mRNA_H-elongata_contig207855.5980.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207855.5980.1
Unique NamemRNA_H-elongata_contig207855.5980.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: D7FM70_ECTSI (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM70_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.700e-26
Identity = 48/54 (88.89%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:   64 DASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            D ++G VQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCV+GEE+PRQTFTG
Sbjct:  400 DVARGDVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVIGEEYPRQTFTG 453
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A1S8VJC6_9FUNG (Uncharacterized protein n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8VJC6_9FUNG)

HSP 1 Score: 95.5 bits (236), Expect = 1.840e-22
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 
Query:   16 GSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            G  LLSGS D++AIVWDAS G  +QQF+FH APTLDVDW+DD TFATCSTDK I+ C +G   P + F G
Sbjct:   17 GDLLLSGSVDRTAIVWDASTGEARQQFQFHSAPTLDVDWRDDSTFATCSTDKQIYICQLGSLEPLRHFAG 86
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A834ZGG0_9MAGN (LisH domain-containing protein n=1 Tax=Tetracentron sinense TaxID=13715 RepID=A0A834ZGG0_9MAGN)

HSP 1 Score: 96.3 bits (238), Expect = 1.480e-21
Identity = 45/73 (61.64%), Postives = 56/73 (76.71%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG  LLSGS DK+AIVWDA  G  +QQF FH APTLDVDW+++++FATCSTD  I+ C +GE  P +TF+G
Sbjct:  309 NKKGDCLLSGSVDKTAIVWDAKTGDWKQQFEFHSAPTLDVDWRNNVSFATCSTDNMIYVCKIGETRPIKTFSG 381
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A3Q7H1T4_SOLLC (Uncharacterized protein n=1 Tax=Solanum lycopersicum TaxID=4081 RepID=A0A3Q7H1T4_SOLLC)

HSP 1 Score: 95.1 bits (235), Expect = 1.530e-21
Identity = 44/73 (60.27%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG +LLSGS DK+AIVWD   G  +QQF FH APTLDVDW+++ +FATCSTD  I+ C VGE  P + F+G
Sbjct:  172 NKKGDYLLSGSVDKTAIVWDVKSGEWKQQFEFHSAPTLDVDWRNNNSFATCSTDNMIYVCKVGESRPLKAFSG 244
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: T1FMI0_HELRO (LisH domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FMI0_HELRO)

HSP 1 Score: 95.1 bits (235), Expect = 3.620e-21
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG+++LS   DK+ I+WDAS G   QQF FH AP LDVDWKD++TFA+CSTD+ IH C +G + P +TF G
Sbjct:  284 NKKGNYILSAGVDKTTIIWDASSGRCTQQFGFHNAPALDVDWKDNMTFASCSTDQCIHVCKLGTDKPIKTFQG 356
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: UPI0013F34F25 (F-box-like/WD repeat-containing protein TBL1X n=1 Tax=Rattus rattus TaxID=10117 RepID=UPI0013F34F25)

HSP 1 Score: 87.4 bits (215), Expect = 1.090e-20
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG+++LS   DK+ I+WDA  G  +QQF FH AP LDVDW+++ TFA+CSTD  IH C +G + P +TF G
Sbjct:   26 NKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQG 98
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A8C1HDT8_CYPCA (Transducin (beta)-like 1 X-linked receptor 1b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1HDT8_CYPCA)

HSP 1 Score: 91.3 bits (225), Expect = 1.120e-20
Identity = 41/73 (56.16%), Postives = 52/73 (71.23%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG+F+LS   DK+ I+WDA  G  +QQF FH AP LDVDW+ + TFA+CSTD  IH C +G+E P +TF G
Sbjct:  131 NKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQERPVKTFQG 203
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: E4Y268_OIKDI (LisH domain-containing protein (Fragment) n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y268_OIKDI)

HSP 1 Score: 93.2 bits (230), Expect = 1.240e-20
Identity = 41/73 (56.16%), Postives = 51/73 (69.86%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N  G ++LS   D++ I+WDA+   ++QQF FHEAP LDVDWKDD  FA+CSTDK IH C +G   P  TFTG
Sbjct:  280 NKNGKYILSAGVDRTTIIWDAANAEIKQQFPFHEAPALDVDWKDDTIFASCSTDKKIHVCQMGRSTPVITFTG 352
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A813YLC6_ADIRI (Hypothetical protein n=4 Tax=Adineta ricciae TaxID=249248 RepID=A0A813YLC6_ADIRI)

HSP 1 Score: 93.6 bits (231), Expect = 1.400e-20
Identity = 40/73 (54.79%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG+++LS   D++ I+WDA+ G  +QQF FH AP LDVDW+ D+TFA+CSTD+ IH C +GE+ P +TF G
Sbjct:  420 NKKGNYILSAGVDRTTIIWDANSGHCEQQFAFHTAPALDVDWQSDITFASCSTDQKIHVCRLGEQRPLKTFHG 492
[Close]
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Match: A0A815UEJ3_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A815UEJ3_9BILA)

