mRNA_H-elongata_contig20787.5981.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20787.5981.1
Unique NamemRNA_H-elongata_contig20787.5981.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.590e-53
Identity = 83/113 (73.45%), Postives = 98/113 (86.73%), Query Frame = 1
Query:   37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGL 375
            L R+ QLL GNPRPFVLYFS GSAL++CSSFFL+GPW+Q+KKMF PVR VATS+YL TL AT FVALS +A VP RG+LLL LV+AQF++YVWY+LSY+PFARRF  GFW+GL
Sbjct:   64 LFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGL 176          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA)

HSP 1 Score: 127 bits (319), Expect = 1.770e-34
Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 1
Query:   37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGG 360
            L R+ +L+ GNP PFV+ +S G+ +S+C+SFFL+GPW Q+KKMF P RVVAT VY+ TLG TF VAL+   R+P R  LL+ LV+ QF++++WY+LSYIPFAR +  G
Sbjct:   82 LFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S2XZK4_9STRA (Vesicle transport protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.490e-26
Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query:   43 RLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
            R+ QL+ G P PFV+++S G+ +S+C S FLSGPW Q+K+MFAP R  AT VYL TL  T  +A +    VP +G +LL+L I Q +A  WY LSYIP AR +
Sbjct:   21 RIMQLIRGRPIPFVVFYSLGNVVSLCGSMFLSGPWNQIKRMFAPTRAFATIVYLSTLVTTLTLAFTPG--VPFKGGILLILFIVQLLALFWYMLSYIPGARNY 121          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.180e-22
Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1
Query:    1 CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
            C F +  L +   +RL +L+ GNP PFV++++ G+ +++  S FLSGP  Q KKM+ P R +ATSVYL+T+  T FVA        GR  ++++ +  Q++A +WY++S+IP+AR +
Sbjct:   45 CFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAFYEGIPDDGRIGIIIMCIFIQWIAMLWYTISFIPYARDY 161          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A8J2SX58_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX58_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.590e-22
Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGLC 378
            L RL +LL G P+ FV+YF+FG+  ++ S FFLSGP    KKM  P R +AT+ YLIT+  TFFV         GR  ++++ V  Q++A +WY++S+IPFAR      W  +C
Sbjct:   52 LVRLKELLHGEPKNFVIYFTFGNLCAIASCFFLSGPKSHCKKMIDPTRRIATAFYLITIFFTFFVVFYEKIPDDGRVGIIILCVFIQWIAMLWYTISFIPFARD-----WVCMC 160          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: F0Y1E0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1E0_AURAN)

HSP 1 Score: 93.6 bits (231), Expect = 6.090e-22
Identity = 47/117 (40.17%), Postives = 73/117 (62.39%), Query Frame = 1
Query:    1 CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
            C F  L L     ++++ +L GNP PF +Y++FG+ +++  SFFLSGP  Q  KM    RVV+++VYL+ L AT F AL        R   LL  ++ Q++A +WY+LS++PFA+ +
Sbjct:   13 CFFTGLVLMFLANTKISAMLAGNPTPFGVYYTFGNLVAIVGSFFLSGPTAQFNKMTEGSRVVSSAVYLLALAATLFFALDDSLPKTPRLWCLLTAILVQYLALLWYTLSFVPFAQAY 129          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A0L0D642_THETB (Vesicle transport protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D642_THETB)

HSP 1 Score: 89.4 bits (220), Expect = 5.240e-20
Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   64 GNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
            G P  F + +S GS  ++ SS FL+GPW+Q+K M    R++A+SVY++ +G T + AL      P   +L+L+ +I QF+A +WY LSYIP+ARR
Sbjct:   61 GKPAAFAITYSLGSLCAIGSSAFLAGPWKQIKSMMKETRIIASSVYVVAIGFTLYFALG-----PNEPVLVLMCIIIQFLAGIWYCLSYIPYARR 150          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A1Y1IA24_KLENI (Vesicle transport protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA24_KLENI)

