mRNA_H-elongata_contig20791.5986.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: D7FX39_ECTSI (Cysteine--tRNA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX39_ECTSI) HSP 1 Score: 461 bits (1186), Expect = 1.290e-158 Identity = 219/268 (81.72%), Postives = 242/268 (90.30%), Query Frame = 1
Query: 49 GEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
GE A + E+GL LFNT+GR K+RFRP+D+RRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG+EVDHVCNLTDVDDKII RMARDGV+L +LT KYA LFF+DL SLNI+PASRYPRATEHI DIVEMVQGL+DK LAY NGSVYFRVSKHGKYG LA LD GM+DGAGEGGG+ DA+EFESEKE+ +DFALWK YKPEDG+VFW+T LGKGRPGWHIECSAMAR+FLGDT+D+HAGGIDLVFPHHENE+AQSEGFT
Sbjct: 5 GEGGGGAGAEVESGLMLFNTEGRTKERFRPQDRRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIVPASRYPRATEHIDDIVEMVQGLIDKELAYKVNGSVYFRVSKHGKYGTLACLDTSGMEDGAGEGGGVNDAAEFESEKEDAKDFALWKGYKPEDGEVFWDTLLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFT 272
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A6H5J887_9PHAE (Cysteine--tRNA ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J887_9PHAE) HSP 1 Score: 440 bits (1131), Expect = 1.760e-142 Identity = 224/315 (71.11%), Postives = 248/315 (78.73%), Query Frame = 1
Query: 1 PRSSSLLMELEAAKEPGEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKR----RVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG---------------------------YEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
PRSSSLL+ A + E+GL LFNT+GR K+RFRP+D+R RVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQG +EVDHVCNLTDVDDKII RMARDGV+L +LT KYA LFF+DL SLNIIPASRYPRATEHI DIVEMVQGL+DK LAY NGSVYFRVSKH KYG LA LD GM+DGAGEGGG+ DA++FESEKE+ +DFALWK YKPEDG+VFW+TSLGKGRPGWHIECSAMAR+FLGDT+D+HAGGIDLVFPHHENE+AQSEGFT
Sbjct: 658 PRSSSLLVMGGAXXXXXXXX----AEVESGLMLFNTEGRTKERFRPQDRRQDFGRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGPTTTPCMTMSTPPPNIRLRSWSLVPPSFEVDHVCNLTDVDDKIIARMARDGVSLEELTGKYAKLFFDDLESLNIIPASRYPRATEHIDDIVEMVQGLIDKELAYEVNGSVYFRVSKHDKYGALACLDTSGMEDGAGEGGGVNDAADFESEKEDAKDFALWKGYKPEDGEVFWDTSLGKGRPGWHIECSAMARKFLGDTLDVHAGGIDLVFPHHENEVAQSEGFT 968
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A835ZDL4_9STRA (Cysteine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDL4_9STRA) HSP 1 Score: 409 bits (1051), Expect = 1.110e-138 Identity = 188/256 (73.44%), Postives = 224/256 (87.50%), Query Frame = 1
Query: 85 AGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
A L+L+NT R K+ RP +R+ FYSCGPTVYD AHIGNFRAFLTYDVLKRWL Y+G+EVDHVCNLTD+DDKII RMARDGV LR+LT++YA+LFFEDL +LN++PA YPRAT+H+ +IVEMVQ L++KGLAY +NGS+YFRV++H YG LA L GMQDGAGEGGGI+D E+E++KE+ +DFALWKAYKPEDG VFWET+LGKGRPGWHIECSAMAR++LGDT+D+HAGGIDLVFPHHENE+AQSEG T
Sbjct: 9 AKLQLYNTAARTKEPLRPLSGKRIAFYSCGPTVYDHAHIGNFRAFLTYDVLKRWLTYRGFEVDHVCNLTDIDDKIIRRMARDGVGLRELTDRYAALFFEDLAALNVVPARAYPRATDHVAEIVEMVQTLLEKGLAYENNGSIYFRVARHSGYGALANLKFEGMQDGAGEGGGISDLDEYETDKESAKDFALWKAYKPEDGPVFWETALGKGRPGWHIECSAMARKYLGDTIDIHAGGIDLVFPHHENEVAQSEGAT 264
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: W7U426_9STRA (Cysteine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U426_9STRA) HSP 1 Score: 382 bits (980), Expect = 1.030e-126 Identity = 182/252 (72.22%), Postives = 211/252 (83.73%), Query Frame = 1
Query: 91 LRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEG 846
