mRNA_H-elongata_contig20771.5974.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20771.5974.1
Unique NamemRNA_H-elongata_contig20771.5974.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20771.5974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20771contigH-elongata_contig20771:2954..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_004530.1
Exons2
Model size383
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20771.5974.1prot_H-elongata_contig20771.5974.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20771 2998..4075 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.0165222-UTR-H-elongata_contig20771:2953..29971622930161.0165222-UTR-H-elongata_contig20771:2953..2997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 2954..2997 -
1691679304.5967157-UTR-H-elongata_contig20771:2953..29971691679304.5967157-UTR-H-elongata_contig20771:2953..2997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 2954..2997 -
1622930161.0692582-UTR-H-elongata_contig20771:4075..40781622930161.0692582-UTR-H-elongata_contig20771:4075..4078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 4076..4078 -
1691679304.6224911-UTR-H-elongata_contig20771:4075..40781691679304.6224911-UTR-H-elongata_contig20771:4075..4078Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20771 4076..4078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930161.0339527-CDS-H-elongata_contig20771:2997..31111622930161.0339527-CDS-H-elongata_contig20771:2997..3111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 2998..3111 -
1691679304.6065314-CDS-H-elongata_contig20771:2997..31111691679304.6065314-CDS-H-elongata_contig20771:2997..3111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 2998..3111 -
1622930161.0503798-CDS-H-elongata_contig20771:3853..40751622930161.0503798-CDS-H-elongata_contig20771:3853..4075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 3854..4075 -
1691679304.6143577-CDS-H-elongata_contig20771:3853..40751691679304.6143577-CDS-H-elongata_contig20771:3853..4075Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20771 3854..4075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20771.5974.1

>prot_H-elongata_contig20771.5974.1 ID=prot_H-elongata_contig20771.5974.1|Name=mRNA_H-elongata_contig20771.5974.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
MNRWDGMDISSALIQAPAAKRPRCHGSSGGEEGDRLTGREDPRQLVFVDQ
GHRQEEQEQQQQLQRAFHQLGVRQRNTRPQSPPLASGVPPKRPRTRSEEP
PSAPCKRTRHG*
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mRNA from alignment at H-elongata_contig20771:2954..4078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20771.5974.1 ID=mRNA_H-elongata_contig20771.5974.1|Name=mRNA_H-elongata_contig20771.5974.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1125bp|location=Sequence derived from alignment at H-elongata_contig20771:2954..4078- (Himanthalia elongata Himel1 dioecious)
AGGATGAATCGATGGGACGGGATGGATATTTCGAGCGCTCTGATCCAGGC
GCCAGCTGCGAAGCGACCGCGATGTCACGGTTCTAGTGGGGGGGAGGAGG
GCGATAGGCTTACGGGACGGGAAGACCCGCGCCAGCTGGTGTTTGTAGAC
CAAGGTCATCGGCAAGAGGAGCAGGAGCAGCAGCAACAGCTGCAACGTGC
GTTCCATCAGCTGGGGGTTAGACAAGTGAGCTCACGTTTCTGCCTATAGA
CCCATGCAAACGTTCTCGGTTTAGCAACCTCACCGACCGCAAGTCTGCCC
ATATTCCGCCAGTGATACGAAAGAGTACACACGGGGGAATATACCAACCT
CTCCCCCGCTTGCGCCTCCGCTTTTTCATTATGATGCAAATTCAGCACTC
CTAGACCTAGACCACCATCAGTTGAAATTTTCTTCCTCAACTTCTCGAGC
TTTTCGCTCCGAGATGAACTTTTCCCCCGAGATTCGAACTCAGGAGCAGT
CTACGGTCGTGCAGGCTATTAGAGCAGTTGAAGCGTCGTGGTGAACTGCA
TATGGGGGGATCGTGATTGACGGCCGTAATGTCGCGGGCGGGATGCGAAG
CGATTGGGGGTTCTTGTTTTCCATTTTTGGCCGTCTTTCCTGTCCTAGGA
AGGGAATAATGCAGAGCCAGAAAAAAAGGGTGGAAGAATTTGTTGCGTTT
TTGGACAAAGGAGGTACAAGCTTCTTTCTCATTTCGACGACCCTCTCTCA
TGAAGCCCCGCGTGCCCCCCCCCCCCCAACGCGTATATTATTCGTTGAAA
GAAACACATTCCACGAAAGTATGCTTGTCCGTAGATCGCGCGCAACCGCT
TTGTCTTTTTAGTTTTGATCTCATCAGCGGCTCCCAATCACGATCACAAT
CGCAACATGGTAGCGGTCTTACACGCTCTCCCCGGGGGCTTCTCCCGCGC
CTCGTCCTTCTTTGCAGAGAAACACGCGACCGCAGAGCCCCCCGCTGGCG
TCGGGTGTCCCGCCTAAACGCCCAAGAACCCGCAGCGAAGAACCACCCTC
CGCCCCCTGCAAACGCACGAGGCACGGCTGAGCGATTCTGCTTTTACTGC
AGGTGAAGAAGCGAGTTTCGGCAAC
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Coding sequence (CDS) from alignment at H-elongata_contig20771:2954..4078-

>mRNA_H-elongata_contig20771.5974.1 ID=mRNA_H-elongata_contig20771.5974.1|Name=mRNA_H-elongata_contig20771.5974.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig20771:2954..4078- (Himanthalia elongata Himel1 dioecious)
ATGAATCGATGGGACGGGATGGATATTTCGAGCGCTCTGATCCAGGCGCC
AGCTGCGAAGCGACCGCGATGTCACGGTTCTAGTGGGGGGGAGGAGGGCG
ATAGGCTTACGGGACGGGAAGACCCGCGCCAGCTGGTGTTTGTAGACCAA
GGTCATCGGCAAGAGGAGCAGGAGCAGCAGCAACAGCTGCAACGTGCGTT
CCATCAGCTGGGGGTTAGACAAATGAATCGATGGGACGGGATGGATATTT
CGAGCGCTCTGATCCAGGCGCCAGCTGCGAAGCGACCGCGATGTCACGGT
TCTAGTGGGGGGGAGGAGGGCGATAGGCTTACGGGACGGGAAGACCCGCG
CCAGCTGGTGTTTGTAGACCAAGGTCATCGGCAAGAGGAGCAGGAGCAGC
AGCAACAGCTGCAACGTGCGTTCCATCAGCTGGGGGTTAGACAAAGAAAC
ACGCGACCGCAGAGCCCCCCGCTGGCGTCGGGTGTCCCGCCTAAACGCCC
AAGAACCCGCAGCGAAGAACCACCCTCCGCCCCCTGCAAACGCACGAGGC
ACGGCTGAAGAAACACGCGACCGCAGAGCCCCCCGCTGGCGTCGGGTGTC
CCGCCTAAACGCCCAAGAACCCGCAGCGAAGAACCACCCTCCGCCCCCTG
CAAACGCACGAGGCACGGCTGA
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