mRNA_H-elongata_contig20727.5947.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20727.5947.1
Unique NamemRNA_H-elongata_contig20727.5947.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 3.000e-48
Identity = 98/159 (61.64%), Postives = 111/159 (69.81%), Query Frame = 1
Query:    1 PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEP------VVRRVVFVLPFISMVTEKVKHLQRVVAPYNRGRPRRQRIKAR 459
            PTSLE +FRRWGLD ALR Y+   LGIEHLYPWQA CL   GV EG ++LLYFAPTSGGKTMVAELLLLLRVM LP +     G  +G  R      A VVES    TG P        RR + VLPF+SMVTEK KHLQ +VAPYNRGRP+++RI+ R
Sbjct:   16 PTSLEYLFRRWGLDPALRHYHGRSLGIEHLYPWQARCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLACSTGEGEDEG--RAXXXXXAAVVESGAV-TGLPRKDQTATTRRAIIVLPFVSMVTEKAKHLQSIVAPYNRGRPKKKRIQVR 171          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 4.300e-46
Identity = 96/152 (63.16%), Postives = 111/152 (73.03%), Query Frame = 1
Query:    1 PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVVAPYNRGRPRRQRIKA 456
            PTSLE +FRRWGLD ALR ++   LGIEHLYPWQASCL   GV EG ++LLYFAPTSGGKTMVAELLLLLRVM LP +  R  G  +            VVES    TG  ++R+VV  LPF+SMVTEK KHLQ +VAPYNRGRP++QRI+A
Sbjct:    6 PTSLEYLFRRWGLDPALRHHHGRSLGIEHLYPWQASCLALPGVAEGRQDLLYFAPTSGGKTMVAELLLLLRVMGLPLA--RSTGEGEDXXXXXXXXXXAVVESGAI-TG--LLRKVV--LPFVSMVTEKAKHLQSIVAPYNRGRPKKQRIQA 150          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A4P9W377_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W377_9FUNG)

HSP 1 Score: 82.0 bits (201), Expect = 3.260e-15
Identity = 51/135 (37.78%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   19 IFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVVAPYN 423
            +F  +G+   +   Y     I+ LY WQA CL  +GV+EGTRNLLY APTS GKTMVAELL+LL+V                            +++S         ++ + +LPFIS+V+EK K+LQ++ A  N
Sbjct:    3 LFAEYGIPPQVAEEYIAN-NIKWLYEWQARCLKSKGVLEGTRNLLYSAPTSAGKTMVAELLMLLKV----------------------------IKTS---------KKAIMILPFISIVSEKTKYLQKMFASEN 99          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A1B6EPC6_9HEMI (DEAD domain-containing protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EPC6_9HEMI)

HSP 1 Score: 73.2 bits (178), Expect = 1.340e-13
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
            R WGL + +   Y    GIE+++PWQ  CLT +GV+ G RNL+Y APTS GKTMVAE+L +  V+      ER+                               ++V+ +LPFIS+V EK+ + Q ++
Sbjct:   19 RSWGLPTTILEKY-AAKGIENMFPWQVECLTSDGVLAG-RNLVYSAPTSAGKTMVAEMLTIQTVL------ERK-------------------------------KKVIIILPFISVVREKMLYFQNLL 108          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A167ZTY2_9PEZI (DNA-directed DNA polymerase n=1 Tax=Sporothrix insectorum RCEF 264 TaxID=1081102 RepID=A0A167ZTY2_9PEZI)

HSP 1 Score: 76.3 bits (186), Expect = 3.530e-13
Identity = 52/119 (43.70%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   73 LGIEHLYPWQASCLTE-EGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGR-RQGGPRVEQPKGAMVVESSTCDTGEPVVRR----VVFVLPFISMVTEKVKHLQRVV 411
            LGI  +YPWQ  CLT   G++EGTRNL+Y APT GGK++VA++L+L  V+         CG   +GG   E+ +GA      TC       RR     + VLPF+++V EKV+ L+RVV
Sbjct:  173 LGIRTIYPWQKQCLTGGSGLLEGTRNLVYAAPTGGGKSLVADVLMLRHVLGC-------CGDGARGGHTQEEEEGAG--HGHTCLDHRWRRRRQRPKALLVLPFVALVQEKVRWLRRVV 282          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A3N4LBK3_9PEZI (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Terfezia boudieri ATCC MYA-4762 TaxID=1051890 RepID=A0A3N4LBK3_9PEZI)

HSP 1 Score: 75.1 bits (183), Expect = 8.720e-13
Identity = 49/130 (37.69%), Postives = 70/130 (53.85%), Query Frame = 1
Query:   28 RWGLDSALRRYYDG--GLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
            +WGLDS    + +G    GIE +Y WQA CL+  G++EG +NL+Y APTS GK++VAE+L++ RVM                   E    A+VV                  LP++++VTEKVK L++VV
Sbjct:   91 KWGLDS---NFVEGLKNCGIEVMYEWQAECLSMPGLLEGEKNLVYTAPTSAGKSLVAEILMIKRVM-------------------ETRMKAIVV------------------LPYVAIVTEKVKFLKKVV 180          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A1B6JHT8_9HEMI (Helicase ATP-binding domain-containing protein (Fragment) n=2 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6JHT8_9HEMI)

