mRNA_H-elongata_contig20727.5947.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI) HSP 1 Score: 176 bits (447), Expect = 3.000e-48 Identity = 98/159 (61.64%), Postives = 111/159 (69.81%), Query Frame = 1
Query: 1 PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEP------VVRRVVFVLPFISMVTEKVKHLQRVVAPYNRGRPRRQRIKAR 459
PTSLE +FRRWGLD ALR Y+ LGIEHLYPWQA CL GV EG ++LLYFAPTSGGKTMVAELLLLLRVM LP + G +G R A VVES TG P RR + VLPF+SMVTEK KHLQ +VAPYNRGRP+++RI+ R
Sbjct: 16 PTSLEYLFRRWGLDPALRHYHGRSLGIEHLYPWQARCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLACSTGEGEDEG--RAXXXXXAAVVESGAV-TGLPRKDQTATTRRAIIVLPFVSMVTEKAKHLQSIVAPYNRGRPKKKRIQVR 171
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE) HSP 1 Score: 170 bits (431), Expect = 4.300e-46 Identity = 96/152 (63.16%), Postives = 111/152 (73.03%), Query Frame = 1
Query: 1 PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVVAPYNRGRPRRQRIKA 456
PTSLE +FRRWGLD ALR ++ LGIEHLYPWQASCL GV EG ++LLYFAPTSGGKTMVAELLLLLRVM LP + R G + VVES TG ++R+VV LPF+SMVTEK KHLQ +VAPYNRGRP++QRI+A
Sbjct: 6 PTSLEYLFRRWGLDPALRHHHGRSLGIEHLYPWQASCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLA--RSTGEGEDXXXXXXXXXXAVVESGAI-TG--LLRKVV--LPFVSMVTEKAKHLQSIVAPYNRGRPKKQRIQA 150
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A4P9W377_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W377_9FUNG) HSP 1 Score: 82.0 bits (201), Expect = 3.260e-15 Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 1
Query: 19 IFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVVAPYN 423
+F +G+ + Y I+ LY WQA CL +GV+EGTRNLLY APTS GKTMVAELL+LL+V +++S ++ + +LPFIS+V+EK K+LQ++ A N
Sbjct: 3 LFAEYGIPPQVAEEYIAN-NIKWLYEWQARCLKSKGVLEGTRNLLYSAPTSAGKTMVAELLMLLKV----------------------------IKTS---------KKAIMILPFISIVSEKTKYLQKMFASEN 99
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A1B6EPC6_9HEMI (DEAD domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EPC6_9HEMI) HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13 Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query: 25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
R WGL + + Y GIE+++PWQ CLT +GV+ G RNL+Y APTS GKTMVAE+L + V+ ER+ ++V+ +LPFIS+V EK+ + Q ++
Sbjct: 19 RSWGLPTTILEKY-AAKGIENMFPWQVECLTSDGVLAG-RNLVYSAPTSAGKTMVAEMLTIQTVL------ERK-------------------------------KKVIIILPFISVVREKMLYFQNLL 108
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A167ZTY2_9PEZI (DNA-directed DNA polymerase n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167ZTY2_9PEZI) HSP 1 Score: 76.3 bits (186), Expect = 3.530e-13 Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1
Query: 73 LGIEHLYPWQASCLTE-EGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGR-RQGGPRVEQPKGAMVVESSTCDTGEPVVRR----VVFVLPFISMVTEKVKHLQRVV 411
LGI +YPWQ CLT G++EGTRNL+Y APT GGK++VA++L+L V+ CG +GG E+ +GA TC RR + VLPF+++V EKV+ L+RVV
Sbjct: 173 LGIRTIYPWQKQCLTGGSGLLEGTRNLVYAAPTGGGKSLVADVLMLRHVLGC-------CGDGARGGHTQEEEEGAG--HGHTCLDHRWRRRRQRPKALLVLPFVALVQEKVRWLRRVV 282
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A3N4LBK3_9PEZI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LBK3_9PEZI) HSP 1 Score: 75.1 bits (183), Expect = 8.720e-13 Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1
Query: 28 RWGLDSALRRYYDG--GLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
+WGLDS + +G GIE +Y WQA CL+ G++EG +NL+Y APTS GK++VAE+L++ RVM E A+VV LP++++VTEKVK L++VV
Sbjct: 91 KWGLDS---NFVEGLKNCGIEVMYEWQAECLSMPGLLEGEKNLVYTAPTSAGKSLVAEILMIKRVM-------------------ETRMKAIVV------------------LPYVAIVTEKVKFLKKVV 180
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A1B6JHT8_9HEMI (Helicase ATP-binding domain-containing protein (Fragment) n=2 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6JHT8_9HEMI) HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12 Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query: 25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
R WGL + + Y GIE+++PWQ CLT +GV+ G RNL+Y APTS GKTMVAE+L + V+ ER+ ++V+ +LPFIS+V EK+ + Q ++
Sbjct: 21 RSWGLPTTILEKY-AAKGIENMFPWQVECLTSDGVLAG-RNLVYSAPTSAGKTMVAEILTIQTVL------ERK-------------------------------KKVIIILPFISVVREKMLYFQNLL 110
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A0E9NPB0_SAICN (Uncharacterized protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NPB0_SAICN) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12 Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1
Query: 28 RWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQ-------RVVAPYNRG 429
R+GL SAL Y GI LY WQA CL G+++G+R+++Y APTSGGKTMV+E+L+L RV + + + VLPF+S+VTEK +HL+ +VVA Y G
Sbjct: 144 RYGLQSALVHAY-ARKGIRTLYDWQAKCLDLPGLLDGSRSVVYTAPTSGGKTMVSEILMLKRVFETKS-------------------------------------KAILVLPFVSIVTEKTRHLKSLLEGTDKVVAGYFGG 246
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A2I2FLC0_9EURO (DNA-directed DNA polymerase theta n=3 Tax=Aspergillus TaxID=5052 RepID=A0A2I2FLC0_9EURO) HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12 Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query: 25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLP 228
RR+GL AL + LG+ +YPWQASCL E G++EG R+L+Y APT GGK++VA++L+L R++ P
Sbjct: 128 RRYGLSPALVANF-AALGVSSIYPWQASCLLEPGLLEGRRHLVYTAPTGGGKSLVADVLMLKRIIENP 194
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A8C5S019_LATLA (DEAD domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5S019_LATLA) HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12 Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query: 19 IFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVM 219
+ WGL A+ Y G LGI ++ WQA CL + V+EG RNL+Y APTS GKT+VAELL+L RV+
Sbjct: 50 LLANWGLPKAVLEKYHG-LGIVRMFQWQAECLMADQVLEG-RNLVYSAPTSAGKTLVAELLILKRVL 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20727.5947.1 >prot_H-elongata_contig20727.5947.1 ID=prot_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLback to top mRNA from alignment at H-elongata_contig20727:4501..5201- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20727.5947.1 ID=mRNA_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=701bp|location=Sequence derived from alignment at H-elongata_contig20727:4501..5201- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20727:4501..5201- >mRNA_H-elongata_contig20727.5947.1 ID=mRNA_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig20727:4501..5201- (Himanthalia elongata Himel1 dioecious)back to top |