mRNA_H-elongata_contig207630.5969.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207630.5969.1
Unique NamemRNA_H-elongata_contig207630.5969.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: D8LDZ0_ECTSI (VWFA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDZ0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 9.510e-23
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDEVR 165
            MGKILSSLHGVS+HGK NF A + IAQLALKHRRNKHGGQRIIIFV+SPIEDE +
Sbjct:   63 MGKILSSLHGVSVHGKTNFAAGIQIAQLALKHRRNKHGGQRIIIFVSSPIEDETK 117
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A835Z3J6_9STRA (Putative 26S proteasome non-ATPase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3J6_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.890e-17
Identity = 39/55 (70.91%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDEVR 165
            MGKILSSLH V I G+    AAV IAQLALKHRRNKHGGQR+++FVASP+ D+V+
Sbjct:   69 MGKILSSLHDVKIGGRTCVSAAVQIAQLALKHRRNKHGGQRLVLFVASPVTDDVK 123
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A7S2V4F9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.610e-17
Identity = 39/53 (73.58%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDE 159
            MGKIL+SLH V I G+ N  AAV IAQLALKHRRNKHGGQR++IFV SP+ DE
Sbjct:   99 MGKILASLHEVPIQGRLNLAAAVQIAQLALKHRRNKHGGQRVVIFVGSPVLDE 151
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A7S2CFG7_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFG7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.020e-14
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDE 159
            MGKI+ S+H V+I GK NF   V +A LALKHRRNK+GGQRII+FV SP+ DE
Sbjct:   76 MGKIMGSIHDVNIFGKMNFVDGVQVAWLALKHRRNKNGGQRIIVFVGSPVHDE 128
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A2R5G3W1_9STRA (26S proteasome non-ATPase regulatory subunit 4-like n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G3W1_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.470e-14
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDEVR 165
            MG+ILS+   + + GKANF A + IAQLALKHR+NK+GGQRI++FV SP+E E R
Sbjct:   63 MGRILSATANIRVGGKANFAAGLQIAQLALKHRKNKNGGQRIVMFVGSPVEAEER 117
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A7S4A015_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A015_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.620e-13
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDE 159
            MG IL+SLH  S+ G+ NF   V +AQLALKHRRNK+G QRI++FV SP+E E
Sbjct:   73 MGNILNSLHNASVGGQLNFVEGVQVAQLALKHRRNKNGAQRIVLFVGSPVEAE 125
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A0P1B661_PLAHL (Multiubiquitin chain binding protein mbp1 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B661_PLAHL)

HSP 1 Score: 71.2 bits (173), Expect = 3.330e-13
Identity = 30/53 (56.60%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDE 159
            MG +LS++HGV I G      A+ +AQLALKHRRNK GGQR+++F+ SPIE++
Sbjct:   69 MGTLLSAIHGVKIGGSMKLSNAIQVAQLALKHRRNKTGGQRVVVFIGSPIEED 121
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: I1BQZ9_RHIO9 (VWFA domain-containing protein n=5 Tax=Rhizopus TaxID=4842 RepID=I1BQZ9_RHIO9)

HSP 1 Score: 70.5 bits (171), Expect = 6.840e-13
Identity = 32/53 (60.38%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDE 159
            +GKILS+LHG+   GK+NF  ++ IAQLALKHR+N++  QRII+FVASP+E +
Sbjct:   69 VGKILSALHGIKAGGKSNFLTSIQIAQLALKHRQNRNQHQRIIVFVASPLETD 121
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A4D9DBB3_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBB3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.180e-13
Identity = 30/55 (54.55%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDEVR 165
            +GK+LS LHGV + G+ +   AV +AQLALKHRRNK+G QR+++FV SP+E + +
Sbjct:   69 IGKLLSCLHGVRMGGRVDMAGAVQVAQLALKHRRNKNGSQRVVVFVCSPLEADAK 123
[Close]
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Match: A0A7S1B541_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B541_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 1.070e-12
Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPIEDEVR 165
            MGK+LS+LH + I G+A+  ++V +A LALKHRRNK+GGQR+I+FV SP+  E R
Sbjct:   72 MGKLLSALHQIPITGEADVASSVQVAHLALKHRRNKNGGQRVIVFVGSPVLTEDR 126
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207630.5969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDZ0_ECTSI9.510e-2383.64VWFA domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A835Z3J6_9STRA2.890e-1770.91Putative 26S proteasome non-ATPase regulatory subu... [more]
A0A7S2V4F9_9STRA6.610e-1773.58Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2CFG7_9STRA1.020e-1466.04Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A2R5G3W1_9STRA6.470e-1461.8226S proteasome non-ATPase regulatory subunit 4-lik... [more]
A0A7S4A015_9STRA1.620e-1362.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0P1B661_PLAHL3.330e-1356.60Multiubiquitin chain binding protein mbp1 n=1 Tax=... [more]
I1BQZ9_RHIO96.840e-1360.38VWFA domain-containing protein n=5 Tax=Rhizopus Ta... [more]
A0A4D9DBB3_9STRA8.180e-1354.55VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A7S1B541_9STRA1.070e-1258.18Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207630contigH-elongata_contig207630:2..609 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue9.8e-19
Seed eggNOG ortholog2880.D8LDZ0
Preferred namePSMD4
KEGG rclassRC00002,RC00078
KEGG koko:K00889,ko:K03029
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko03050,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05169,ko05231,map00562,map01100,map03050,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05169,map05231
KEGG ModuleM00130,M00341
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000502,GO:0000819,GO:0003674,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007276,GO:0007283,GO:0007346,GO:0008134,GO:0008150,GO:0008152,GO:0008270,GO:0008540,GO:0008541,GO:0009056,GO:0009057,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0016043,GO:0016579,GO:0019538,GO:0019899,GO:0019941,GO:0019953,GO:0022402,GO:0022414,GO:0022607,GO:0022624,GO:0030071,GO:0030163,GO:0031331,GO:0031593,GO:0031624,GO:0031974,GO:0031981,GO:0032182,GO:0032270,GO:0032436,GO:0032501,GO:0032504,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034622,GO:0036211,GO:0036435,GO:0042802,GO:0043130,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043248,GO:0043412,GO:0043632,GO:0043687,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046914,GO:0048232,GO:0048285,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051247,GO:0051276,GO:0051603,GO:0051704,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0062033,GO:0065003,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0090068,GO:0098813,GO:0140014,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903047,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
EggNOG free text desc.Protein of unknown function (DUF1631)
EggNOG OGsCOG5148@1,KOG2884@2759
EC2.7.1.68
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03051,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionvon Willebrand factor, type A
Ec32 orthologEc-23_003240.1
Exons2
Model size168
Cds size168
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.7207372-CDS-H-elongata_contig207630:1..821622930160.7207372-CDS-H-elongata_contig207630:1..82Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207630 2..82 +
1691679304.4371688-CDS-H-elongata_contig207630:1..821691679304.4371688-CDS-H-elongata_contig207630:1..82Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207630 2..82 +
1622930160.7350547-CDS-H-elongata_contig207630:522..6091622930160.7350547-CDS-H-elongata_contig207630:522..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207630 523..609 +
1691679304.4524667-CDS-H-elongata_contig207630:522..6091691679304.4524667-CDS-H-elongata_contig207630:522..609Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207630 523..609 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207630.5969.1prot_H-elongata_contig207630.5969.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207630 2..609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207630.5969.1