HSP 1 Score: 73.2 bits (178), Expect = 1.100e-12
Identity = 46/129 (35.66%), Postives = 67/129 (51.94%), Query Frame = 1
Query:   25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVV 411
            R WGL + +   Y    GIE+++PWQ  CLT +GV+ G RNL+Y APTS GKTMVAE+L +  V+      ER+                               ++V+ +LPFIS+V EK+ + Q ++
Sbjct:   21 RSWGLPTTILEKY-AAKGIENMFPWQVECLTSDGVLAG-RNLVYSAPTSAGKTMVAEILTIQTVL------ERK-------------------------------KKVIIILPFISVVREKMLYFQNLL 110          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A0E9NPB0_SAICN (Uncharacterized protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NPB0_SAICN)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 51/141 (36.17%), Postives = 70/141 (49.65%), Query Frame = 1
Query:   28 RWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMVVESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQ-------RVVAPYNRG 429
            R+GL SAL   Y    GI  LY WQA CL   G+++G+R+++Y APTSGGKTMV+E+L+L RV    +                                     + + VLPF+S+VTEK +HL+       +VVA Y  G
Sbjct:  144 RYGLQSALVHAY-ARKGIRTLYDWQAKCLDLPGLLDGSRSVVYTAPTSGGKTMVSEILMLKRVFETKS-------------------------------------KAILVLPFVSIVTEKTRHLKSLLEGTDKVVAGYFGG 246          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A2I2FLC0_9EURO (DNA-directed DNA polymerase theta n=3 Tax=Aspergillus TaxID=5052 RepID=A0A2I2FLC0_9EURO)

HSP 1 Score: 74.7 bits (182), Expect = 1.200e-12
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   25 RRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVMVLP 228
            RR+GL  AL   +   LG+  +YPWQASCL E G++EG R+L+Y APT GGK++VA++L+L R++  P
Sbjct:  128 RRYGLSPALVANF-AALGVSSIYPWQASCLLEPGLLEGRRHLVYTAPTGGGKSLVADVLMLKRIIENP 194          
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Match: A0A8C5S019_LATLA (DEAD domain-containing protein n=1 Tax=Laticauda laticaudata TaxID=8630 RepID=A0A8C5S019_LATLA)

HSP 1 Score: 69.7 bits (169), Expect = 2.410e-12
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   19 IFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNLLYFAPTSGGKTMVAELLLLLRVM 219
            +   WGL  A+   Y G LGI  ++ WQA CL  + V+EG RNL+Y APTS GKT+VAELL+L RV+
Sbjct:   50 LLANWGLPKAVLEKYHG-LGIVRMFQWQAECLMADQVLEG-RNLVYSAPTSAGKTLVAELLILKRVL 114          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20727.5947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM15_ECTSI3.000e-4861.64DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE4.300e-4663.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4P9W377_9FUNG3.260e-1537.78P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1B6EPC6_9HEMI1.340e-1335.66DEAD domain-containing protein (Fragment) n=1 Tax=... [more]
A0A167ZTY2_9PEZI3.530e-1343.70DNA-directed DNA polymerase n=1 Tax=Sporothrix ins... [more]
A0A3N4LBK3_9PEZI8.720e-1337.69P-loop containing nucleoside triphosphate hydrolas... [more]
A0A1B6JHT8_9HEMI1.100e-1235.66Helicase ATP-binding domain-containing protein (Fr... [more]
A0A0E9NPB0_SAICN1.200e-1236.17Uncharacterized protein n=2 Tax=Saitoella complica... [more]
A0A2I2FLC0_9EURO1.200e-1251.47DNA-directed DNA polymerase theta n=3 Tax=Aspergil... [more]
A0A8C5S019_LATLA2.410e-1253.73DEAD domain-containing protein n=1 Tax=Laticauda l... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20727contigH-elongata_contig20727:4501..5201 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score178.7
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D7FM15
KEGG koko:K02349
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006287,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.4437022-CDS-H-elongata_contig20727:4500..46521622930158.4437022-CDS-H-elongata_contig20727:4500..4652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 4501..4652 -
1691679303.427475-CDS-H-elongata_contig20727:4500..46521691679303.427475-CDS-H-elongata_contig20727:4500..4652Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 4501..4652 -
1622930158.4614663-CDS-H-elongata_contig20727:4879..52011622930158.4614663-CDS-H-elongata_contig20727:4879..5201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 4880..5201 -
1691679303.4411037-CDS-H-elongata_contig20727:4879..52011691679303.4411037-CDS-H-elongata_contig20727:4879..5201Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 4880..5201 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20727.5947.1prot_H-elongata_contig20727.5947.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20727 4501..5201 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20727.5947.1

