mRNA_H-elongata_contig207824.5976.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207824.5976.1
Unique NamemRNA_H-elongata_contig207824.5976.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: D8LT25_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT25_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.210e-27
Identity = 49/53 (92.45%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWKGEAFRLWVDLWASLYDDES+SAELL+ IHDSYYLVAVVDNNFIDGNLWE+
Sbjct:  259 VWKGEAFRLWVDLWASLYDDESKSAELLHDIHDSYYLVAVVDNNFIDGNLWEI 311
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A6H5KKX8_9PHAE (Methylenetetrahydrofolate reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKX8_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.990e-26
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWKGEAFRLWVDLWASLYD+ES+SAELL+ IHDSYYLVAVVDNNFIDGNLWE+
Sbjct:  544 VWKGEAFRLWVDLWASLYDEESKSAELLHDIHDSYYLVAVVDNNFIDGNLWEI 596
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A662WVI0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVI0_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.130e-19
Identity = 33/53 (62.26%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWK EAF LW+ LWASLY++ S+SA+LL  IHDSY+LV++VDN+F++GN+W++
Sbjct:    8 VWKDEAFALWLKLWASLYEEASQSAQLLREIHDSYFLVSIVDNDFVNGNIWDL 60
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A8K1CJB9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CJB9_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 5.680e-18
Identity = 33/53 (62.26%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
             WK EAF LW+ LWASLYDD+S ++ELL+ IHDSY+LV++VDN+F++GN+W++
Sbjct:  527 AWKDEAFSLWLKLWASLYDDDSTASELLHEIHDSYFLVSIVDNDFVNGNIWDI 579
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A2D4BX93_PYTIN (Methylenetetrahydrofolate reductase (NAD(P)H) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX93_PYTIN)

HSP 1 Score: 82.8 bits (203), Expect = 3.710e-17
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
             WK EAF LW+  WAS+YDD+SR+AE+++ IHD+Y+LV++VDN+FI GN+WE+
Sbjct:  503 AWKDEAFSLWLKEWASIYDDDSRAAEIIHEIHDTYFLVSIVDNDFIRGNIWEI 555
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: H3GAC2_PHYRM (Methylenetetrahydrofolate reductase n=22 Tax=Peronosporaceae TaxID=4777 RepID=H3GAC2_PHYRM)

