mRNA_H-elongata_contig207687.5972.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207687.5972.1
Unique NamemRNA_H-elongata_contig207687.5972.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A6A4H936_9AGAR (DWNN-domain-containing protein n=1 Tax=Gymnopus androsaceus JB14 TaxID=1447944 RepID=A0A6A4H936_9AGAR)

HSP 1 Score: 52.8 bits (125), Expect = 2.440e-6
Identity = 26/44 (59.09%), Postives = 28/44 (63.64%), Query Frame = 1 
Query:    1 RGPGGPMPHPGIDRGMGPGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            RGP  P   PG      P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  181 RGPPRPGAKPGPSPYQPPDRPLPASYVCYRCGQKGHWIKDCPTN 224
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: UPI001E8D5733 (DWNN domain-containing protein n=1 Tax=Lentinula edodes TaxID=5353 RepID=UPI001E8D5733)

HSP 1 Score: 50.4 bits (119), Expect = 1.600e-5
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   28 PGIDRGMGPGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            PG      P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  190 PGPSTYQPPDRPLPASYVCYRCGQKGHWIKDCPTN 224
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A1Q3DZT5_LENED (Zinc knuckle domain-containing protein n=1 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3DZT5_LENED)

HSP 1 Score: 50.4 bits (119), Expect = 1.620e-5
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 1 
Query:   28 PGIDRGMGPGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            PG      P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  190 PGPSTYQPPDRPLPASYVCYRCGQKGHWIKDCPTN 224
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A1A6HDA4_NEOLE (Uncharacterized protein n=1 Tax=Neotoma lepida TaxID=56216 RepID=A0A1A6HDA4_NEOLE)

HSP 1 Score: 50.1 bits (118), Expect = 2.150e-5
Identity = 19/27 (70.37%), Postives = 21/27 (77.78%), Query Frame = 1 
Query:   61 PLPSTYVCRRCFQPGHHIKDCPTNGKD 141
            PLP +Y C RC  PGHHIKDCPTNG +
Sbjct:  153 PLPPSYTCFRCGIPGHHIKDCPTNGDE 179
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A4S8LGN4_DENBC (DWNN-domain-containing protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4S8LGN4_DENBC)

HSP 1 Score: 49.7 bits (117), Expect = 2.990e-5
Identity = 27/57 (47.37%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:   52 PGRPLPSTYVCRRCFQPGHHIKDCPTNG-----KDPRVP-------GCLKDVKGARG 186
            P RPLP++YVC RC Q GH IKDCPTN        PR+          LK V+G +G
Sbjct:  199 PERPLPASYVCYRCGQKGHWIKDCPTNSDREFDNKPRLKRTTGIPRSMLKAVEGPQG 255
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A0D0CZ56_9AGAR (Uncharacterized protein n=1 Tax=Gymnopus luxurians FD-317 M1 TaxID=944289 RepID=A0A0D0CZ56_9AGAR)

HSP 1 Score: 49.7 bits (117), Expect = 2.990e-5
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   52 PGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  201 PDRPLPTSYVCYRCGQKGHWIKDCPTN 227
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A498NSR2_LABRO (E3 ubiquitin-ligase RBBP6-like isoform X2 n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498NSR2_LABRO)

HSP 1 Score: 49.3 bits (116), Expect = 4.010e-5
Identity = 23/43 (53.49%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   64 LPSTYVCRRCFQPGHHIKDCPTNGKDPRVPGCLKDVKGARGTP 192
            LP  Y+C RC  PGHHIK+CPTNG D R   C K ++   G P
Sbjct:  154 LPPNYICFRCGIPGHHIKNCPTNG-DRRFASC-KRIRKCAGIP 194
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: D8Q1G9_SCHCM (Uncharacterized protein (Fragment) n=1 Tax=Schizophyllum commune (strain H4-8 / FGSC 9210) TaxID=578458 RepID=D8Q1G9_SCHCM)

HSP 1 Score: 49.3 bits (116), Expect = 4.010e-5
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   52 PGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  200 PERPLPASYVCYRCGQKGHWIKDCPTN 226
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BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: A0A550CLF6_9AGAR (DWNN domain-containing protein n=1 Tax=Auriculariopsis ampla TaxID=97359 RepID=A0A550CLF6_9AGAR)

HSP 1 Score: 49.3 bits (116), Expect = 4.040e-5
Identity = 20/27 (74.07%), Postives = 22/27 (81.48%), Query Frame = 1 
Query:   52 PGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            P RPLP++YVC RC Q GH IKDCPTN
Sbjct:  202 PERPLPASYVCYRCGQKGHWIKDCPTN 228
[Close]
BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Match: UPI001C79F921 (DWNN-domain-containing protein n=1 Tax=Guyanagaster necrorhizus MCA 3950 TaxID=1450536 RepID=UPI001C79F921)