HSP 1 Score: 91.3 bits (225), Expect = 1.470e-20
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:    7 NLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTFATCSTDKAIHTCVVGEEFPRQTFTG 225
            N KG+F+LS   D++ I+WDA+ G  +QQF FH AP LDVDW+ D TFA+CSTD+ IH C +GE  P +TF G
Sbjct:   45 NKKGNFILSAGVDRTTIIWDANSGHCEQQFSFHTAPALDVDWQSDTTFASCSTDQKIHVCRLGELRPIKTFHG 117
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207855.5980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM70_ECTSI3.700e-2688.89LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A1S8VJC6_9FUNG1.840e-2264.29Uncharacterized protein n=1 Tax=Batrachochytrium s... [more]
A0A834ZGG0_9MAGN1.480e-2161.64LisH domain-containing protein n=1 Tax=Tetracentro... [more]
A0A3Q7H1T4_SOLLC1.530e-2160.27Uncharacterized protein n=1 Tax=Solanum lycopersic... [more]
T1FMI0_HELRO3.620e-2157.53LisH domain-containing protein n=1 Tax=Helobdella ... [more]
UPI0013F34F251.090e-2053.42F-box-like/WD repeat-containing protein TBL1X n=1 ... [more]
A0A8C1HDT8_CYPCA1.120e-2056.16Transducin (beta)-like 1 X-linked receptor 1b n=1 ... [more]
E4Y268_OIKDI1.240e-2056.16LisH domain-containing protein (Fragment) n=1 Tax=... [more]
A0A813YLC6_ADIRI1.400e-2054.79Hypothetical protein n=4 Tax=Adineta ricciae TaxID... [more]
A0A815UEJ3_9BILA1.470e-2056.16Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207855contigH-elongata_contig207855:66..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue5.7e-22
Seed eggNOG ortholog2880.D7FM70
Preferred nameTBL1XR1
KEGG koko:K04508
KEGG Pathwayko04013,ko04310,map04013,map04310
GOsGO:0000118,GO:0000122,GO:0000151,GO:0001067,GO:0001654,GO:0001745,GO:0001932,GO:0001933,GO:0002009,GO:0002021,GO:0002165,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003714,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005694,GO:0005700,GO:0005819,GO:0005856,GO:0005874,GO:0005876,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006476,GO:0006508,GO:0006511,GO:0006629,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007173,GO:0007219,GO:0007275,GO:0007399,GO:0007423,GO:0007444,GO:0007472,GO:0007476,GO:0007552,GO:0007560,GO:0007600,GO:0007605,GO:0008013,GO:0008022,GO:0008134,GO:0008150,GO:0008152,GO:0008587,GO:0008593,GO:0009056,GO:0009057,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0009991,GO:0010033,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010558,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010941,GO:0014070,GO:0015630,GO:0016042,GO:0016043,GO:0016569,GO:0016570,GO:0016575,GO:0017053,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019725,GO:0019904,GO:0019941,GO:0022008,GO:0022416,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030177,GO:0030182,GO:0031056,GO:0031058,GO:0031063,GO:0031065,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031400,GO:0031401,GO:0031461,GO:0031647,GO:0031667,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032872,GO:0032873,GO:0032991,GO:0033043,GO:0033044,GO:0033993,GO:0035107,GO:0035114,GO:0035120,GO:0035220,GO:0035239,GO:0035264,GO:0035295,GO:0035601,GO:0036211,GO:0038127,GO:0040007,GO:0040008,GO:0042058,GO:0042221,GO:0042325,GO:0042326,GO:0042393,GO:0042461,GO:0042592,GO:0042675,GO:0042676,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043409,GO:0043412,GO:0043523,GO:0043524,GO:0043627,GO:0043632,GO:0044212,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0045165,GO:0045444,GO:0045570,GO:0045572,GO:0045747,GO:0045892,GO:0045893,GO:0045927,GO:0045934,GO:0045935,GO:0045936,GO:0045944,GO:0046328,GO:0046329,GO:0046530,GO:0046620,GO:0046622,GO:0047485,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048563,GO:0048569,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0048592,GO:0048638,GO:0048639,GO:0048666,GO:0048699,GO:0048707,GO:0048729,GO:0048731,GO:0048736,GO:0048737,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050821,GO:0050872,GO:0050877,GO:0050896,GO:0050954,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051603,GO:0051716,GO:0060249,GO:0060255,GO:0060429,GO:0060548,GO:0060562,GO:0060612,GO:0060613,GO:0060828,GO:0061448,GO:0065007,GO:0065008,GO:0070013,GO:0070050,GO:0070302,GO:0070303,GO:0070491,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0080008,GO:0080090,GO:0080134,GO:0080135,GO:0090207,GO:0090263,GO:0090311,GO:0090312,GO:0090596,GO:0097159,GO:0098732,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0104004,GO:0140110,GO:1901184,GO:1901214,GO:1901215,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902275,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001252
EggNOG free text desc.transcription corepressor activity
EggNOG OGsCOG2319@1,KOG0273@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.600003-CDS-H-elongata_contig207855:65..1701622930161.600003-CDS-H-elongata_contig207855:65..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207855 66..170 -
1691679304.830371-CDS-H-elongata_contig207855:65..1701691679304.830371-CDS-H-elongata_contig207855:65..170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207855 66..170 -
1622930161.6153183-CDS-H-elongata_contig207855:671..7911622930161.6153183-CDS-H-elongata_contig207855:671..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207855 672..791 -
1691679304.840871-CDS-H-elongata_contig207855:671..7911691679304.840871-CDS-H-elongata_contig207855:671..791Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207855 672..791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207855.5980.1prot_H-elongata_contig207855.5980.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207855 66..791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207855.5980.1

