mRNA_H-elongata_contig207882.5983.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207882.5983.1
Unique NamemRNA_H-elongata_contig207882.5983.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: A0A8B7EA18_HYDVU (zinc finger BED domain-containing protein DAYSLEEPER-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B7EA18_HYDVU)

HSP 1 Score: 80.1 bits (196), Expect = 8.980e-17
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   85 EVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            E+EL  Y  +P   P SS   +++WW  H    PLL++V   YLA+P  SASSER+FS AG+VVT  R +L+P++V ++++LH
Sbjct:   16 EIELDTYKGLPR--PDSSNTDIIKWWEAHAKRIPLLFQVARKYLAIPLTSASSERVFSAAGSVVTDSRLKLNPQNVGKIVYLH 96          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: UPI001471CDEF (zinc finger BED domain-containing protein 1-like n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI001471CDEF)

HSP 1 Score: 82.4 bits (202), Expect = 3.570e-16
Identity = 40/83 (48.19%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   85 EVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            E E+ RY Q  T      G   L WW +H+ E+PLL R+   YL +P  S SSER+FSTAG++VT +R+ L+PE V +L+FLH
Sbjct:  320 EEEITRYKQ--TAPMSLVGGNPLSWWKEHQTEYPLLSRLAKTYLCIPGTSVSSERVFSTAGDIVTAQRSALNPEHVDQLLFLH 400          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: UPI001113C14C (zinc finger BED domain-containing protein 1-like n=1 Tax=Acyrthosiphon pisum TaxID=7029 RepID=UPI001113C14C)

HSP 1 Score: 77.4 bits (189), Expect = 4.280e-16
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   97 LRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            LRYD     DP        EWW  H  ++PL+  +   YL++PA S SSER FSTAGNVVT KRN L+PE+V  L+FL+
Sbjct:   48 LRYD----FDP-------FEWWKSHEKKYPLIAELVKKYLSIPATSVSSERCFSTAGNVVTSKRNCLAPENVNMLVFLY 115          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: A0A2S2P4C5_SCHGA (Zinc finger BED domain-containing protein 1 (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2P4C5_SCHGA)

HSP 1 Score: 77.0 bits (188), Expect = 4.320e-16
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 1
Query:   97 LRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            LRYD     DP        EWW  H  ++PL+ +V   +L++PA S SSER FSTAGNVVT KRN L+PE+V  L+FL+
Sbjct:   31 LRYD----FDP-------FEWWKSHEKKYPLVAKVAKKFLSIPATSVSSERCFSTAGNVVTPKRNCLAPENVNMLVFLY 98          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: UPI002013D797 (E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI002013D797)

HSP 1 Score: 82.0 bits (201), Expect = 6.520e-16
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   55 TIAARIAQ-KAEVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            T+  R  Q +AE E+ RY + P L         L WW +H++E+PL+ R+  VYL +P  S SSER+FSTAG++VT +R+ LS + V +L+FL+
Sbjct:  567 TVRHRTTQAQAEEEMSRYKEAPPLSLAEGSP--LSWWKEHQNEYPLMSRLAKVYLCIPGTSVSSERVFSTAGDIVTAQRSVLSSKHVDQLLFLN 658          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: A0A1A7XRV2_9TELE (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Iconisemion striatum TaxID=60296 RepID=A0A1A7XRV2_9TELE)

HSP 1 Score: 78.6 bits (192), Expect = 7.250e-16
Identity = 40/87 (45.98%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   73 AQKAEVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            A +AE E+ RY      +P    +  L WW  +  E+PLL R+   YL VP  S +SER+FSTAG++VT KR+ LSP+ V  L+FLH
Sbjct:   94 AMRAEDEIQRYR---VENPAGLNENPLTWWRSNEREYPLLARLAKQYLCVPGTSIASERVFSTAGDIVTAKRSCLSPDHVNELLFLH 177          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: E2BS40_HARSA (Zinc finger BED domain-containing protein 1 (Fragment) n=2 Tax=Harpegnathos saltator TaxID=610380 RepID=E2BS40_HARSA)