>prot_H-elongata_contig207630.5969.1 ID=prot_H-elongata_contig207630.5969.1|Name=mRNA_H-elongata_contig207630.5969.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MGKILSSLHGVSIHGKANFEAAVHIAQLALKHRRNKHGGQRIIIFVASPI
EDEVR*
back to top

mRNA from alignment at H-elongata_contig207630:2..609+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207630.5969.1 ID=mRNA_H-elongata_contig207630.5969.1|Name=mRNA_H-elongata_contig207630.5969.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=608bp|location=Sequence derived from alignment at H-elongata_contig207630:2..609+ (Himanthalia elongata Himel1 dioecious)
ATGGGAAAGATTCTGTCGTCTCTGCACGGAGTTTCTATCCATGGGAAGGC
GAACTTCGAGGCGGCCGTCCACATCGCTCAGGTGGCGAACTTCGAGGCGG
TAGAGGAGGAAACTCCATATTTGAGGGTTTCCAGATCCCCCGTCAAAAAG
CTGCACGAAAACTCAACAGTTGGTCACATATGTGTTTCTTTTTGTGTGTC
TGGCCCATGAACGATACGATAACGTACCAGGTTTTGGGATATAGAGGAAG
ACGCGAGTCGACCCCGCCACCACCCCTCTTATGGTACCGTAGATATGTCA
ATATGTGATACTATAACTGTACTTTATTCTGCATAGCCTGTTTGAGGTGC
TTCGGTTGAGGAGGTTGCCACGCCACGCTATGCAGTCGTTATCTCCCTCT
AATTTTTGTTGAAGGCGGTAGGGCGGGACCGCTAATAATTTCACGCGCGC
GTCGTCATCATCGTGATCGTCGTTGCCGCCGCCGCTTCTCCCGCCGTCAT
TGCCGTCTTCTCGTTTGGAAGCTGGCTCTCAAGCACCGGAGAAATAAGCA
CGGGGGACAGAGGATCATCATCTTCGTCGCGTCTCCTATCGAGGACGAGG
TGCGTTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig207630:2..609+

>mRNA_H-elongata_contig207630.5969.1 ID=mRNA_H-elongata_contig207630.5969.1|Name=mRNA_H-elongata_contig207630.5969.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig207630:2..609+ (Himanthalia elongata Himel1 dioecious)
ATGGGAAAGATTCTGTCGTCTCTGCACGGAGTTTCTATCCATGGGAAGGC
GAACTTCGAGGCGGCCGTCCACATCGCTCAGATGGGAAAGATTCTGTCGT
CTCTGCACGGAGTTTCTATCCATGGGAAGGCGAACTTCGAGGCGGCCGTC
CACATCGCTCAGCTGGCTCTCAAGCACCGGAGAAATAAGCACGGGGGACA
GAGGATCATCATCTTCGTCGCGTCTCCTATCGAGGACGAGGTGCGTTAAC
TGGCTCTCAAGCACCGGAGAAATAAGCACGGGGGACAGAGGATCATCATC
TTCGTCGCGTCTCCTATCGAGGACGAGGTGCGTTAA
back to top