mRNA_H-elongata_contig207618.5968.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207618.5968.1
Unique NamemRNA_H-elongata_contig207618.5968.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: D7FRI0_ECTSI (M20_dimer domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRI0_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 4.760e-30
Identity = 54/67 (80.60%), Postives = 63/67 (94.03%), Query Frame = 1
Query:   19 RSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
            +S  PA+RS+PDTPLW+AMEKAAS +IKGA+LVPVMLPG TDCR+YRG+GGAVAYGANLLEPS+TFG
Sbjct:  385 QSHIPASRSEPDTPLWKAMEKAASAVIKGASLVPVMLPGGTDCRYYRGIGGAVAYGANLLEPSMTFG 451          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A835YY18_9STRA (M20_dimer domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY18_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.940e-11
Identity = 35/65 (53.85%), Postives = 42/65 (64.62%), Query Frame = 1
Query:   25 FTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAV-AYGANLLEPSLTF 216
            F  A+RS  DTP+W A+E+AAS +  GA  +PVMLPGATD RF+R  GG   AYG  LL     F
Sbjct:  423 FEMASRSPFDTPMWHAIEQAASTLFPGAKCIPVMLPGATDNRFFREHGGTRGAYGTGLLHLKFQF 487          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7W0R051_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0R051_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 2.300e-9
Identity = 32/60 (53.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:   34 ATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
            ATRS  D PLW A+   A     GA LVP ++ G TD RFYR L G++AYGA L  PS+T
Sbjct:  354 ATRSPIDNPLWEALATNAQVAYPGAELVPGIIVGGTDARFYR-LKGSIAYGAGLFSPSVT 412          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7Y2IFP1_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IFP1_9ACTN)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-8
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
            PAT S  D PLW A+EKA +      TLVP ++ G TD RF+R   GA+A+GA LL P ++
Sbjct:  349 PATASPTDNPLWSALEKAMARPYPELTLVPSLVTGGTDSRFFR-QKGAIAFGAGLLSPQVS 408          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A538AZF4_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538AZF4_9ACTN)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 26/65 (40.00%), Postives = 41/65 (63.08%), Query Frame = 1
Query:   22 SFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTF 216
            S  PAT S  +TPLW ++++    ++ G+T++P ++ GATD RF+R   G  AYGA L    ++F
Sbjct:  348 SNDPATASPVETPLWDSIQRVTEGLVPGSTIIPFIIVGATDARFFR-RAGMTAYGAGLFSDRISF 411          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: UPI002006AE46 (M20/M25/M40 family metallo-hydrolase n=1 Tax=Aciditerrimonas ferrireducens TaxID=667306 RepID=UPI002006AE46)

HSP 1 Score: 57.4 bits (137), Expect = 7.180e-8
Identity = 28/67 (41.79%), Postives = 38/67 (56.72%), Query Frame = 1
Query:   19 RSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
            R   P + S  DTPLW A+ ++A  I+ G+ L+P ++ G TD RF+R LG   AYG  L    L  G
Sbjct:  350 RHRDPGSESPTDTPLWHALARSAQQIVPGSELLPFLVAGGTDSRFFRALG-VPAYGFGLFSERLPLG 415          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: UPI001A257FDD (M20/M25/M40 family metallo-hydrolase n=1 Tax=Candidatus Dormibacteraeota bacterium TaxID=2052315 RepID=UPI001A257FDD)

HSP 1 Score: 57.0 bits (136), Expect = 9.800e-8
Identity = 28/59 (47.46%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   37 TRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
            T S+ DTPLW A+ +AA+++   AT +P ML G TD RF+R LG   AYG  L   ++T
Sbjct:  350 TESEVDTPLWDAINRAATDVYPEATCIPSMLTGGTDARFFRSLG-IPAYGMGLYSRAMT 407          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7V8YMH5_9ACTN (Peptidase dimerization domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YMH5_9ACTN)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-7
Identity = 25/62 (40.32%), Postives = 36/62 (58.06%), Query Frame = 1
Query:   31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTF 216
            P T S  DTPLW  +E+ +  ++K + LVP M+ G TD R++R   G+V YG  L    + F
Sbjct:   51 PPTASPTDTPLWECLERVSGKLVKDSALVPFMMVGGTDNRYFR-RAGSVGYGFGLFSKRIGF 111          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7C7TA88_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7C7TA88_9ACTN)

HSP 1 Score: 56.2 bits (134), Expect = 1.830e-7
Identity = 27/61 (44.26%), Postives = 37/61 (60.66%), Query Frame = 1
Query:   31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLT 213
            PAT S  DTP+WR +++       GA L+P ++ GATD RFYR  G ++AYGA L    + 
Sbjct:  355 PATFSSTDTPMWRLLQELMQKAHPGAPLIPSLIVGATDARFYREKG-SIAYGAGLFSDRVN 414          
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Match: A0A7Y2INQ7_9ACTN (M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7Y2INQ7_9ACTN)

