mRNA_H-elongata_contig20751.5960.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE) HSP 1 Score: 128 bits (322), Expect = 9.930e-27 Identity = 55/88 (62.50%), Postives = 72/88 (81.82%), Query Frame = 3
Query: 309 DDMFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRIDQSPSVPLYPTSKKRQA 572
+ +FG MAPCW +LERA AYMD DQL YM+ LIL H+++PMSRDQLL+R +SCLHEQ HI+ AFVKMFD +DQ+P +PL+P +++ A
Sbjct: 958 EQVFGFMAPCWHILERAHAYMDPDQLSYMKSLILAHLRRPMSRDQLLKRVKSCLHEQQHIYTAFVKMFDHVDQTPLMPLFPATRRTPA 1045
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI) HSP 1 Score: 127 bits (318), Expect = 2.820e-26 Identity = 62/99 (62.63%), Postives = 74/99 (74.75%), Query Frame = 3
Query: 294 KEARTDDMFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRID----QSPSVPLYPTSKKRQASP 578
+E D+FG M PCW LLERA+AY+D+DQLVYMRGLIL HV+KPM+R QLLERAESCL EQ +FAAFVK FDR+D ++P VP YP K + P
Sbjct: 843 EELLEQDVFGFMGPCWSLLERAQAYLDQDQLVYMRGLILRHVEKPMTRAQLLERAESCLAEQRQVFAAFVKTFDRVDLIHAEAPPVPFYPAMKTARDDP 941
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE) HSP 1 Score: 125 bits (315), Expect = 7.340e-26 Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 3
Query: 294 KEARTDDMFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRID----QSPSVPLYPTSKKRQASP 578
+E D+FG M PCW LLE+A+AY+D+DQLVYMRGLIL HV+KPM+R QLLERAESCL EQ +FAAFVK FDR+D ++P VP YP K + P
Sbjct: 1048 EELLEQDVFGFMGPCWSLLEKAQAYLDQDQLVYMRGLILRHVQKPMTRAQLLERAESCLAEQPQVFAAFVKTFDRVDLIHAEAPPVPFYPAMKTARDDP 1146
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE) HSP 1 Score: 123 bits (308), Expect = 5.100e-25 Identity = 84/189 (44.44%), Postives = 107/189 (56.61%), Query Frame = 3
Query: 222 GVGSGSSAPDMGAAPHGSN---VQQATKEART--DDMFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRIDQS----PSVPLYPTSKKRQASPGSIPRQMRPYTSAHGSPSVVASRSETIESARFVVTPHTFRGGMAKHNNINPSDASGVGMDR 761
G G G A + G++ GS + + KEA D FG M PCW LLERA AYMD+DQLVYMRGL++T++ KPM+RDQLLERAESCL EQ IF AFVK+FDRI+ P VPLY +K+ + PR + TS G V+ + AR + +T + + P A G G DR
Sbjct: 987 GSGRGHIASNGGSSSSGSGGYPLYRKPKEAAVNEDGEFGYMYPCWSLLERANAYMDQDQLVYMRGLLITNIHKPMTRDQLLERAESCLQEQPEIFMAFVKVFDRINHPYTDPPPVPLYSGTKRPTPDTPAEPRSVL-RTSFTGR--VLPTAGHIESRARASYSSYTQQHAVVPTYAAPPGAAVGGGGDR 1172
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI) HSP 1 Score: 121 bits (303), Expect = 1.830e-24 Identity = 67/115 (58.26%), Postives = 79/115 (68.70%), Query Frame = 3
Query: 276 NVQQATKEARTDD--MFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRI-----DQSPSVPLYPTSKKRQASPGSIPRQM 599
+V KEA D+ FG M PCWRLLERA AYMD+DQLVYMRGL++TH+ KPM+R QLLERAESCL EQ IF AFVK+FDRI D P VPLY +K+ + PR +
Sbjct: 815 HVNAKPKEAAADEDGEFGFMYPCWRLLERANAYMDQDQLVYMRGLLVTHIHKPMTRAQLLERAESCLQEQPEIFMAFVKVFDRINHPYTDPHP-VPLYSGTKRPTPDTPAEPRSV 928
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: D7G9E4_ECTSI (BAH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E4_ECTSI) HSP 1 Score: 114 bits (284), Expect = 3.660e-22 Identity = 66/180 (36.67%), Postives = 92/180 (51.11%), Query Frame = 3
Query: 309 DDMFGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQ-------------------------------------------------LLERAESCLHEQGHIFAAFVKMFDRIDQSPSVPLYPTSKKRQASPGSIPRQMRPYTSAHGSPSVVASRSETIESARFVVTPHTFRG 701
D +FG MAPCW LLERA+AYMD DQL YM+GLIL H+++PMSRDQ LL+R +SCLHEQ HI+ AFVKMFD +DQ+P +PL+P +++ +P ++P + H + VA+ +E +++ P T G
Sbjct: 853 DQVFGFMAPCWHLLERAQAYMDPDQLSYMKGLILAHLRRPMSRDQFFEFLRGSLSLDDYGLGCACGAYTLLHFLGALTPTPPLRFSTPHFRCHKLLKRVKSCLHEQQHIYTAFVKMFDHVDQTPLMPLFPATRR---TPAAMPPR------GHVPHAAVAAYPPPVEGRPYMIRPGTTLG 1023
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE) HSP 1 Score: 109 bits (273), Expect = 8.130e-21 Identity = 57/90 (63.33%), Postives = 67/90 (74.44%), Query Frame = 3
Query: 318 FGVMAPCWRLLERAKAYMDKDQLVYMRGLILTHVKKPMSRDQLLERAESCLHEQGHIFAAFVKMFDRID----QSPSVPLYPTSKKRQAS 575
FG MAPCWR LE A A++DKDQL YM+GLI THV+KPM+RDQLLERA+SCL Q IF AFVK FDRI ++ VPLY + +KR S
Sbjct: 1021 FGFMAPCWRQLEMAHAFIDKDQLRYMKGLITTHVRKPMTRDQLLERADSCLQGQPEIFVAFVKTFDRISHVHAEAHLVPLY-SGRKRSLS 1109 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20751.5960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20751.5960.1 >prot_H-elongata_contig20751.5960.1 ID=prot_H-elongata_contig20751.5960.1|Name=mRNA_H-elongata_contig20751.5960.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=361bp MRDAGLNEGQRHAIWDRRLVPHTMPHAPHVRHPGGQSGYGVGSGSSAPDMback to top mRNA from alignment at H-elongata_contig20751:3502..6539+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20751.5960.1 ID=mRNA_H-elongata_contig20751.5960.1|Name=mRNA_H-elongata_contig20751.5960.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3038bp|location=Sequence derived from alignment at H-elongata_contig20751:3502..6539+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20751:3502..6539+ >mRNA_H-elongata_contig20751.5960.1 ID=mRNA_H-elongata_contig20751.5960.1|Name=mRNA_H-elongata_contig20751.5960.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2166bp|location=Sequence derived from alignment at H-elongata_contig20751:3502..6539+ (Himanthalia elongata Himel1 dioecious)back to top |