNLTD+DDKII R+ARDGV+L++LT+KYA+ FFEDL +LN++PA  YPRATE+IG I +MV+ L+    AY  NGS YF VSK  KYG LA LD  GMQDGA EGGG++ + +FE  K +  DFALWKAYKP+DGDV W TSLGKGRPGWHIECSAM R F GD+VDLHAGGIDLVFPHHENEIAQSE  T
Sbjct:    2 RSKEPFSPECPPKVSFYSCGPTVYDFAHIGNFRAFLTYDVLKRWLTFLGFDVEHVCNLTDIDDKIIARIARDGVSLQELTDKYAAAFFEDLDALNVMPADAYPRATEYIGPIEDMVKSLLSSSAAYEENGSYYFDVSKSAKYGRLARLDIEGMQDGASEGGGMSSSEDFE--KRSPRDFALWKAYKPQDGDVSWTTSLGKGRPGWHIECSAMIREFFGDSVDLHAGGIDLVFPHHENEIAQSEAVT 245          
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A2V3J570_9FLOR (Cysteine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J570_9FLOR)

HSP 1 Score: 306 bits (784), Expect = 5.980e-98
Identity = 150/257 (58.37%), Postives = 186/257 (72.37%), Query Frame = 1
Query:   82 EAGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
            E+ L  FN+  R K+ F+  +   V+FYSCGPTVYD AHIGNFRAFLTYDV+KRWL+++GY V HV NLTDVDDKII R+ R+  + ++LT++Y++ FF+DL  LN+IPA  YPRAT+HI  I   V GL  +G AY   GS YF VS    YG LA LDR   ++ +      +D+ E++  K++  DFALWK YKPEDGDV+W  SLGKGRPGWHIECS MA  +LG  +D+HAGGIDLVFPHHENEIAQSE  T
Sbjct:   52 ESELVFFNSLTRQKEPFKTVEPGVVRFYSCGPTVYDYAHIGNFRAFLTYDVIKRWLIFKGYTVRHVMNLTDVDDKIIARVQREKCSAKELTDRYSNAFFDDLKLLNVIPADHYPRATQHIEHIETFVNGLKKRGYAYERQGSTYFSVSSFSDYGRLAQLDRRQCENAS-----ASDSDEYD--KDDIRDFALWKTYKPEDGDVYWNNSLGKGRPGWHIECSCMAMEYLGSELDIHAGGIDLVFPHHENEIAQSEALT 301          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX39_ECTSI1.290e-15881.72Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5J887_9PHAE1.760e-14271.11Cysteine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP ... [more]
A0A835ZDL4_9STRA1.110e-13873.44Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxI... [more]
W7U426_9STRA1.030e-12672.22Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxI... [more]
A0A7S0CUB0_9EUKA6.730e-12265.23Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0EPZ0_9CRYP4.410e-12168.75Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia p... [more]
L1I7X3_GUITC4.540e-12168.36Cysteine--tRNA ligase n=1 Tax=Guillardia theta (st... [more]
A0A7S4UT40_GUITH8.590e-11968.36Cysteine--tRNA ligase n=1 Tax=Guillardia theta Tax... [more]
A0A7S2S4N2_9STRA1.640e-11869.51Cysteine--tRNA ligase n=1 Tax=Rhizochromulina mari... [more]
A0A2V3J570_9FLOR5.980e-9858.37Cysteine--tRNA ligase n=1 Tax=Gracilariopsis chord... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20791contigH-elongata_contig20791:3104..6605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.6e-98
Seed eggNOG ortholog55529.EKX32351
KEGG rclassRC00055,RC00523
KEGG koko:K01883
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.cysteinyl-tRNA aminoacylation
EggNOG OGsCOG0215@1,KOG2007@2759
EC6.1.1.16
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCysteinyl-tRNA Synthetase
Ec32 orthologEc-10_004180.1
Exons6
Model size852
Cds size831
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.1008136-UTR-H-elongata_contig20791:3103..31241622930162.1008136-UTR-H-elongata_contig20791:3103..3124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20791 3104..3124 +