+L+NT R K+ F+ +V FYSCGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+V+HVCNLTDVDDKII RMARDG++L +LT+K+A +FFEDL +LN++PAS YPRATEHI DIV MVQ LVD+G AY S GS YFRVS+ YG LA LD GM+ GA +GGGI+DA E+ ++K + +DFALWKAYK EDG VFWET+LGKGRPGWHIECSAMARRFLG TVDLHAGG+DLVFPHHENEIAQSEG
Sbjct: 90 FQLYNTASRKKEPFKTGQPGKVSFYSCGPTIYDFAHIGNFRAFLTYDVLKRWLLYSGYDVEHVCNLTDVDDKIIKRMARDGLSLPELTDKFARVFFEDLQALNVLPASHYPRATEHIQDIVSMVQALVDRGYAYESQGSFYFRVSRFPSYGSLAKLDFSGMEMGAAKGGGISDADEYVADKGDAKDFALWKAYKAEDGPVFWETALGKGRPGWHIECSAMARRFLGPTVDLHAGGVDLVFPHHENEIAQSEG 341
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S0CUB0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CUB0_9EUKA) HSP 1 Score: 358 bits (918), Expect = 6.730e-122 Identity = 167/256 (65.23%), Postives = 207/256 (80.86%), Query Frame = 1
Query: 91 LRLFNTDGRAKQRFRPRDK--RRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
LRL+NT R K +F P D ++VKFYSCGPTVYD AHIGNFRAFLTYD++KRWLLY GY+VDHVCNLTD+DDKI+ RM RD ++L+DLTNKY+ LFF+DL SLN+IPA+RYP+AT+HI +IV M+Q L++K AY SVYFR S YGCL+G++ G +G GEGG ++F EK++++DF LWKAYKPEDGDV W T++G GRPGWHIECSAMA+++LGDT+DLHAGG+DLVFPHHENE AQ+E T
Sbjct: 1 LRLYNTAQREKIKFEPLDPEGKKVKFYSCGPTVYDFAHIGNFRAFLTYDLIKRWLLYLGYDVDHVCNLTDIDDKILQRMKRDDISLKDLTNKYSDLFFQDLASLNVIPATRYPKATDHIDEIVAMIQTLIEKDKAYRVGDSVYFRTSAFESYGCLSGMNLEGNVEGQGEGG-----NKFLGEKQDSKDFVLWKAYKPEDGDVVWNTAIGNGRPGWHIECSAMAQKYLGDTLDLHAGGVDLVFPHHENEKAQTEAAT 251
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S0EPZ0_9CRYP (Cysteine--tRNA ligase (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EPZ0_9CRYP) HSP 1 Score: 363 bits (932), Expect = 4.410e-121 Identity = 176/256 (68.75%), Postives = 203/256 (79.30%), Query Frame = 1
Query: 88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
G +++NT R K+ F P D R VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GYEVDH+CNLTDVDDKII RM RD V L++LT K+A FF+DL LNIIPA +YPRATEHI DIV+M+ GLV+KG AY +GS YF VS YG LA LD M DGA EGGGITD FE K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct: 93 GFKIYNTLSRDKETFEPMCEDGRTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYEVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVDMINGLVEKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMLDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVAWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 346
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: L1I7X3_GUITC (Cysteine--tRNA ligase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I7X3_GUITC) HSP 1 Score: 362 bits (929), Expect = 4.540e-121 Identity = 175/256 (68.36%), Postives = 202/256 (78.91%), Query Frame = 1
Query: 88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
G +++NT R K+ F P D + VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+VDH+CNLTDVDDKII RM RD V L++LT K+A FF+DL LNIIPA +YPRATEHI DIVEM+ GLV KG AY +GS YF VS YG LA LD M DGA EGGGITD FE K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct: 21 GFKIYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVEMINGLVQKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMMDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 274
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S4UT40_GUITH (Cysteine--tRNA ligase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4UT40_GUITH) HSP 1 Score: 362 bits (929), Expect = 8.590e-119 Identity = 175/256 (68.36%), Postives = 202/256 (78.91%), Query Frame = 1
Query: 88 GLRLFNTDGRAKQRFRP--RDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGF 849