HSP 1 Score: 75.1 bits (183), Expect = 1.010e-15
Identity = 36/61 (59.02%), Postives = 47/61 (77.05%), Query Frame = 1
Query:  151 LEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            L+WW  H + +P++  +T VYLA+ A SASSER+FSTAGN+VT KRN LS E+V  LIFL+
Sbjct:    3 LKWWKAHENLYPMIAALTKVYLAILASSASSERVFSTAGNIVTAKRNCLSTENVNLLIFLN 63          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: A0A1A8JIY1_NOTKU (Dimer_Tnp_hAT domain-containing protein (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8JIY1_NOTKU)

HSP 1 Score: 76.3 bits (186), Expect = 2.300e-15
Identity = 41/85 (48.24%), Postives = 56/85 (65.88%), Query Frame = 1
Query:   79 KAEVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            +AE E+  Y + P+L P S     L WW  H+  FPLL R++  YL +P  S S+ER+FSTAG+VVT KR+ L P+ V +L+FLH
Sbjct:   54 RAEEEMDNYLKTPSL-PLSEDP--LNWWRVHKVAFPLLARLSERYLCIPGTSGSAERVFSTAGDVVTAKRSTLKPQHVDQLVFLH 135          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: A0A0A1WDS8_ZEUCU (Transposable element Hobo transposase n=1 Tax=Zeugodacus cucurbitae TaxID=28588 RepID=A0A0A1WDS8_ZEUCU)

HSP 1 Score: 75.9 bits (185), Expect = 3.910e-15
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  148 MLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFLH 333
            +L+WW  + + +PLL +V   +L +PA SA +ER+FS AGNV+T+KRNRL P SV  L+FLH
Sbjct:   81 VLKWWGVNENRYPLLSKVALKFLTIPASSAPAERVFSLAGNVITEKRNRLGPTSVDNLLFLH 142          
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Match: UPI000CF7E595 (zinc finger BED domain-containing protein 1-like n=1 Tax=Oryzias melastigma TaxID=30732 RepID=UPI000CF7E595)

HSP 1 Score: 78.2 bits (191), Expect = 6.000e-15
Identity = 38/91 (41.76%), Postives = 57/91 (62.64%), Query Frame = 1
Query:   58 IAARIAQKAEVELLRYDQVPTLDPGSSGKRMLEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLSPESVQRLIFL 330
            +    + KAE EL +Y + P L   S  +  L+WW  H   FPLL ++   YL +P  S ++ER+FSTAG++VT +R+ LSP+ V +L+FL
Sbjct:  196 VPKTTSTKAEEELKKYLEAPPL---SLAENPLKWWSSHEAAFPLLGKLAKRYLCIPGTSVAAERVFSTAGDIVTAQRSNLSPDHVDQLVFL 283          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207882.5983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8B7EA18_HYDVU8.980e-1745.78zinc finger BED domain-containing protein DAYSLEEP... [more]
UPI001471CDEF3.570e-1648.19zinc finger BED domain-containing protein 1-like n... [more]
UPI001113C14C4.280e-1650.63zinc finger BED domain-containing protein 1-like n... [more]
A0A2S2P4C5_SCHGA4.320e-1650.63Zinc finger BED domain-containing protein 1 (Fragm... [more]
UPI002013D7976.520e-1643.62E3 SUMO-protein ligase ZBED1-like n=1 Tax=Megalobr... [more]
A0A1A7XRV2_9TELE7.250e-1645.98Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
E2BS40_HARSA1.010e-1559.02Zinc finger BED domain-containing protein 1 (Fragm... [more]
A0A1A8JIY1_NOTKU2.300e-1548.24Dimer_Tnp_hAT domain-containing protein (Fragment)... [more]
A0A0A1WDS8_ZEUCU3.910e-1553.23Transposable element Hobo transposase n=1 Tax=Zeug... [more]
UPI000CF7E5956.000e-1541.76zinc finger BED domain-containing protein 1-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207882contigH-elongata_contig207882:107..439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score76.6
Seed ortholog evalue7.9e-12
Seed eggNOG ortholog7029.ACYPI46761-PA
EggNOG free text desc.RNA polymerase II regulatory region DNA binding
EggNOG OGs39TTD@33154,3BCXB@33208,3CYBV@33213,3SQPW@50557,421ZD@6656,KOG1121@1,KOG1121@2759
COG Functional cat.L
Best tax levelInsecta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.842595-CDS-H-elongata_contig207882:106..4391622930161.842595-CDS-H-elongata_contig207882:106..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207882 107..439 +
1691679304.9135551-CDS-H-elongata_contig207882:106..4391691679304.9135551-CDS-H-elongata_contig207882:106..439Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207882 107..439 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207882.5983.1prot_H-elongata_contig207882.5983.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207882 107..439 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207882.5983.1