HSP 1 Score: 48.9 bits (115), Expect = 5.590e-5
Identity = 20/27 (74.07%), Postives = 21/27 (77.78%), Query Frame = 1 
Query:   52 PGRPLPSTYVCRRCFQPGHHIKDCPTN 132
            P RPLP +YVC RC Q GH IKDCPTN
Sbjct:  199 PDRPLPPSYVCYRCGQKGHWIKDCPTN 225
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207687.5972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6A4H936_9AGAR2.440e-659.09DWNN-domain-containing protein n=1 Tax=Gymnopus an... [more]
UPI001E8D57331.600e-562.86DWNN domain-containing protein n=1 Tax=Lentinula e... [more]
A0A1Q3DZT5_LENED1.620e-562.86Zinc knuckle domain-containing protein n=1 Tax=Len... [more]
A0A1A6HDA4_NEOLE2.150e-570.37Uncharacterized protein n=1 Tax=Neotoma lepida Tax... [more]
A0A4S8LGN4_DENBC2.990e-547.37DWNN-domain-containing protein n=1 Tax=Dendrothele... [more]
A0A0D0CZ56_9AGAR2.990e-574.07Uncharacterized protein n=1 Tax=Gymnopus luxurians... [more]
A0A498NSR2_LABRO4.010e-553.49E3 ubiquitin-ligase RBBP6-like isoform X2 n=1 Tax=... [more]
D8Q1G9_SCHCM4.010e-574.07Uncharacterized protein (Fragment) n=1 Tax=Schizop... [more]
A0A550CLF6_9AGAR4.040e-574.07DWNN domain-containing protein n=1 Tax=Auriculario... [more]
UPI001C79F9215.590e-574.07DWNN-domain-containing protein n=1 Tax=Guyanagaste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207687contigH-elongata_contig207687:850..1053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDWNN domain
Ec32 orthologEc-05_002370.1
Exons1
Model size204
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.8930244-UTR-H-elongata_contig207687:849..8671622930160.8930244-UTR-H-elongata_contig207687:849..867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207687 850..867 +
1691679304.5424597-UTR-H-elongata_contig207687:849..8671691679304.5424597-UTR-H-elongata_contig207687:849..867Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig207687 850..867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.907761-CDS-H-elongata_contig207687:867..10531622930160.907761-CDS-H-elongata_contig207687:867..1053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207687 868..1053 +
1691679304.5531058-CDS-H-elongata_contig207687:867..10531691679304.5531058-CDS-H-elongata_contig207687:867..1053Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207687 868..1053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207687.5972.1prot_H-elongata_contig207687.5972.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207687 868..1053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207687.5972.1

>prot_H-elongata_contig207687.5972.1 ID=prot_H-elongata_contig207687.5972.1|Name=mRNA_H-elongata_contig207687.5972.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=62bp
MPHPGIDRGMGPGRPLPSTYVCRRCFQPGHHIKDCPTNGKDPRVPGCLKD
VKGARGTPVPRL
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mRNA from alignment at H-elongata_contig207687:850..1053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207687.5972.1 ID=mRNA_H-elongata_contig207687.5972.1|Name=mRNA_H-elongata_contig207687.5972.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=204bp|location=Sequence derived from alignment at H-elongata_contig207687:850..1053+ (Himanthalia elongata Himel1 dioecious)
AGGGGTCCCGGTGGCCCGATGCCCCACCCGGGGATAGATAGAGGTATGGG
CCCCGGAAGACCGTTGCCGTCGACTTACGTCTGCCGTCGATGTTTCCAAC
CTGGGCACCATATCAAGGATTGTCCCACCAACGGTAAGGATCCCCGGGTT
CCAGGATGCCTAAAAGACGTTAAAGGTGCTCGCGGAACTCCCGTGCCGCG
TTTG
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Coding sequence (CDS) from alignment at H-elongata_contig207687:850..1053+

>mRNA_H-elongata_contig207687.5972.1 ID=mRNA_H-elongata_contig207687.5972.1|Name=mRNA_H-elongata_contig207687.5972.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at H-elongata_contig207687:850..1053+ (Himanthalia elongata Himel1 dioecious)
ATGCCCCACCCGGGGATAGATAGAGGTATGGGCCCCGGAAGACCGTTGCC
GTCGACTTACGTCTGCCGTCGATGTTTCCAACCTGGGCACCATATCAAGG
ATTGTCCCACCAACGGTAAGGATCCCCGGGTTCCAGGATGCCTAAAAGAC
GTTAAAGGTGCTCGCGGAACTCCCGTGCCGCGTTTGATGCCCCACCCGGG
GATAGATAGAGGTATGGGCCCCGGAAGACCGTTGCCGTCGACTTACGTCT
GCCGTCGATGTTTCCAACCTGGGCACCATATCAAGGATTGTCCCACCAAC
GGTAAGGATCCCCGGGTTCCAGGATGCCTAAAAGACGTTAAAGGTGCTCG
CGGAACTCCCGTGCCGCGTTTG
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