>prot_H-elongata_contig207855.5980.1 ID=prot_H-elongata_contig207855.5980.1|Name=mRNA_H-elongata_contig207855.5980.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MSNLKGSFLLSGSSDKSAIVWDASKGVVQQQFRFHEAPTLDVDWKDDLTF
ATCSTDKAIHTCVVGEEFPRQTFTG
back to top

mRNA from alignment at H-elongata_contig207855:66..791-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207855.5980.1 ID=mRNA_H-elongata_contig207855.5980.1|Name=mRNA_H-elongata_contig207855.5980.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at H-elongata_contig207855:66..791- (Himanthalia elongata Himel1 dioecious)
ATGTCTAATTTGAAGGGAAGCTTCTTGTTGAGCGGCAGTTCGGATAAGTC
AGCGATCGTGTGGGACGCGTCAAAGGGGGTTGTGCAGCAGCAGTTCCGCT
TCCACGAGGCACCCACTTTGGTGAGTGACTTTTGTCCTTGAGCAGTTGGC
CCTATCAATCTAACAACGTTTTTGAACTTAATTGAGGGACGAAACCGGCA
TGTATCATCTAAGGCTATTAATAGGGTCAAAGAAAAGCTTACGACAAGGC
TACCCGTTCCACGCTCCTTTGTTTTTTATAGCGCGTGATAGATAACATTC
ATTCATTTAGGTCATTCATTTAGGTCATTCATTCAGGTCATTCATTCATT
TAGCCGAACAGCTTAGTAATCAGGGAAAGCTTAAACTCGGTAGATAATTG
TCCAAAATATCTTTTCAAAAAGACGTCTTGTTTTGGTCGGCAGTACCGTT
GAATCCACGTCGCTCATTCTTATGAAAAGACTTATGAAAATACTAAAAGT
CATGATAGCTACATGACTCAGTTGACGGTGACGACGGTGACTTTGCGATG
CCGACTACGGTGACTTACCGATATCTGATACACCATCTGATATCATATGG
TATCATATTCTGTGATATTAGGATGTGGACTGGAAGGACGACCTGACGTT
CGCCACGTGCTCGACGGACAAGGCCATACACACCTGCGTAGTTGGAGAGG
AATTCCCGCGGCAAACGTTTACCGGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig207855:66..791-

>mRNA_H-elongata_contig207855.5980.1 ID=mRNA_H-elongata_contig207855.5980.1|Name=mRNA_H-elongata_contig207855.5980.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig207855:66..791- (Himanthalia elongata Himel1 dioecious)
ATGTCTAATTTGAAGGGAAGCTTCTTGTTGAGCGGCAGTTCGGATAAGTC
AGCGATCGTGTGGGACGCGTCAAAGGGGGTTGTGCAGCAGCAGTTCCGCT
TCCACGAGGCACCCACTTTGATGTCTAATTTGAAGGGAAGCTTCTTGTTG
AGCGGCAGTTCGGATAAGTCAGCGATCGTGTGGGACGCGTCAAAGGGGGT
TGTGCAGCAGCAGTTCCGCTTCCACGAGGCACCCACTTTGGATGTGGACT
GGAAGGACGACCTGACGTTCGCCACGTGCTCGACGGACAAGGCCATACAC
ACCTGCGTAGTTGGAGAGGAATTCCCGCGGCAAACGTTTACCGGTGATGT
GGACTGGAAGGACGACCTGACGTTCGCCACGTGCTCGACGGACAAGGCCA
TACACACCTGCGTAGTTGGAGAGGAATTCCCGCGGCAAACGTTTACCGGT
back to top