mRNA_H-elongata_contig20787.5981.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: D8LG13_ECTSI (Vesicle transport protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG13_ECTSI) HSP 1 Score: 175 bits (443), Expect = 1.590e-53 Identity = 83/113 (73.45%), Postives = 98/113 (86.73%), Query Frame = 1
Query: 37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGL 375
L R+ QLL GNPRPFVLYFS GSAL++CSSFFL+GPW+Q+KKMF PVR VATS+YL TL AT FVALS +A VP RG+LLL LV+AQF++YVWY+LSY+PFARRF GFW+GL
Sbjct: 64 LFRVAQLLTGNPRPFVLYFSLGSALNICSSFFLTGPWKQIKKMFNPVRAVATSIYLATLSATLFVALSPYASVPFRGILLLCLVVAQFLSYVWYTLSYVPFARRFMAGFWSGL 176
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A835Z2J1_9STRA (Vesicle transport protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2J1_9STRA) HSP 1 Score: 127 bits (319), Expect = 1.770e-34 Identity = 61/108 (56.48%), Postives = 83/108 (76.85%), Query Frame = 1
Query: 37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGG 360
L R+ +L+ GNP PFV+ +S G+ +S+C+SFFL+GPW Q+KKMF P RVVAT VY+ TLG TF VAL+ R+P R LL+ LV+ QF++++WY+LSYIPFAR + G
Sbjct: 82 LFRIVRLVAGNPLPFVINYSIGNVISICASFFLNGPWAQIKKMFEPTRVVATGVYITTLGLTFAVALAP--RMPLRAPLLVTLVVLQFMSFIWYALSYIPFAREWAAG 187
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S2XZK4_9STRA (Vesicle transport protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZK4_9STRA) HSP 1 Score: 104 bits (259), Expect = 3.490e-26 Identity = 53/103 (51.46%), Postives = 70/103 (67.96%), Query Frame = 1
Query: 43 RLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
R+ QL+ G P PFV+++S G+ +S+C S FLSGPW Q+K+MFAP R AT VYL TL T +A + VP +G +LL+L I Q +A WY LSYIP AR +
Sbjct: 21 RIMQLIRGRPIPFVVFYSLGNVVSLCGSMFLSGPWNQIKRMFAPTRAFATIVYLSTLVTTLTLAFTPG--VPFKGGILLILFIVQLLALFWYMLSYIPGARNY 121
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S3JV88_9STRA (Vesicle transport protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JV88_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 1.180e-22 Identity = 47/117 (40.17%), Postives = 77/117 (65.81%), Query Frame = 1
Query: 1 CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
C F + L + +RL +L+ GNP PFV++++ G+ +++ S FLSGP Q KKM+ P R +ATSVYL+T+ T FVA GR ++++ + Q++A +WY++S+IP+AR +
Sbjct: 45 CFFVSFCLSIGSFTRLVELVKGNPAPFVVFYTLGNVMAIIGSLFLSGPRAQCKKMWDPTRRIATSVYLLTIFFTIFVAFYEGIPDDGRIGIIIMCIFIQWIAMLWYTISFIPYARDY 161
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A8J2SX58_9STRA (Vesicle transport protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SX58_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.590e-22 Identity = 50/114 (43.86%), Postives = 71/114 (62.28%), Query Frame = 1
Query: 37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGLC 378
L RL +LL G P+ FV+YF+FG+ ++ S FFLSGP KKM P R +AT+ YLIT+ TFFV GR ++++ V Q++A +WY++S+IPFAR W +C
Sbjct: 52 LVRLKELLHGEPKNFVIYFTFGNLCAIASCFFLSGPKSHCKKMIDPTRRIATAFYLITIFFTFFVVFYEKIPDDGRVGIIILCVFIQWIAMLWYTISFIPFARD-----WVCMC 160
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: F0Y1E0_AURAN (Vesicle transport protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y1E0_AURAN) HSP 1 Score: 93.6 bits (231), Expect = 6.090e-22 Identity = 47/117 (40.17%), Postives = 73/117 (62.39%), Query Frame = 1
Query: 1 CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRF 351
C F L L ++++ +L GNP PF +Y++FG+ +++ SFFLSGP Q KM RVV+++VYL+ L AT F AL R LL ++ Q++A +WY+LS++PFA+ +