HSP 1 Score: 55.8 bits (133), Expect = 2.260e-7
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1
Query:   31 PATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCRFYRGLGGAVAYGANLLEPSLTFG 219
            PAT S+P  PLW A+  +A  +    +L+P ++P ATD RF+R   G VAYG  + + +L+FG
Sbjct:  208 PATGSEPRGPLWEAIADSAEALSGSRSLLPCLIPVATDARFFRH-DGVVAYGVGMFDDALSFG 269          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207618.5968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRI0_ECTSI4.760e-3080.60M20_dimer domain-containing protein n=2 Tax=Ectoca... [more]
A0A835YY18_9STRA2.940e-1153.85M20_dimer domain-containing protein n=1 Tax=Tribon... [more]
A0A7W0R051_9ACTN2.300e-953.33M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidi... [more]
A0A7Y2IFP1_9ACTN1.100e-849.18M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidi... [more]
A0A538AZF4_9ACTN1.500e-840.00M20/M25/M40 family metallo-hydrolase n=1 Tax=Actin... [more]
UPI002006AE467.180e-841.79M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidi... [more]
UPI001A257FDD9.800e-847.46M20/M25/M40 family metallo-hydrolase n=1 Tax=Candi... [more]
A0A7V8YMH5_9ACTN1.040e-740.32Peptidase dimerization domain-containing protein n... [more]
A0A7C7TA88_9ACTN1.830e-744.26M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidi... [more]
A0A7Y2INQ7_9ACTN2.260e-742.86M20/M25/M40 family metallo-hydrolase n=1 Tax=Acidi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207618contigH-elongata_contig207618:713..934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue1.9e-25
Seed eggNOG ortholog2880.D7FRI0
EggNOG free text desc.aminoacylase activity
EggNOG OGsCOG0624@1,KOG2275@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size222
Cds size222
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930160.6871614-CDS-H-elongata_contig207618:712..9341622930160.6871614-CDS-H-elongata_contig207618:712..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207618 713..934 -
1691679304.4238083-CDS-H-elongata_contig207618:712..9341691679304.4238083-CDS-H-elongata_contig207618:712..934Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207618 713..934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207618.5968.1prot_H-elongata_contig207618.5968.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207618 713..934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207618.5968.1

>prot_H-elongata_contig207618.5968.1 ID=prot_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVFDPDRSFTPATRSKPDTPLWRAMEKAASNIIKGATLVPVMLPGATDCR
FYRGLGGAVAYGANLLEPSLTFG*
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mRNA from alignment at H-elongata_contig207618:713..934-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207618.5968.1 ID=mRNA_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=222bp|location=Sequence derived from alignment at H-elongata_contig207618:713..934- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTCGATCCCGACAGATCTTTCACCCCGGCAACGCGGTCGAAGCC CGACACGCCTCTCTGGCGAGCCATGGAAAAGGCAGCCTCAAACATCATTA AGGGGGCGACCCTGGTTCCTGTCATGCTCCCCGGGGCAACGGACTGCCGA TTCTACCGGGGGCTGGGAGGCGCGGTTGCCTACGGCGCCAACCTCCTGGA GCCATCGCTCACGTTCGGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig207618:713..934-

>mRNA_H-elongata_contig207618.5968.1 ID=mRNA_H-elongata_contig207618.5968.1|Name=mRNA_H-elongata_contig207618.5968.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig207618:713..934- (Himanthalia elongata Himel1 dioecious)
ATGGTTTTCGATCCCGACAGATCTTTCACCCCGGCAACGCGGTCGAAGCC
CGACACGCCTCTCTGGCGAGCCATGGAAAAGGCAGCCTCAAACATCATTA
AGGGGGCGACCCTGGTTCCTGTCATGCTCCCCGGGGCAACGGACTGCCGA
TTCTACCGGGGGCTGGGAGGCGCGGTTGCCTACGGCGCCAACCTCCTGGA
GCCATCGCTCACGTTCGGGTAAATGGTTTTCGATCCCGACAGATCTTTCA
CCCCGGCAACGCGGTCGAAGCCCGACACGCCTCTCTGGCGAGCCATGGAA
AAGGCAGCCTCAAACATCATTAAGGGGGCGACCCTGGTTCCTGTCATGCT
CCCCGGGGCAACGGACTGCCGATTCTACCGGGGGCTGGGAGGCGCGGTTG
CCTACGGCGCCAACCTCCTGGAGCCATCGCTCACGTTCGGGTAA
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