HSP 1 Score: 81.3 bits (199), Expect = 1.290e-16
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWK EAF LW+ LWASLY D S+SA+LL+ +HD+Y+LV++VDN+F++GN+W++
Sbjct:  528 VWKDEAFALWLKLWASLYADGSQSAKLLHEVHDTYFLVSIVDNDFVNGNIWDL 580
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A662WW66_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WW66_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.450e-16
Identity = 32/53 (60.38%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWK EAF LW+ LWASLY++ S+SA LL  IHDSY+LV++VDN+F++G++W++
Sbjct:  232 VWKDEAFALWLKLWASLYEEASQSARLLREIHDSYFLVSIVDNDFVNGSIWDL 284
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: K3WKM9_GLOUD (Methylenetetrahydrofolate reductase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKM9_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 4.480e-16
Identity = 30/53 (56.60%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
             WK EAF LW+ LWASLYDDES ++E+++ IHD+++LV++VDN+FI+G++W +
Sbjct:  527 AWKDEAFALWLSLWASLYDDESAASEVIHEIHDTFFLVSIVDNDFINGDIWSI 579
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BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A421G1F7_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G1F7_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.490e-16
Identity = 32/53 (60.38%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
            VWK EAF LW+ LWASLY++ S+SA+LL  IHD+Y+LV++VDN+F++GN+W++
Sbjct:  542 VWKDEAFALWLKLWASLYENGSQSAKLLRKIHDTYFLVSIVDNDFVNGNIWDL 594
[Close]
BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Match: A0A1W0A9I6_9STRA (Methylenetetrahydrofolate reductase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9I6_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.140e-15
Identity = 31/53 (58.49%), Postives = 43/53 (81.13%), Query Frame = 1 
Query:    1 VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNLWEV 159
             WK EAF LW+ +WASLYD  S+S  L+  IHD+++LV++VDNNF++GN+WEV
Sbjct:  526 AWKDEAFSLWMSMWASLYDQASQSFSLIKEIHDTFFLVSIVDNNFVNGNIWEV 578
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207824.5976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LT25_ECTSI1.210e-2792.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KKX8_9PHAE3.990e-2690.57Methylenetetrahydrofolate reductase n=1 Tax=Ectoca... [more]
A0A662WVI0_9STRA2.130e-1962.26Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A8K1CJB9_PYTOL5.680e-1862.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BX93_PYTIN3.710e-1760.38Methylenetetrahydrofolate reductase (NAD(P)H) n=1 ... [more]
H3GAC2_PHYRM1.290e-1660.38Methylenetetrahydrofolate reductase n=22 Tax=Peron... [more]
A0A662WW66_9STRA2.450e-1660.38Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
K3WKM9_GLOUD4.480e-1656.60Methylenetetrahydrofolate reductase n=1 Tax=Globis... [more]
A0A421G1F7_9STRA4.490e-1660.38Methylenetetrahydrofolate reductase n=1 Tax=Phytop... [more]
A0A1W0A9I6_9STRA1.140e-1558.49Methylenetetrahydrofolate reductase n=1 Tax=Thraus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207824contigH-elongata_contig207824:675..839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue3.2e-22
Seed eggNOG ortholog2880.D8LT25
Preferred nameMTHFR1
KEGG rclassRC00081
KEGG koko:K00297,ko:K10901
KEGG ReactionR01224,R07168
KEGG Pathwayko00670,ko00720,ko01100,ko01120,ko01200,ko01523,ko03440,ko03460,map00670,map00720,map01100,map01120,map01200,map01523,map03440,map03460
KEGG ModuleM00295,M00377,M00414
GOsGO:0003674,GO:0003824,GO:0004489,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006730,GO:0008150,GO:0008152,GO:0009987,GO:0016491,GO:0016645,GO:0016646,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0055114
EggNOG free text desc.methylenetetrahydrofolate reductase (NAD(P)H) activity
EggNOG OGsCOG0685@1,KOG0564@2759
EC1.5.1.20,3.6.4.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.2197294-CDS-H-elongata_contig207824:674..8391622930161.2197294-CDS-H-elongata_contig207824:674..839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207824 675..839 +
1691679304.6598632-CDS-H-elongata_contig207824:674..8391691679304.6598632-CDS-H-elongata_contig207824:674..839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207824 675..839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207824.5976.1prot_H-elongata_contig207824.5976.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207824 675..839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207824.5976.1

>prot_H-elongata_contig207824.5976.1 ID=prot_H-elongata_contig207824.5976.1|Name=mRNA_H-elongata_contig207824.5976.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
VWKGEAFRLWVDLWASLYDDESRSAELLYGIHDSYYLVAVVDNNFIDGNL
WEVG*
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mRNA from alignment at H-elongata_contig207824:675..839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207824.5976.1 ID=mRNA_H-elongata_contig207824.5976.1|Name=mRNA_H-elongata_contig207824.5976.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig207824:675..839+ (Himanthalia elongata Himel1 dioecious)
GTGTGGAAAGGCGAGGCGTTCCGGCTGTGGGTGGATCTGTGGGCCTCCCT
GTACGACGACGAGTCCCGAAGCGCCGAGCTGCTGTACGGTATCCACGACT
CGTACTATCTCGTGGCAGTGGTGGACAATAATTTTATCGACGGCAATCTA
TGGGAGGTGGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig207824:675..839+

>mRNA_H-elongata_contig207824.5976.1 ID=mRNA_H-elongata_contig207824.5976.1|Name=mRNA_H-elongata_contig207824.5976.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig207824:675..839+ (Himanthalia elongata Himel1 dioecious)
GTGTGGAAAGGCGAGGCGTTCCGGCTGTGGGTGGATCTGTGGGCCTCCCT
GTACGACGACGAGTCCCGAAGCGCCGAGCTGCTGTACGGTATCCACGACT
CGTACTATCTCGTGGCAGTGGTGGACAATAATTTTATCGACGGCAATCTA
TGGGAGGTGGGGTAAGTGTGGAAAGGCGAGGCGTTCCGGCTGTGGGTGGA
TCTGTGGGCCTCCCTGTACGACGACGAGTCCCGAAGCGCCGAGCTGCTGT
ACGGTATCCACGACTCGTACTATCTCGTGGCAGTGGTGGACAATAATTTT
ATCGACGGCAATCTATGGGAGGTGGGGTAA
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