mRNA_H-elongata_contig20784.5977.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 249 bits (636), Expect = 3.090e-74 Identity = 130/375 (34.67%), Postives = 200/375 (53.33%), Query Frame = 3
Query: 147 LMVGTTGGG---SLEVGRAWRNLSMAHDCPRCDTLFTALEDTADGKRVQKIQVQERGEPKSGTTFMFQWARDVLHRTCEYLKNVYGKETCRLQDEGPLGYYKAP-----------NEVIFTFEPH-------LAGDDAM-CTCDGLDQVRISVNQTHKHMLPVNHGCRWNHNSNIEVKGHGCTRINKRPVQDFMDLWLCMEESNCAITDNRLQFVLMRDPRAVAVSLYYHMQVHPSKIYGSNPPSTKPLNEGVLALLPEVCQWLAIRHILFEGLMADVSTVFWYQDSQDNPLAWHYRWAASVGLQLPPSLIESMANDAITRNFSFEIAGYNEHPGKKQPMEERSWQSEISAEVQREMNAILNTWLPPVVLARLGV 1205
L + GG SLE G A +CP C+T+F L Q +++Q RGEPKSGT+FMF+WA + L TCE L +YG+ TC + G K EV F F+P+ G A C C +D+V I V+ KH LPV C W H N+ + GCT +N R V ++ D C+++ C I D+R+Q +++RDPRAVAVS ++H++ H + + + ++ VL +LP +C ++ +R+++ + + F Y +S +PL WH RW +SVGL PP ++ N ++ R + F G ++HPG K+ E+R+W+ EIS +V ++ I WLPPV+L + G+
Sbjct: 55 LSISKGSGGAWSSLETGSTGLRKLQADECPPCETMFGKLNGAQ-----QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHL--TDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.200e-59 Identity = 102/232 (43.97%), Postives = 145/232 (62.50%), Query Frame = 3
Query: 516 LDQVRISVNQTHKHMLPVNHGCRWNHNSNIEVKGHGCTRINKRPVQDFMDLWLCMEESNCAITDNRLQFVLMRDPRAVAVSLYYHMQVHPSKIYGSNPPSTKPLNEGVLALLPEVCQWLAIRHILFEGLMADVSTVFWYQDSQDNPLAWHYRWAASVGLQLPPSLIESMANDAITRNFSFEIAGYNEHPGKKQPMEERSWQSEISAEVQREMNAILNTWLPPVVLARLGVAP 1211
L +V IS++ KH LPVN C W+H S +G GC + PV+ DLW CM+++ C ITDNRLQFV +RDPRAVAVS Y+H +VH Y PS L++ VL +LP +C + +RHILF GL+++ + +FWY+ + ++P WHYRWA+ GL LP I+ M + N + + N HPG + + R+WQ E+S ++ EM++IL WLP V+LAR G+ P
Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKDNNYQKLHPS---LDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGM----VAENQAHKHL--NPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIPP 223
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 158 bits (399), Expect = 2.810e-42 Identity = 75/169 (44.38%), Postives = 114/169 (67.46%), Query Frame = 3
Query: 699 ITDNRLQFVLMRDPRAVAVSLYYHMQVHPSKIYGSNPPSTKPLNEGVLALLPEVCQWLAIRHILFEGLMADVSTVFWYQDSQDNPLAWHYRWAASVGLQLPPSLIESMANDAITRNFSFEIAGYNEHPGKKQPMEERSWQSEISAEVQREMNAILNTWLPPVVLARLGV 1205
+ D+ LQF ++RDPRAVAVS Y++++ HP+ Y + K L+E VL +LP++CQ+ IRH+LF+G ++D S +FWY+D+ +PL WHYRWA+ G LP S I+ + DA ++ + HPG +Q +R+W+ EIS ++ EM++IL TWLP V+L RLG+
Sbjct: 25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPA-FYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDI--DATLPEAQQKVKR-DPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGI 189
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 136 bits (342), Expect = 2.040e-34 Identity = 69/164 (42.07%), Postives = 102/164 (62.20%), Query Frame = 3
Query: 729 MRDPRAVAVSLYYHMQVHPSKIYGSNPPSTKPLNEGVLALLPEVCQWLAIRHILFEGLMADVSTVFWYQDSQDNPLAWHYRWAASVGLQLPPSLIESMANDAITRNFSFEIAGYNE-----HPGKKQPMEERSWQSEISAEVQREMNAILNTWLPPVVLARLGV 1205
MRDPRAVAVS Y++++ P ++ +P K L+E V+ +LP++CQ+ IRHILF+G ++D S +FWY+D+ +PL W+ RWA+ G LP I+ + S A N+ HPG + +R+W+ E+S E + EMN+IL TWLP V+LAR V
Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHLH--HPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDI-------QASLTEAAENDRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDV 155
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI) HSP 1 Score: 100 bits (249), Expect = 5.200e-22 Identity = 46/108 (42.59%), Postives = 70/108 (64.81%), Query Frame = 3
Query: 888 LFEGLMADVSTVFWYQDSQDNPLAWHYRWAASVGLQLPPSLIESMANDAITRNFSFEIAGYNEHPGKKQPMEERSWQSEISAEVQREMNAILNTWLPPVVLARLGVAP 1211
+FEGL++D S +FWY+++ ++P AWHYRWA+ GL LP + I+ M A+ + F +N HPG + +R+W+ E+S + +M +IL WLPPV+LAR V P
Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMV--AVNQERLF----FNRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVPP 102 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20784.5977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20784.5977.1 >prot_H-elongata_contig20784.5977.1 ID=prot_H-elongata_contig20784.5977.1|Name=mRNA_H-elongata_contig20784.5977.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=387bp MRLGCSTRSMLSTRNVVDWNMAFCPLMVVVLMVGTTGGGSLEVGRAWRNLback to top mRNA from alignment at H-elongata_contig20784:4310..6691+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20784.5977.1 ID=mRNA_H-elongata_contig20784.5977.1|Name=mRNA_H-elongata_contig20784.5977.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2382bp|location=Sequence derived from alignment at H-elongata_contig20784:4310..6691+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20784:4310..6691+ >mRNA_H-elongata_contig20784.5977.1 ID=mRNA_H-elongata_contig20784.5977.1|Name=mRNA_H-elongata_contig20784.5977.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2322bp|location=Sequence derived from alignment at H-elongata_contig20784:4310..6691+ (Himanthalia elongata Himel1 dioecious)back to top |