>prot_H-elongata_contig20727.5947.1 ID=prot_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
PTSLEDIFRRWGLDSALRRYYDGGLGIEHLYPWQASCLTEEGVVEGTRNL
LYFAPTSGGKTMVAELLLLLRVMVLPASPERECGRRQGGPRVEQPKGAMV
VESSTCDTGEPVVRRVVFVLPFISMVTEKVKHLQRVVAPYNRGRPRRQRI
KARERIA*
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mRNA from alignment at H-elongata_contig20727:4501..5201-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20727.5947.1 ID=mRNA_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=701bp|location=Sequence derived from alignment at H-elongata_contig20727:4501..5201- (Himanthalia elongata Himel1 dioecious)
CCGACTTCTCTTGAAGATATTTTCCGTCGCTGGGGCCTGGACTCCGCGCT CCGTCGCTACTATGATGGAGGCCTGGGCATCGAACATCTGTACCCGTGGC AAGCCAGTTGCCTTACCGAAGAGGGCGTCGTTGAAGGCACCCGAAACCTA CTGTACTTCGCGCCTACCTCGGGGGGGAAGACGATGGTGGCTGAGCTTCT GCTGCTACTGAGAGTTATGGTCCTGCCCGCGTCTCCCGAGCGAGAGTGTG GTCGTCGACAAGGAGGACCCAGAGTGGAGCAGCCGAAAGGTGCGATGGTA GTCGAATCTTCAACTTGTGACAGTTGGGTATTTTTTTTTGTTCCGAGACT CTGCTTGGCCTGGCTTGGCCGGAGCAGTCAAATGTTTTTGGTAGCAGGGA TAATGTAATGTATAGCTCTGCACACGCTGGCCGCTTCAAAATACCTTCAA AATGGTGAGACCGCGTGGATCATATTCGTGGCTGGTTACGATGGCCGCGC AGTCATCCGACTTTCCCGCTGTGGTCGCTCCACATCTGCTCTTGAACAGC AGGGGAGCCAGTTGTGCGCAGGGTCGTGTTCGTGCTGCCGTTCATCAGCA TGGTTACCGAAAAGGTCAAGCACCTACAGAGGGTTGTGGCGCCCTACAAC CGCGGGAGACCGAGGCGGCAGAGGATCAAGGCGAGAGAAAGAATTGCGTA G
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Coding sequence (CDS) from alignment at H-elongata_contig20727:4501..5201-

>mRNA_H-elongata_contig20727.5947.1 ID=mRNA_H-elongata_contig20727.5947.1|Name=mRNA_H-elongata_contig20727.5947.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig20727:4501..5201- (Himanthalia elongata Himel1 dioecious)
CCGACTTCTCTTGAAGATATTTTCCGTCGCTGGGGCCTGGACTCCGCGCT
CCGTCGCTACTATGATGGAGGCCTGGGCATCGAACATCTGTACCCGTGGC
AAGCCAGTTGCCTTACCGAAGAGGGCGTCGTTGAAGGCACCCGAAACCTA
CTGTACTTCGCGCCTACCTCGGGGGGGAAGACGATGGTGGCTGAGCTTCT
GCTGCTACTGAGAGTTATGGTCCTGCCCGCGTCTCCCGAGCGAGAGTGTG
GTCGTCGACAAGGAGGACCCAGAGTGGAGCAGCCGAAAGGTGCGATGGTA
GTCGAATCTTCAACTTGTGACACCGACTTCTCTTGAAGATATTTTCCGTC
GCTGGGGCCTGGACTCCGCGCTCCGTCGCTACTATGATGGAGGCCTGGGC
ATCGAACATCTGTACCCGTGGCAAGCCAGTTGCCTTACCGAAGAGGGCGT
CGTTGAAGGCACCCGAAACCTACTGTACTTCGCGCCTACCTCGGGGGGGA
AGACGATGGTGGCTGAGCTTCTGCTGCTACTGAGAGTTATGGTCCTGCCC
GCGTCTCCCGAGCGAGAGTGTGGTCGTCGACAAGGAGGACCCAGAGTGGA
GCAGCCGAAAGGTGCGATGGTAGTCGAATCTTCAACTTGTGACACAGGGG
AGCCAGTTGTGCGCAGGGTCGTGTTCGTGCTGCCGTTCATCAGCATGGTT
ACCGAAAAGGTCAAGCACCTACAGAGGGTTGTGGCGCCCTACAACCGCGG
GAGACCGAGGCGGCAGAGGATCAAGGCGAGAGAAAGAATTGCGTAGCAGG
GGAGCCAGTTGTGCGCAGGGTCGTGTTCGTGCTGCCGTTCATCAGCATGG
TTACCGAAAAGGTCAAGCACCTACAGAGGGTTGTGGCGCCCTACAACCGC
GGGAGACCGAGGCGGCAGAGGATCAAGGCGAGAGAAAGAATTGCGTAG
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