HSP 1 Score: 89.4 bits (220), Expect = 5.510e-20
Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query:   40 SRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
            S L+ L+  NP  F + ++FG+ LS+ S+ FL GP  QLK MF PVR VAT VY++ +  T F AL  H       LL ++ ++ +F A +WYSLSYIPFARR
Sbjct:   53 SLLSSLVWLNPVKFAITYTFGNLLSLGSTTFLVGPMRQLKMMFDPVRAVATIVYVVAIVLTLFCALYLHDI-----LLTMICIVVEFCAVIWYSLSYIPFARR 150          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S3MGJ6_9STRA (Vesicle transport protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGJ6_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 8.260e-20
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 1
Query:   43 RLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
            RL +L+ G+P PF   ++ G+ + + S+ FL GP  Q+K+MFAP R+VAT+VYL  +  T  +A      +P R + LL+ +  QF+A VWY+LSYIPFAR 
Sbjct:   68 RLIKLMEGDPEPFATMYTIGNIVGLFSTCFLYGPVSQVKQMFAPTRLVATAVYLFFMATTLLLAFYPE-YIPVRVMWLLISIFFQFLALVWYNLSYIPFARE 168          
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: UPI0007EF0AFD (vesicle transport protein SFT2B n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF0AFD)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-18
Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 1
Query:   37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGLC 378
            L  L+ ++  NP  F L F+FG+ +++ S+ FL GP +Q++ MF PVR+ AT++Y+  +      AL  H++V     L L+++I +  A++WYSLSYIPFARR        LC
Sbjct:   49 LMLLSLIVFANPIKFALLFTFGNLIAIGSTAFLIGPAQQIRMMFDPVRMYATTIYIGCVVLALICALLIHSKV-----LTLIVIICEICAFIWYSLSYIPFARRIISELTIRLC 157          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG13_ECTSI1.590e-5373.45Vesicle transport protein n=2 Tax=Ectocarpus TaxID... [more]
A0A835Z2J1_9STRA1.770e-3456.48Vesicle transport protein n=1 Tax=Tribonema minus ... [more]
A0A7S2XZK4_9STRA3.490e-2651.46Vesicle transport protein n=1 Tax=Fibrocapsa japon... [more]
A0A7S3JV88_9STRA1.180e-2240.17Vesicle transport protein n=1 Tax=Aureoumbra lagun... [more]
A0A8J2SX58_9STRA1.590e-2243.86Vesicle transport protein n=1 Tax=Pelagomonas calc... [more]
F0Y1E0_AURAN6.090e-2240.17Vesicle transport protein (Fragment) n=1 Tax=Aureo... [more]
A0A0L0D642_THETB5.240e-2044.21Vesicle transport protein n=1 Tax=Thecamonas trahe... [more]
A0A1Y1IA24_KLENI5.510e-2047.57Vesicle transport protein n=1 Tax=Klebsormidium ni... [more]
A0A7S3MGJ6_9STRA8.260e-2045.10Vesicle transport protein n=1 Tax=Spumella elongat... [more]
UPI0007EF0AFD1.620e-1839.47vesicle transport protein SFT2B n=1 Tax=Daucus car... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20787contigH-elongata_contig20787:179..565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue7.2e-41
Seed eggNOG ortholog2880.D8LG13
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsCOG5102@1,KOG2887@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionVesicle transport protein, Got1/SFT2-like
Ec32 orthologEc-21_004990.1
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.6547701-CDS-H-elongata_contig20787:178..5651622930161.6547701-CDS-H-elongata_contig20787:178..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20787 179..565 +
1691679304.8490756-CDS-H-elongata_contig20787:178..5651691679304.8490756-CDS-H-elongata_contig20787:178..565Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20787 179..565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20787.5981.1prot_H-elongata_contig20787.5981.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20787 179..565 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20787.5981.1

>prot_H-elongata_contig20787.5981.1 ID=prot_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp
CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWE
QLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQF
VAYVWYSLSYIPFARRFFGGFWAGLCAA*
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mRNA from alignment at H-elongata_contig20787:179..565+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20787.5981.1 ID=mRNA_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig20787:179..565+ (Himanthalia elongata Himel1 dioecious)
TGCCCCTTCCCCAATCTTCCTTTGCCGCTTACCTGTCTCTCCAGATTGAC GCAGCTTCTGTTGGGAAACCCACGACCCTTCGTCCTCTACTTCTCCTTCG GCAGCGCGCTCAGCGTCTGCAGCTCCTTCTTCCTCTCCGGGCCGTGGGAG CAGCTCAAGAAGATGTTCGCGCCCGTCCGAGTCGTCGCGACCAGCGTGTA CCTGATTACTCTAGGCGCGACGTTTTTCGTCGCGCTGTCGTCGCACGCGC GTGTGCCGGGGCGGGGACTCTTGCTCCTGGTCCTGGTGATCGCGCAGTTC GTCGCCTACGTTTGGTACAGCCTGTCTTACATACCGTTCGCCAGAAGGTT CTTCGGTGGCTTCTGGGCGGGGCTCTGCGCGGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig20787:179..565+

>mRNA_H-elongata_contig20787.5981.1 ID=mRNA_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig20787:179..565+ (Himanthalia elongata Himel1 dioecious)
TGCCCCTTCCCCAATCTTCCTTTGCCGCTTACCTGTCTCTCCAGATTGAC
GCAGCTTCTGTTGGGAAACCCACGACCCTTCGTCCTCTACTTCTCCTTCG
GCAGCGCGCTCAGCGTCTGCAGCTCCTTCTTCCTCTCCGGGCCGTGGGAG
CAGCTCAAGAAGATGTTCGCGCCCGTCCGAGTCGTCGCGACCAGCGTGTA
CCTGATTACTCTAGGCGCGACGTTTTTCGTCGCGCTGTCGTCGCACGCGC
GTGTGCCGGGGCGGGGACTCTTGCTCCTGGTCCTGGTGATCGCGCAGTTC
GTCGCCTACGTTTGGTACAGCCTGTCTTACATACCGTTCGCCAGAAGGTT
CTTCGGTGGCTTCTGGGCGGGGCTCTGCGCGGCATGATGCCCCTTCCCCA
ATCTTCCTTTGCCGCTTACCTGTCTCTCCAGATTGACGCAGCTTCTGTTG
GGAAACCCACGACCCTTCGTCCTCTACTTCTCCTTCGGCAGCGCGCTCAG
CGTCTGCAGCTCCTTCTTCCTCTCCGGGCCGTGGGAGCAGCTCAAGAAGA
TGTTCGCGCCCGTCCGAGTCGTCGCGACCAGCGTGTACCTGATTACTCTA
GGCGCGACGTTTTTCGTCGCGCTGTCGTCGCACGCGCGTGTGCCGGGGCG
GGGACTCTTGCTCCTGGTCCTGGTGATCGCGCAGTTCGTCGCCTACGTTT
GGTACAGCCTGTCTTACATACCGTTCGCCAGAAGGTTCTTCGGTGGCTTC
TGGGCGGGGCTCTGCGCGGCATGA
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