mRNA_H-elongata_contig20751.5958.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20751.5958.1
Unique NamemRNA_H-elongata_contig20751.5958.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: A0A6H5JX23_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX23_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 4.530e-23
Identity = 63/100 (63.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGS--YSGLDQDDNSIDNMDCAGSYAVWAVTADHDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALA 282
            ML+ YL AAK+ VQAKQ+RP V VHVRL G     G   D++S+     A SYAVWAVTA  DA     GV RV CSEMAQTEVP SA+QRVQCEEEALA
Sbjct:  547 MLSSYLEAAKKAVQAKQSRPGVVVHVRLGGKGDKGGTPGDESSV-----ASSYAVWAVTAGRDAGSNARGVARVGCSEMAQTEVPISAIQRVQCEEEALA 641
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: D7G9E3_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E3_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.390e-23
Identity = 61/98 (62.24%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTADHDAC----GVVRVACSEMAQTEVPRSAVQRVQCEEEALA 282
            ML+ YL AAK+ VQAKQ+RP VA+HVRL G     D+     D    A SYAVWAVTA  +A     GV RV CSEMAQTEVP SA+QRVQCEEEALA
Sbjct:  345 MLSSYLEAAKKAVQAKQSRPGVAIHVRLGGEG---DKGGTPGDKSSVASSYAVWAVTAGRNAGSNARGVARVGCSEMAQTEVPMSAIQRVQCEEEALA 439
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: D8LCW0_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 8.400e-23
Identity = 60/94 (63.83%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTADHDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALA 282
            ML+ YLHAAK+V+Q KQA P VAVHVRL  S S    D     ++  A SYAVWA+TA   + GV RVACSEMAQT VP SAVQRVQ EEEALA
Sbjct:  396 MLSTYLHAAKDVLQKKQASPGVAVHVRLGDSGSAAKGDKGVTTSV--ASSYAVWAITAGRHSPGVTRVACSEMAQTNVPMSAVQRVQSEEEALA 487
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: D8LCW2_ECTSI (ELM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW2_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 9.840e-22
Identity = 56/94 (59.57%), Postives = 65/94 (69.15%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTADHDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALA 282
            ML+ YLHAAK+VV+AKQA P VAVHVRL G        D        A SYAVWA+T    + GV+RVACSEMAQT+VP  A+QRVQ EE+ALA
Sbjct:  476 MLSTYLHAAKDVVKAKQASPGVAVHVRL-GDGGSEKTGDVEAGTTSVASSYAVWAITVGRHSAGVIRVACSEMAQTKVPIPAIQRVQSEEQALA 568
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: A0A6H5JLS8_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 4.810e-21
Identity = 54/93 (58.06%), Postives = 66/93 (70.97%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTADHDACGVVRVACSEMAQTEVPRSAVQRVQCEEEAL 279
            ML+ YLHAAK+VV+AKQA P VAVHVRL G     +  +        AGSYAVWA+T    + GV+RVACSE+AQT+VP  A+QRVQ EE+AL
Sbjct:  553 MLSTYLHAAKDVVKAKQASPGVAVHVRL-GDAGSKNNGNVEAATTSVAGSYAVWAITVGCHSAGVIRVACSEIAQTKVPIPAIQRVQSEEQAL 644
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BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: A0A6H5KVI2_9PHAE (ELM2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI2_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.800e-20
Identity = 56/94 (59.57%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTADHDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALA 282
            ML+ YLHAA +V+Q KQ  P VAVHVRL G      + D  +     A SYAVWA+ A   + G VRVACSEMAQT VP SAVQRVQ EEEALA
Sbjct:  551 MLSTYLHAATDVLQKKQGFPGVAVHVRL-GDRGSAAKGDKGV-TTSVANSYAVWAIMAGRHSAGAVRVACSEMAQTTVPISAVQRVQSEEEALA 642
[Close]
BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Match: A0A6H5K0T4_9PHAE (BAH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0T4_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 2.290e-15
Identity = 52/94 (55.32%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGSYAVWAVTAD-HDACGVVRVACSEMAQTEVPRSAVQRVQCEEEAL 279
            MLA YL AA  +V++KQARP VA+HVRL G     D             SYAVWA+T     A G VRVACSE+AQTE+P SA+QR  CEEEAL
Sbjct:  539 MLAGYLQAANTMVRSKQARPGVAIHVRLGGKNE--DGXXXXXXXXXXXXSYAVWALTTGVSSASGDVRVACSEIAQTEIPASAIQR--CEEEAL 628