Sbjct: 13 CFFTGLVLMFLANTKISAMLAGNPTPFGVYYTFGNLVAIVGSFFLSGPTAQFNKMTEGSRVVSSAVYLLALAATLFFALDDSLPKTPRLWCLLTAILVQYLALLWYTLSFVPFAQAY 129
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A0L0D642_THETB (Vesicle transport protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D642_THETB) HSP 1 Score: 89.4 bits (220), Expect = 5.240e-20 Identity = 42/95 (44.21%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 64 GNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
G P F + +S GS ++ SS FL+GPW+Q+K M R++A+SVY++ +G T + AL P +L+L+ +I QF+A +WY LSYIP+ARR
Sbjct: 61 GKPAAFAITYSLGSLCAIGSSAFLAGPWKQIKSMMKETRIIASSVYVVAIGFTLYFALG-----PNEPVLVLMCIIIQFLAGIWYCLSYIPYARR 150
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A1Y1IA24_KLENI (Vesicle transport protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IA24_KLENI) HSP 1 Score: 89.4 bits (220), Expect = 5.510e-20 Identity = 49/103 (47.57%), Postives = 66/103 (64.08%), Query Frame = 1
Query: 40 SRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
S L+ L+ NP F + ++FG+ LS+ S+ FL GP QLK MF PVR VAT VY++ + T F AL H LL ++ ++ +F A +WYSLSYIPFARR
Sbjct: 53 SLLSSLVWLNPVKFAITYTFGNLLSLGSTTFLVGPMRQLKMMFDPVRAVATIVYVVAIVLTLFCALYLHDI-----LLTMICIVVEFCAVIWYSLSYIPFARR 150
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: A0A7S3MGJ6_9STRA (Vesicle transport protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGJ6_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 8.260e-20 Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 1
Query: 43 RLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARR 348
RL +L+ G+P PF ++ G+ + + S+ FL GP Q+K+MFAP R+VAT+VYL + T +A +P R + LL+ + QF+A VWY+LSYIPFAR
Sbjct: 68 RLIKLMEGDPEPFATMYTIGNIVGLFSTCFLYGPVSQVKQMFAPTRLVATAVYLFFMATTLLLAFYPE-YIPVRVMWLLISIFFQFLALVWYNLSYIPFARE 168
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Match: UPI0007EF0AFD (vesicle transport protein SFT2B n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007EF0AFD) HSP 1 Score: 85.5 bits (210), Expect = 1.620e-18 Identity = 45/114 (39.47%), Postives = 70/114 (61.40%), Query Frame = 1
Query: 37 LSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEQLKKMFAPVRVVATSVYLITLGATFFVALSSHARVPGRGLLLLVLVIAQFVAYVWYSLSYIPFARRFFGGFWAGLC 378
L L+ ++ NP F L F+FG+ +++ S+ FL GP +Q++ MF PVR+ AT++Y+ + AL H++V L L+++I + A++WYSLSYIPFARR LC
Sbjct: 49 LMLLSLIVFANPIKFALLFTFGNLIAIGSTAFLIGPAQQIRMMFDPVRMYATTIYIGCVVLALICALLIHSKV-----LTLIVIICEICAFIWYSLSYIPFARRIISELTIRLC 157 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20787.5981.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20787.5981.1 >prot_H-elongata_contig20787.5981.1 ID=prot_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=129bp CPFPNLPLPLTCLSRLTQLLLGNPRPFVLYFSFGSALSVCSSFFLSGPWEback to top mRNA from alignment at H-elongata_contig20787:179..565+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20787.5981.1 ID=mRNA_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=387bp|location=Sequence derived from alignment at H-elongata_contig20787:179..565+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20787:179..565+ >mRNA_H-elongata_contig20787.5981.1 ID=mRNA_H-elongata_contig20787.5981.1|Name=mRNA_H-elongata_contig20787.5981.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=774bp|location=Sequence derived from alignment at H-elongata_contig20787:179..565+ (Himanthalia elongata Himel1 dioecious)back to top |