1691679304.9740038-UTR-H-elongata_contig20791:3103..31241691679304.9740038-UTR-H-elongata_contig20791:3103..3124Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20791 3104..3124 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930162.115647-CDS-H-elongata_contig20791:3124..32521622930162.115647-CDS-H-elongata_contig20791:3124..3252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 3125..3252 +
1691679304.984747-CDS-H-elongata_contig20791:3124..32521691679304.984747-CDS-H-elongata_contig20791:3124..3252Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 3125..3252 +
1622930162.1282651-CDS-H-elongata_contig20791:3701..38121622930162.1282651-CDS-H-elongata_contig20791:3701..3812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 3702..3812 +
1691679304.9930773-CDS-H-elongata_contig20791:3701..38121691679304.9930773-CDS-H-elongata_contig20791:3701..3812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 3702..3812 +
1622930162.1463406-CDS-H-elongata_contig20791:4353..45581622930162.1463406-CDS-H-elongata_contig20791:4353..4558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 4354..4558 +
1691679305.0052388-CDS-H-elongata_contig20791:4353..45581691679305.0052388-CDS-H-elongata_contig20791:4353..4558Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 4354..4558 +
1622930162.1623366-CDS-H-elongata_contig20791:5147..52581622930162.1623366-CDS-H-elongata_contig20791:5147..5258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 5148..5258 +
1691679305.0234632-CDS-H-elongata_contig20791:5147..52581691679305.0234632-CDS-H-elongata_contig20791:5147..5258Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 5148..5258 +
1622930162.179328-CDS-H-elongata_contig20791:6038..61251622930162.179328-CDS-H-elongata_contig20791:6038..6125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 6039..6125 +
1691679305.042257-CDS-H-elongata_contig20791:6038..61251691679305.042257-CDS-H-elongata_contig20791:6038..6125Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 6039..6125 +
1622930162.1961117-CDS-H-elongata_contig20791:6416..66051622930162.1961117-CDS-H-elongata_contig20791:6416..6605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 6417..6605 +
1691679305.0564098-CDS-H-elongata_contig20791:6416..66051691679305.0564098-CDS-H-elongata_contig20791:6416..6605Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20791 6417..6605 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20791.5986.1prot_H-elongata_contig20791.5986.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20791 3125..6605 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20791.5986.1

>prot_H-elongata_contig20791.5986.1 ID=prot_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp
MELEAAKEPGEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKRRVKFYSC
GPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRM
ARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGL
VDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEF
ESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGD
TVDLHAGGIDLVFPHHENEIAQSEGFT
back to top

mRNA from alignment at H-elongata_contig20791:3104..6605+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20791.5986.1 ID=mRNA_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3502bp|location=Sequence derived from alignment at H-elongata_contig20791:3104..6605+ (Himanthalia elongata Himel1 dioecious)
CCGAGGTCGTCGTCGTTGTTGATGGAGCTGGAGGCAGCAAAGGAGCCCGG GGAGAAGGATAGGGACGCGGACACAGACGCAGAGGCGGGGCTGCGACTGT TCAACACGGACGGTCGTGCGAAGCAACGTTTCCGACCACGGGACAAGAGG TGACTCGCTTATCTTGAGAGAGGTGGAGCTCTGCAGCAGTAGCAATATAC GACAGGGGGGGTAAACGGAGTTCTTTCTCTTGGTGTCACGAAAACAGCTG ATGATGTTGGCACAGATGGAAACCTTCTCCTGCCGAGGGTCGTCAATCAC ACCACTCCCCAGCGAAGCAGGCAAACGCATCGCGAGAGGAAAACGCGAAG AAAATATTTTGGTCAATCCCCCGCCAGGAAAATGTCCAAGGAGGTCCACG GGATCTAACGCGCGCTTCAAGGGCCACGTCCACTATCGCCGCCTCGTGTA CTGTGCTTTCGCTTCCCTAGAGAACGATTGCCTTCACCTTCGCCTGTCGG TTTGACTCCTCCCTCCCTCCCTGGCTCCCTCCGCGTCAATCCTCCCCTTA CTCCACCGTTGGTGTTTGCGTGTTGGGGATGAACGGTACCAAAAAAAGGA GAGTTAAATTCTATAGCTGCGGTCCGACGGTGTACGACATGGCGCACATC GGAAACTTCAGGGCTTTCCTGACCTACGACGTCCTCAAGCGGTGGCTGCT CTACCAAGGGTGAGAATAATTGGTAGTGGCACCGACCTAATCTTGTCCCC CCGGCGTGTCCTTTCTGATGAAGGGAGGAGAAAATCGCTTCGGGTGGGGG GTGCTGGGCGGGGCGAATGTCGTGAATTGTTGAATGGGTCAAGGCGCGTG AAGCGGTCGCGCACGCTCACACGTCGTATCGATTGATTGGCGACTAATGG CCTGAGCAGCCTCCCGGCGACCACACCAAGCGTGCGCCGGAGTCTCCGCA GAAATCAGATTATAGTACAATATAGTGGAGTGTTGTGCAGTGCAGTACCC TTGCGCCTGTCGCATAGTATTTGAATACGTATGCAGTATACGGTACCTGG TATACGGTATACGGCACACCACCGGACAGAACCAACTCAGGAAACAATAG AGAATGAGGAGTTCGTAGCAGTGTTTGGGGTTCGGTTTCTTCGTTTCCAC AGGACGAGAGAGGAAAAAATATAGAGAGATATATACCATGGAATGCTGAC GGTCCTCCCCCTGACCTCTTGATCTCCACTGACCACCCTCCCCTCCTAAG CTACGAGGTAGACCACGTATGCAACCTGACGGACGTGGACGACAAGATCA TTGGCCGCATGGCGCGAGACGGCGTGACTCTCAGGGACCTCACCAACAAG TACGCATCGCTGTTCTTCGAGGACCTCGGGTCGCTCAACATCATCCCCGC ATCCCGTTACCCTCGGGCAACGGAGCACATCGGCGATATCGTGGAGATGG TGCAGGTCGGATCTCTGGTCATTTCCCGCGTCGTCTGCTCCGTTTTCCTT CCCACCTTGTGCCTTCGTTCTCCGAGCTCCTCTGAGCAATGGCGCGTCTT CGCTTTCTCTTCCCCTTCCTGCCCTCATCTCCCCAAAACGGCGTCGCACC CTGTTTAGGAATATGTCTTGTCGAGGTCAGGCTCTGTACAGAGTACTTGC ATTAAAATATACTCACTAGTCAAAGGGAGGCCCTGACGTGTGGGTGGCAC GCTAGCCTCCAAACCGTGTGTATTTTTGCGGGGTTTCGATTGATGTCTGC TGGTTTAGCGTGCTCCGCCGCTGGGAATTAGAGCGAGTGCGGACGCCGGG TCGACGGGTTGCTCGCGCCGCCCACTTGAGGCCGTGCGCCCGCGCGTCAT CGTTGCCGTCGCAGGTAAATTTAACGAACTGTATTGATTATATTGCATTG TTTGTAGGGGGGGGGCTAGCACGGGCCGACTCCACCTTTCCCTTGCTGCA GCGCAACGCATTTCCCAACCCTCACGGCCCCAGTGGAACGCCTTCTTGCG GATGGATGGGTATCTGGGTGTGTTGTTATCACCCTGTTGCAAAGGGCCTC GTGGACAAGGGGCTGGCGTACGCGTCGAACGGGTCGGTGTACTTCAGGGT GTCCAAGCACGGCAAGTACGGGTGTCTCGCCGGTCTCGACAGGCCTGGTA TGCAGGTGGGCGCGTGCGCGCGAGGGGAGGATTGGGTGGGAAGCTCGAGG GACTGGGTTAGGGTGGGAGATCTGAACCCGATCGAACAAAAAACGGCGCA GAGGGGAATATGGGCCGTACGTTTTGGGCGTTCAGCAGCGCGGAGTTGTG TGCTTGCTGCACCCGTCTGCTGTTCCTCGAAGCAGCATGCGTGTCTGTGC GATGCATTCGATTCATGACATTCCCGTAGGGCTGTGACTGTTCGAAATTA ACATGCGGTGGGATTCGTGAGTTTTGGTGACGGAACGCTCGCTCGGGGTC TATCTTTTATTTAAAAGCAACCCATGACTCTAATTCTACGAGAGAGTAAT