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20751.5958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JX23_9PHAE4.530e-2363.00BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G9E3_ECTSI8.390e-2362.24ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW0_ECTSI8.400e-2363.83ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LCW2_ECTSI9.840e-2259.57ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JLS8_9PHAE4.810e-2158.06ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KVI2_9PHAE5.800e-2059.57ELM2 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5K0T4_9PHAE2.290e-1555.32BAH domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20751contigH-elongata_contig20751:190..871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size282
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930159.780837-CDS-H-elongata_contig20751:189..4501622930159.780837-CDS-H-elongata_contig20751:189..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 190..450 +
1691679304.1143582-CDS-H-elongata_contig20751:189..4501691679304.1143582-CDS-H-elongata_contig20751:189..450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 190..450 +
1622930159.79156-CDS-H-elongata_contig20751:850..8711622930159.79156-CDS-H-elongata_contig20751:850..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 851..871 +
1691679304.130727-CDS-H-elongata_contig20751:850..8711691679304.130727-CDS-H-elongata_contig20751:850..871Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20751 851..871 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20751.5958.1prot_H-elongata_contig20751.5958.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20751 190..871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20751.5958.1

>prot_H-elongata_contig20751.5958.1 ID=prot_H-elongata_contig20751.5958.1|Name=mRNA_H-elongata_contig20751.5958.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=94bp
MLAQYLHAAKEVVQAKQARPDVAVHVRLCGSYSGLDQDDNSIDNMDCAGS
YAVWAVTADHDACGVVRVACSEMAQTEVPRSAVQRVQCEEEALA
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mRNA from alignment at H-elongata_contig20751:190..871+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20751.5958.1 ID=mRNA_H-elongata_contig20751.5958.1|Name=mRNA_H-elongata_contig20751.5958.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=682bp|location=Sequence derived from alignment at H-elongata_contig20751:190..871+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGCTCAGTATCTACACGCGGCCAAAGAGGTAGTCCAGGCGAAGCA
AGCACGTCCCGACGTCGCTGTTCATGTGCGATTGTGTGGCAGCTACAGTG
GTCTTGACCAAGATGATAACTCCATAGATAACATGGACTGTGCCGGAAGC
TACGCCGTGTGGGCCGTCACAGCCGACCACGACGCGTGCGGTGTAGTAAG
GGTAGCATGTTCAGAAATGGCCCAGACCGAGGTCCCACGGTCTGCAGTCC
AAAGAGTGCAGGTGAGGGCGCAAGGCTACAAAGCGCAGACACATGTGCCT
GCGCTTGATTTCCACTGGATAGGCACGGCATGAACCAGCACTAAACTTAT
AGTGTAGGTATCGTTATTTACGACGTACGTGTAGGGAGCACCTCTCTCTG
ATGCGTGGCATATATCAATCAAATGATGCTCCAGCAAAGTGATGGTTCAA
ATAATCCGGCCATCATACTTCTACAGCTAGGCCGAGAGATAACTCGCATC
CCCCGTGCGTGCTCTTTCAGTCGATTTAGGGATTGTACTATCCTAGGCGC
TGAGCGATATAGACAACACGGCCCTCTGCTCACATGCGCCCGTGGGCCAT
TCCTCGGCGAGATGTCTTTGACCCCCTCAAGGATTGATGTCATTGTAATT
TGCTCGAACAGTGCGAGGAGGAGGCCTTGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig20751:190..871+

>mRNA_H-elongata_contig20751.5958.1 ID=mRNA_H-elongata_contig20751.5958.1|Name=mRNA_H-elongata_contig20751.5958.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=564bp|location=Sequence derived from alignment at H-elongata_contig20751:190..871+ (Himanthalia elongata Himel1 dioecious)
ATGTTGGCTCAGTATCTACACGCGGCCAAAGAGGTAGTCCAGGCGAAGCA
AGCACGTCCCGACGTCGCTGTTCATGTGCGATTGTGTGGCAGCTACAGTG
GTCTTGACCAAGATGATAACTCCATAGATAACATGGACTGTGCCGGAAGC
TACGCCGTGTGGGCCGTCACAGCCGACCACGACGCGTGCGGTGTAGTAAG
GGTAGCATGTTCAGAAATGGCCCAGACCGAGGTCCCACGGTCTGCAGTCC
AAAGAGTGCAGATGTTGGCTCAGTATCTACACGCGGCCAAAGAGGTAGTC
CAGGCGAAGCAAGCACGTCCCGACGTCGCTGTTCATGTGCGATTGTGTGG
CAGCTACAGTGGTCTTGACCAAGATGATAACTCCATAGATAACATGGACT
GTGCCGGAAGCTACGCCGTGTGGGCCGTCACAGCCGACCACGACGCGTGC
GGTGTAGTAAGGGTAGCATGTTCAGAAATGGCCCAGACCGAGGTCCCACG
GTCTGCAGTCCAAAGAGTGCAGTGCGAGGAGGAGGCCTTGGCTTGCGAGG
AGGAGGCCTTGGCT
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