>prot_H-elongata_contig207882.5983.1 ID=prot_H-elongata_contig207882.5983.1|Name=mRNA_H-elongata_contig207882.5983.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MEDDDDPNGARESGENPQTIAARIAQKAEVELLRYDQVPTLDPGSSGKRM
LEWWVDHRHEFPLLYRVTCVYLAVPAISASSERIFSTAGNVVTKKRNRLS
PESVQRLIFLH
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mRNA from alignment at H-elongata_contig207882:107..439+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207882.5983.1 ID=mRNA_H-elongata_contig207882.5983.1|Name=mRNA_H-elongata_contig207882.5983.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=333bp|location=Sequence derived from alignment at H-elongata_contig207882:107..439+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGACGACGACGACCCCAATGGAGCAAGGGAATCCGGTGAGAACCC TCAGACCATCGCGGCTCGCATCGCCCAGAAGGCTGAGGTGGAACTGTTGC GATACGATCAGGTGCCCACCCTGGATCCGGGAAGCAGCGGCAAACGGATG CTCGAGTGGTGGGTCGACCACAGGCATGAATTCCCGCTGCTGTACAGGGT GACATGTGTCTACCTCGCAGTGCCCGCCATTTCAGCATCATCAGAGCGCA TTTTCTCTACAGCGGGGAACGTCGTGACGAAGAAGAGGAACAGACTGTCG CCCGAGTCTGTTCAAAGATTAATTTTCCTCCAT
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Coding sequence (CDS) from alignment at H-elongata_contig207882:107..439+

>mRNA_H-elongata_contig207882.5983.1 ID=mRNA_H-elongata_contig207882.5983.1|Name=mRNA_H-elongata_contig207882.5983.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig207882:107..439+ (Himanthalia elongata Himel1 dioecious)
ATGGAAGACGACGACGACCCCAATGGAGCAAGGGAATCCGGTGAGAACCC
TCAGACCATCGCGGCTCGCATCGCCCAGAAGGCTGAGGTGGAACTGTTGC
GATACGATCAGGTGCCCACCCTGGATCCGGGAAGCAGCGGCAAACGGATG
CTCGAGTGGTGGGTCGACCACAGGCATGAATTCCCGCTGCTGTACAGGGT
GACATGTGTCTACCTCGCAGTGCCCGCCATTTCAGCATCATCAGAGCGCA
TTTTCTCTACAGCGGGGAACGTCGTGACGAAGAAGAGGAACAGACTGTCG
CCCGAGTCTGTTCAAAGATTAATTTTCCTCCATATGGAAGACGACGACGA
CCCCAATGGAGCAAGGGAATCCGGTGAGAACCCTCAGACCATCGCGGCTC
GCATCGCCCAGAAGGCTGAGGTGGAACTGTTGCGATACGATCAGGTGCCC
ACCCTGGATCCGGGAAGCAGCGGCAAACGGATGCTCGAGTGGTGGGTCGA
CCACAGGCATGAATTCCCGCTGCTGTACAGGGTGACATGTGTCTACCTCG
CAGTGCCCGCCATTTCAGCATCATCAGAGCGCATTTTCTCTACAGCGGGG
AACGTCGTGACGAAGAAGAGGAACAGACTGTCGCCCGAGTCTGTTCAAAG
ATTAATTTTCCTCCAT
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