GTACAGCAGTCCATGCCCGACCCTATTATCTACCTCACCACATACGAAAT ATATATCATCCAATTATTTTTAGGATGTTTCTTCAGGGGGAAGGTGGTGC ACATTTGACCAAGTTCACTTCACTGCCCACAGTCGCGCACTCGCAACTGT TTGTCCGGCGTTATCTCGTACAATAGGAAGATTGTCTACATCTTGTGCTC TCGGTCTGCTGTATTATTTATTATCTTATTTTTCTCTCTCTGTCATAGTA TATATATATATCGTCATAGTCTCTATCTCTGCCAGCCTCGATGAAGTCTA GTATGATAAATTATAATTCCCTCCACGAACCCTCCTGTACTCTTCACAGT AAACGTTAGCAAGAAATCGCTAAATCGCCTTTGACTTTTTCGGTGTCTAC CCCGCCCTCCGCTGCCGTCGCCTCTTGCGGCGCAGGATGGTGCTGGGGAA GGCGGCGGGATCACCGACGCGAGCGAGTTCGAGTCCGAAAAGGAGAACAA TGAGGACTTTGCCCTATGGAAGGTTTTCCACTTTTGGCGACGTTATTTTC CTGCCGTTTTGACCGACTCTGAGCTAACGCTACATTATTCGGAAAGAAAC GCGGGCAGCACGCACGTGCTCATTCGCGGCGCTCGCAACGTTTTGTATCA TTCAAGAGAAGACAGTAAGGTAGCGCTACGACGGACTCATTCAACGGCGC GTGTGGAGCAGAAGTATTGGTGTTGTGGCGCGTCTTGTTTCGATCGGCCC TTTCATCTATATCACCGCACCGCCTTGTCAAACCTTAAAAAAAAAAAACA CGCCTGGACATAGGCGTACAAACCCGAAGACGGCGACGTTTTCTGGGAAA CCTCGCTGGGCAAGGGGCGACCCGGATGGCATATCGAGTGTAGCGCGATG GCGCGGCGATTCCTCGGCGACACAGTCGATCTCCATGCGGGAGGGATCGA CCTGGTGTTTCCACACCACGAGAATGAGATCGCGCAGTCCGAGGGGTTTA CG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20791:3104..6605+

>mRNA_H-elongata_contig20791.5986.1 ID=mRNA_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig20791:3104..6605+ (Himanthalia elongata Himel1 dioecious)
ATGGAGCTGGAGGCAGCAAAGGAGCCCGGGGAGAAGGATAGGGACGCGGA
CACAGACGCAGAGGCGGGGCTGCGACTGTTCAACACGGACGGTCGTGCGA
AGCAACGTTTCCGACCACGGGACAAGAGATGGAGCTGGAGGCAGCAAAGG
AGCCCGGGGAGAAGGATAGGGACGCGGACACAGACGCAGAGGCGGGGCTG
CGACTGTTCAACACGGACGGTCGTGCGAAGCAACGTTTCCGACCACGGGA
CAAGAGGAGAGTTAAATTCTATAGCTGCGGTCCGACGGTGTACGACATGG
CGCACATCGGAAACTTCAGGGCTTTCCTGACCTACGACGTCCTCAAGCGG
TGGCTGCTCTACCAAGGGAGAGTTAAATTCTATAGCTGCGGTCCGACGGT
GTACGACATGGCGCACATCGGAAACTTCAGGGCTTTCCTGACCTACGACG
TCCTCAAGCGGTGGCTGCTCTACCAAGGCTACGAGGTAGACCACGTATGC
AACCTGACGGACGTGGACGACAAGATCATTGGCCGCATGGCGCGAGACGG
CGTGACTCTCAGGGACCTCACCAACAAGTACGCATCGCTGTTCTTCGAGG
ACCTCGGGTCGCTCAACATCATCCCCGCATCCCGTTACCCTCGGGCAACG
GAGCACATCGGCGATATCGTGGAGATGGTGCAGCTACGAGGTAGACCACG
TATGCAACCTGACGGACGTGGACGACAAGATCATTGGCCGCATGGCGCGA
GACGGCGTGACTCTCAGGGACCTCACCAACAAGTACGCATCGCTGTTCTT
CGAGGACCTCGGGTCGCTCAACATCATCCCCGCATCCCGTTACCCTCGGG
CAACGGAGCACATCGGCGATATCGTGGAGATGGTGCAGGGCCTCGTGGAC
AAGGGGCTGGCGTACGCGTCGAACGGGTCGGTGTACTTCAGGGTGTCCAA
GCACGGCAAGTACGGGTGTCTCGCCGGTCTCGACAGGCCTGGTATGCAGG
GCCTCGTGGACAAGGGGCTGGCGTACGCGTCGAACGGGTCGGTGTACTTC
AGGGTGTCCAAGCACGGCAAGTACGGGTGTCTCGCCGGTCTCGACAGGCC
TGGTATGCAGGATGGTGCTGGGGAAGGCGGCGGGATCACCGACGCGAGCG
AGTTCGAGTCCGAAAAGGAGAACAATGAGGACTTTGCCCTATGGAAGGAT
GGTGCTGGGGAAGGCGGCGGGATCACCGACGCGAGCGAGTTCGAGTCCGA
AAAGGAGAACAATGAGGACTTTGCCCTATGGAAGGCGTACAAACCCGAAG
ACGGCGACGTTTTCTGGGAAACCTCGCTGGGCAAGGGGCGACCCGGATGG
CATATCGAGTGTAGCGCGATGGCGCGGCGATTCCTCGGCGACACAGTCGA
TCTCCATGCGGGAGGGATCGACCTGGTGTTTCCACACCACGAGAATGAGA
TCGCGCAGTCCGAGGGGTTTACGGCGTACAAACCCGAAGACGGCGACGTT
TTCTGGGAAACCTCGCTGGGCAAGGGGCGACCCGGATGGCATATCGAGTG
TAGCGCGATGGCGCGGCGATTCCTCGGCGACACAGTCGATCTCCATGCGG
GAGGGATCGACCTGGTGTTTCCACACCACGAGAATGAGATCGCGCAGTCC
GAGGGGTTTACG
back to top