mRNA_H-elongata_contig207895.5984.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207895.5984.1
Unique NamemRNA_H-elongata_contig207895.5984.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 4.690e-24
Identity = 48/54 (88.89%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 MLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLR 165
            MLKRGEVVKDRWR+E+RLGKGTFCELHRASDLT+K+ GAAVKVEVQGMQRSVL+
Sbjct:    1 MLKRGEVVKDRWRIEERLGKGTFCELHRASDLTRKSEGAAVKVEVQGMQRSVLK 54
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: D8LQZ6_ECTSI (Casein kinase (Serine/threonine/tyrosine protein kinase) (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 3.390e-22
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 1 
Query:    4 MLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLR 165
            MLKRGEVVKDRW +E+RLGKGTFCELHRASDLT  + GAAVKVEVQGMQRSVL+
Sbjct:   46 MLKRGEVVKDRWLIEERLGKGTFCELHRASDLTGNSEGAAVKVEVQGMQRSVLK 99
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: A0A443STW2_9ACAR (Tau-tubulin kinase 2-like protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443STW2_9ACAR)

HSP 1 Score: 50.4 bits (119), Expect = 1.230e-5
Identity = 26/62 (41.94%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    1 DMLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLRVRWPALR 186
            D+LK G++VKDRWRV +R+G G F E++ A DL  +    A+K+E    Q+ VL++    L+
Sbjct:   17 DLLKCGQLVKDRWRVIKRIGGGGFGEIYEALDLITREH-VAMKLESSQQQKQVLKMEVAVLK 77
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: A0A0K0E2E2_STRER (Protein kinase domain-containing protein n=3 Tax=Strongyloides TaxID=6247 RepID=A0A0K0E2E2_STRER)

HSP 1 Score: 50.1 bits (118), Expect = 1.800e-5
Identity = 21/62 (33.87%), Postives = 39/62 (62.90%), Query Frame = 1 
Query:    1 DMLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLRVRWPALR 186
            ++L+  +V+++RW+++Q++G G F E++ A+DL       AVKVE     + VL++    LR
Sbjct:    8 ELLQSNQVIRERWKIKQKIGGGGFGEIYEANDLQNHNERVAVKVESSKATKQVLKMEVAVLR 69
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: A0A1I8AG99_9BILA (Protein kinase domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AG99_9BILA)

HSP 1 Score: 48.5 bits (114), Expect = 5.840e-5
Identity = 20/62 (32.26%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 DMLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLRVRWPALR 186
            ++L+  +V++DRW+++Q++G G F E++ A D+       A+KVE     + VL++    LR
Sbjct:    8 EILQASQVIRDRWKIKQKVGGGGFGEIYEALDIQNHNERVAIKVESSKATKQVLKMEVAVLR 69
[Close]
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Match: A0A4V6A4J7_STECR (Protein kinase domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4V6A4J7_STECR)

HSP 1 Score: 48.1 bits (113), Expect = 8.630e-5
Identity = 19/62 (30.65%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    1 DMLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQRSVLRVRWPALR 186
            ++L+  ++++DRW+++Q++G G F E++ A D+       A+KVE     + VL++    LR
Sbjct:    8 EILQASQIIRDRWKIKQKVGGGGFGEIYEALDIQNHNERVAIKVESSKATKQVLKMEVAVLR 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207895.5984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L231_9PHAE4.690e-2488.89Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LQZ6_ECTSI3.390e-2285.19Casein kinase (Serine/threonine/tyrosine protein k... [more]
A0A443STW2_9ACAR1.230e-541.94Tau-tubulin kinase 2-like protein n=1 Tax=Leptotro... [more]
A0A0K0E2E2_STRER1.800e-533.87Protein kinase domain-containing protein n=3 Tax=S... [more]
A0A1I8AG99_9BILA5.840e-532.26Protein kinase domain-containing protein n=1 Tax=S... [more]
A0A4V6A4J7_STECR8.630e-530.65Protein kinase domain-containing protein n=1 Tax=S... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207895contigH-elongata_contig207895:372..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size186
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.8868678-UTR-H-elongata_contig207895:371..3741622930161.8868678-UTR-H-elongata_contig207895:371..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207895 372..374 +
1691679304.927161-UTR-H-elongata_contig207895:371..3741691679304.927161-UTR-H-elongata_contig207895:371..374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207895 372..374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.9016898-CDS-H-elongata_contig207895:374..5601622930161.9016898-CDS-H-elongata_contig207895:374..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207895 375..560 +
1691679304.935984-CDS-H-elongata_contig207895:374..5601691679304.935984-CDS-H-elongata_contig207895:374..560Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207895 375..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207895.5984.1prot_H-elongata_contig207895.5984.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207895 375..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207895.5984.1

>prot_H-elongata_contig207895.5984.1 ID=prot_H-elongata_contig207895.5984.1|Name=mRNA_H-elongata_contig207895.5984.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MLKRGEVVKDRWRVEQRLGKGTFCELHRASDLTKKTPGAAVKVEVQGMQR
SVLRVRWPALR*
back to top

mRNA from alignment at H-elongata_contig207895:372..560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207895.5984.1 ID=mRNA_H-elongata_contig207895.5984.1|Name=mRNA_H-elongata_contig207895.5984.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig207895:372..560+ (Himanthalia elongata Himel1 dioecious)
GATATGTTGAAGCGCGGGGAGGTGGTCAAGGACCGGTGGCGGGTAGAGCA
GCGGCTGGGAAAGGGCACCTTCTGCGAGCTGCACCGGGCGTCCGACCTCA
CGAAGAAGACTCCAGGAGCGGCGGTCAAGGTGGAGGTCCAGGGCATGCAG
CGTTCTGTTCTCAGGGTGAGGTGGCCTGCGCTACGCTAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig207895:372..560+

>mRNA_H-elongata_contig207895.5984.1 ID=mRNA_H-elongata_contig207895.5984.1|Name=mRNA_H-elongata_contig207895.5984.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig207895:372..560+ (Himanthalia elongata Himel1 dioecious)
ATGTTGAAGCGCGGGGAGGTGGTCAAGGACCGGTGGCGGGTAGAGCAGCG
GCTGGGAAAGGGCACCTTCTGCGAGCTGCACCGGGCGTCCGACCTCACGA
AGAAGACTCCAGGAGCGGCGGTCAAGGTGGAGGTCCAGGGCATGCAGCGT
TCTGTTCTCAGGGTGAGGTGGCCTGCGCTACGCTAGATGTTGAAGCGCGG
GGAGGTGGTCAAGGACCGGTGGCGGGTAGAGCAGCGGCTGGGAAAGGGCA
CCTTCTGCGAGCTGCACCGGGCGTCCGACCTCACGAAGAAGACTCCAGGA
GCGGCGGTCAAGGTGGAGGTCCAGGGCATGCAGCGTTCTGTTCTCAGGGT
GAGGTGGCCTGCGCTACGCTAG
back to top