mRNA_H-elongata_contig207908.5985.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207908.5985.1
Unique NamemRNA_H-elongata_contig207908.5985.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207908.5985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207908contigH-elongata_contig207908:55..451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.9454327-CDS-H-elongata_contig207908:54..2281622930161.9454327-CDS-H-elongata_contig207908:54..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207908 55..228 -
1691679304.9547725-CDS-H-elongata_contig207908:54..2281691679304.9547725-CDS-H-elongata_contig207908:54..228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207908 55..228 -
1622930161.968634-CDS-H-elongata_contig207908:415..4511622930161.968634-CDS-H-elongata_contig207908:415..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207908 416..451 -
1691679304.9653678-CDS-H-elongata_contig207908:415..4511691679304.9653678-CDS-H-elongata_contig207908:415..451Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207908 416..451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207908.5985.1prot_H-elongata_contig207908.5985.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207908 55..451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207908.5985.1

>prot_H-elongata_contig207908.5985.1 ID=prot_H-elongata_contig207908.5985.1|Name=mRNA_H-elongata_contig207908.5985.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
AEDGGRGVGELEVDIPVVDAKTSSASTSPRAVSLSVPALANIGVEISVGS
KVNDPNDETVVLAELENPAS
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mRNA from alignment at H-elongata_contig207908:55..451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207908.5985.1 ID=mRNA_H-elongata_contig207908.5985.1|Name=mRNA_H-elongata_contig207908.5985.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=397bp|location=Sequence derived from alignment at H-elongata_contig207908:55..451- (Himanthalia elongata Himel1 dioecious)
GCGGAAGACGGCGGTCGAGGCGTTGGAGAACTCGAGGTGTGTCTTGAGGG
GAGGGACTTGTTGCCTTCAACCAGGTTTGTACTTGGTTAAATGGCTGTAG
TTTTCGCGTGATGAACACTTCTTGTCCTAGTGTTTCTTTTGTTCTGTTTT
CCTAAGAGCCCCTGAATATTGTTTTGTGCCTTATGATTGAGGATTTTATG
TTTTCTTGCGATGCTCTCCGCAGGTGGACATACCTGTTGTCGACGCGAAA
ACCTCCTCTGCTTCGACGTCCCCACGGGCCGTTTCGCTCTCTGTTCCCGC
ACTGGCGAATATTGGAGTCGAGATCTCCGTCGGAAGCAAAGTCAATGATC
CAAACGACGAGACAGTAGTCTTGGCCGAACTTGAAAATCCCGCATCG
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Coding sequence (CDS) from alignment at H-elongata_contig207908:55..451-

>mRNA_H-elongata_contig207908.5985.1 ID=mRNA_H-elongata_contig207908.5985.1|Name=mRNA_H-elongata_contig207908.5985.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig207908:55..451- (Himanthalia elongata Himel1 dioecious)
GCGGAAGACGGCGGTCGAGGCGTTGGAGAACTCGAGGCGGAAGACGGCGG
TCGAGGCGTTGGAGAACTCGAGGTGGACATACCTGTTGTCGACGCGAAAA
CCTCCTCTGCTTCGACGTCCCCACGGGCCGTTTCGCTCTCTGTTCCCGCA
CTGGCGAATATTGGAGTCGAGATCTCCGTCGGAAGCAAAGTCAATGATCC
AAACGACGAGACAGTAGTCTTGGCCGAACTTGAAAATCCCGCATCGGTGG
ACATACCTGTTGTCGACGCGAAAACCTCCTCTGCTTCGACGTCCCCACGG
GCCGTTTCGCTCTCTGTTCCCGCACTGGCGAATATTGGAGTCGAGATCTC
CGTCGGAAGCAAAGTCAATGATCCAAACGACGAGACAGTAGTCTTGGCCG
AACTTGAAAATCCCGCATCG
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