G +++NT R K+ F P D + VK Y+CGPT+YD AHIGNFRAFLTYDVLKRWLLY GY+VDH+CNLTDVDDKII RM RD V L++LT K+A FF+DL LNIIPA +YPRATEHI DIVEM+ GLV KG AY +GS YF VS YG LA LD M DGA EGGGITD FE K++++DFALWKAYKPEDG+V WET L KGRPGWHIECSAM+RR+LGD+ D+HAGG+DL FPHHENEIAQSE +
Sbjct: 127 GFKIYNTLSRDKETFEPMCEDGKTVKMYTCGPTIYDFAHIGNFRAFLTYDVLKRWLLYCGYDVDHICNLTDVDDKIIQRMKRDNVGLKELTEKFADAFFDDLKRLNIIPARKYPRATEHIDDIVEMINGLVQKGNAYEKDGSYYFDVSSFPDYGKLARLDFDNMMDGASEGGGITDREGFE--KKSSKDFALWKAYKPEDGEVTWETKLSKGRPGWHIECSAMSRRYLGDSFDIHAGGVDLTFPHHENEIAQSEAY 380
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A7S2S4N2_9STRA (Cysteine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4N2_9STRA) HSP 1 Score: 357 bits (916), Expect = 1.640e-118 Identity = 171/246 (69.51%), Postives = 199/246 (80.89%), Query Frame = 1
Query: 115 RAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
R+K+ F P +V FYSCGPTVYD AHIGNFRAFLTYDVLKRWL + G++V+HVCNLTD+DDKII R+ARDGV+L++LT+KYA+ FFEDL +LN++PA YPRATE+IG I +MV+ L+ AY NGS YF VSK KYG LA LD GMQDGA EGGG++ + +FE K + DFALWKAYKP+DGDV W TSLGKGRPGWHIECSAM R F GD+VDLHAGGIDLVFPHHENEIAQSE T
Sbjct: 2 RSKEPFSPECPPKVSFYSCGPTVYDFAHIGNFRAFLTYDVLKRWLTFLGFDVEHVCNLTDIDDKIIARIARDGVSLQELTDKYAAAFFEDLDALNVMPADAYPRATEYIGPIEDMVKSLLSSSAAYEENGSYYFDVSKSAKYGRLARLDIEGMQDGASEGGGMSSSEDFE--KRSPRDFALWKAYKPQDGDVSWTTSLGKGRPGWHIECSAMIREFFGDSVDLHAGGIDLVFPHHENEIAQSEAVT 245
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Match: A0A2V3J570_9FLOR (Cysteine--tRNA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J570_9FLOR) HSP 1 Score: 306 bits (784), Expect = 5.980e-98 Identity = 150/257 (58.37%), Postives = 186/257 (72.37%), Query Frame = 1
Query: 82 EAGLRLFNTDGRAKQRFRPRDKRRVKFYSCGPTVYDMAHIGNFRAFLTYDVLKRWLLYQGYEVDHVCNLTDVDDKIIGRMARDGVTLRDLTNKYASLFFEDLGSLNIIPASRYPRATEHIGDIVEMVQGLVDKGLAYASNGSVYFRVSKHGKYGCLAGLDRPGMQDGAGEGGGITDASEFESEKENNEDFALWKAYKPEDGDVFWETSLGKGRPGWHIECSAMARRFLGDTVDLHAGGIDLVFPHHENEIAQSEGFT 852
E+ L FN+ R K+ F+ + V+FYSCGPTVYD AHIGNFRAFLTYDV+KRWL+++GY V HV NLTDVDDKII R+ R+ + ++LT++Y++ FF+DL LN+IPA YPRAT+HI I V GL +G AY GS YF VS YG LA LDR ++ + +D+ E++ K++ DFALWK YKPEDGDV+W SLGKGRPGWHIECS MA +LG +D+HAGGIDLVFPHHENEIAQSE T
Sbjct: 52 ESELVFFNSLTRQKEPFKTVEPGVVRFYSCGPTVYDYAHIGNFRAFLTYDVIKRWLIFKGYTVRHVMNLTDVDDKIIARVQREKCSAKELTDRYSNAFFDDLKLLNVIPADHYPRATQHIEHIETFVNGLKKRGYAYERQGSTYFSVSSFSDYGRLAQLDRRQCENAS-----ASDSDEYD--KDDIRDFALWKTYKPEDGDVYWNNSLGKGRPGWHIECSCMAMEYLGSELDIHAGGIDLVFPHHENEIAQSEALT 301 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20791.5986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20791.5986.1 >prot_H-elongata_contig20791.5986.1 ID=prot_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=277bp MELEAAKEPGEKDRDADTDAEAGLRLFNTDGRAKQRFRPRDKRRVKFYSCback to top mRNA from alignment at H-elongata_contig20791:3104..6605+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20791.5986.1 ID=mRNA_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3502bp|location=Sequence derived from alignment at H-elongata_contig20791:3104..6605+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20791:3104..6605+ >mRNA_H-elongata_contig20791.5986.1 ID=mRNA_H-elongata_contig20791.5986.1|Name=mRNA_H-elongata_contig20791.5986.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1662bp|location=Sequence derived from alignment at H-elongata_contig20791:3104..6605+ (Himanthalia elongata Himel1 dioecious)back to top |