mRNA_H-elongata_contig207634.5970.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207634.5970.1
Unique NamemRNA_H-elongata_contig207634.5970.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207634.5970.1 vs. uniprot
Match: A0A6H5KVU5_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVU5_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 3.300e-23
Identity = 65/131 (49.62%), Postives = 78/131 (59.54%), Query Frame = 1 
Query:    1 MLRDAILKRFFNKRYDEAVFAVPEPSYVFEMAACMSPFLHDLKWLPKFCSSPEEADRVDKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSNKR----KRPAGLFATPSASKQQDDEQAQRMADSGLFG 381
            ML  A+ KRFF+KRYD  V AVP   YVFEMAACMSP LH L WL   CSS EEA RV K I+ KVVDLMV +AEGAG    +  E D + +S       KR  G     ++      E+ +R+  SG+FG
Sbjct:  543 MLAAALDKRFFSKRYDANVVAVPPSDYVFEMAACMSPALHTLPWLTSMCSSDEEAGRVHKLIKGKVVDLMVKLAEGAGAYPGKATEGDTSGASASAPPPFKRSRGPLTVGTS------ERTKRLLKSGVFG 667
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207634.5970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KVU5_9PHAE3.300e-2349.62Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207634contigH-elongata_contig207634:624..1028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size407
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.770781-CDS-H-elongata_contig207634:623..10281622930160.770781-CDS-H-elongata_contig207634:623..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207634 624..1028 +
1691679304.4622827-CDS-H-elongata_contig207634:623..10281691679304.4622827-CDS-H-elongata_contig207634:623..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207634 624..1028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207634.5970.1prot_H-elongata_contig207634.5970.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207634 624..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207634.5970.1

>prot_H-elongata_contig207634.5970.1 ID=prot_H-elongata_contig207634.5970.1|Name=mRNA_H-elongata_contig207634.5970.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MLRDAILKRFFNKRYDEAVFAVPEPSYVFEMAACMSPFLHDLKWLPKFCS
SPEEADRVDKYIRTKVVDLMVSMAEGAGMQAEEQPESDETTSSNKRKRPA
GLFATPSASKQQDDEQAQRMADSGLFGDDSEGDGD
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mRNA from alignment at H-elongata_contig207634:624..1028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207634.5970.1 ID=mRNA_H-elongata_contig207634.5970.1|Name=mRNA_H-elongata_contig207634.5970.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=405bp|location=Sequence derived from alignment at H-elongata_contig207634:624..1028+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCGAGATGCCATCCTCAAGCGCTTTTTCAACAAGCGCTACGATGA
GGCCGTCTTCGCCGTACCGGAGCCGAGCTACGTTTTCGAGATGGCAGCGT
GCATGAGCCCCTTCCTGCACGACCTCAAGTGGCTGCCAAAGTTTTGCAGT
AGCCCCGAGGAAGCGGACCGTGTTGACAAGTACATCCGGACGAAGGTGGT
CGACTTGATGGTGAGCATGGCGGAGGGAGCGGGGATGCAGGCAGAGGAGC
AGCCCGAATCCGACGAGACCACGTCTTCCAACAAGCGCAAGCGTCCCGCC
GGCTTGTTCGCCACGCCCAGCGCGTCCAAGCAGCAGGACGACGAACAGGC
CCAGCGAATGGCCGACAGCGGCCTTTTTGGTGACGATTCCGAAGGGGACG
GCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig207634:624..1028+

>mRNA_H-elongata_contig207634.5970.1 ID=mRNA_H-elongata_contig207634.5970.1|Name=mRNA_H-elongata_contig207634.5970.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig207634:624..1028+ (Himanthalia elongata Himel1 dioecious)
ATGCTTCGAGATGCCATCCTCAAGCGCTTTTTCAACAAGCGCTACGATGA
GGCCGTCTTCGCCGTACCGGAGCCGAGCTACGTTTTCGAGATGGCAGCGT
GCATGAGCCCCTTCCTGCACGACCTCAAGTGGCTGCCAAAGTTTTGCAGT
AGCCCCGAGGAAGCGGACCGTGTTGACAAGTACATCCGGACGAAGGTGGT
CGACTTGATGGTGAGCATGGCGGAGGGAGCGGGGATGCAGGCAGAGGAGC
AGCCCGAATCCGACGAGACCACGTCTTCCAACAAGCGCAAGCGTCCCGCC
GGCTTGTTCGCCACGCCCAGCGCGTCCAAGCAGCAGGACGACGAACAGGC
CCAGCGAATGGCCGACAGCGGCCTTTTTGGTGACGATTCCGAAGGGGACG
GCGACATGCTTCGAGATGCCATCCTCAAGCGCTTTTTCAACAAGCGCTAC
GATGAGGCCGTCTTCGCCGTACCGGAGCCGAGCTACGTTTTCGAGATGGC
AGCGTGCATGAGCCCCTTCCTGCACGACCTCAAGTGGCTGCCAAAGTTTT
GCAGTAGCCCCGAGGAAGCGGACCGTGTTGACAAGTACATCCGGACGAAG
GTGGTCGACTTGATGGTGAGCATGGCGGAGGGAGCGGGGATGCAGGCAGA
GGAGCAGCCCGAATCCGACGAGACCACGTCTTCCAACAAGCGCAAGCGTC
CCGCCGGCTTGTTCGCCACGCCCAGCGCGTCCAAGCAGCAGGACGACGAA
CAGGCCCAGCGAATGGCCGACAGCGGCCTTTTTGGTGACGATTCCGAAGG
GGACGGCGAC
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