mRNA_H-elongata_contig20727.5946.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20727.5946.1
Unique NamemRNA_H-elongata_contig20727.5946.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 5.850e-101
Identity = 185/303 (61.06%), Postives = 214/303 (70.63%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILRNLNAAGGGLSAT 909
            AL+G+KGG   ++  Q+AVCTIEKAN L+NRMAAA +LHE+SCLV+DELHMIG+GGRGQ L+     V    R  +  P     E +++D         ++ TQI+GMSATLSNG ELA WLGATLHVSD+RP+PLDERV+LGM +YDK G VVR F  PA+P++DPDHVVTLCRESC A DQVIIFCSTKQFCHNCA+K                                     ETIP GVAFHHAGLADTER+AIE AFR+G L VLAATSTLGAGVNLPAGRVILRN+NA GGGLSAT
Sbjct:  172 ALHGAKGGD--LKQAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKVVRANRGAAVAPAVPQAE-TDADVGSNQPAPPRQHTQIVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERVVLGMHVYDKEGFVVREFAAPAHPQSDPDHVVTLCRESCRAGDQVIIFCSTKQFCHNCALK-------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSAT 434          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.130e-65
Identity = 148/303 (48.84%), Postives = 171/303 (56.44%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILRNLNAAGGGLSAT 909
            AL+G+KGG   ++  Q+AVCTIEKAN L+NRMAAA +LHE+SCLV+DELHMIG+G RG   +              P P+                   ++ TQI+GMSATLSNG ELA WLGATLHVSD+RP+PLDER++                                          VIIFCSTKQFCHNCA+K                                     ETIP GVAFHHAGLADTER+AIE AFR+G L VLAATSTLGAGVNLPAGRVILRN+NA GGGLSAT
Sbjct:  191 ALHGAKGGD--LKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGRRGVGSN-------------KPAPL-------------------RQHTQIVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERIV------------------------------------------VIIFCSTKQFCHNCALK-------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGALDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSAT 380          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A060Q4U7_SOLME (DNA polymerase theta-like protein n=1 Tax=Solanum melongena TaxID=4111 RepID=A0A060Q4U7_SOLME)

HSP 1 Score: 201 bits (512), Expect = 2.430e-56
Identity = 128/302 (42.38%), Postives = 186/302 (61.59%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSES--DAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNL-----GVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            + YG++GGG+  + T VAVCTIEKAN+LINR+    +L E+  +V+DELHM+G+  RG  L+     +   SG+G T S    G+T  +S +  D AG +        QI+GMSATL N   +A WL A L+ +++RPVPL+E + +G  +Y++   +VR   + A+    DPDH+V LC E       V+IFCS+++ C + A    K+L     G  +S   +++ ++ +  L +    G+DPIL+ET+P GVA+HHAGL   ER  +E  +R G++RVL ATSTL AGVNLPA RVI R
Sbjct:  138 SYYGNQGGGSLPKDTAVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQNRGYLLELMLTKLRYASGEGNTESS--SGETSGMSSAKVDPAGSL--------QIVGMSATLPNVTAVADWLQAALYQTEFRPVPLEEYIKVGNAIYNQKLDIVRIISKTADLGGKDPDHIVELCNEVVQEGHSVLIFCSSRKGCESTARHVAKHLKRFSLGQLSSHNESIDITSAIDALRRSPA-GLDPILEETLPAGVAYHHAGLTVEERETVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 428          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: UPI0018A0A7B1 (DNA polymerase theta isoform X1 n=2 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI0018A0A7B1)

HSP 1 Score: 204 bits (520), Expect = 9.080e-56
Identity = 125/299 (41.81%), Postives = 170/299 (56.86%), Query Frame = 1
Query:   10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCA---------IKATKNLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            GS     G +   VAVCTIEKAN+LINR+     +  +  +V+DELHM+G+ GRG  L+     +                   + +  G ++       QIIGMSATL N   LA+WLGA L+ +DYRPVPL E + +G  +YDKS  V+R F    + + D DH+V+LC E+      V++FC +K +C   A         I+ T   G    + V ++R  L+  +A  +    G+DPILQ T+P GVAFHHAGL   ER  +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct:  392 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDNMALLGMVVVDELHMVGDSGRGYLLELLLTKIR--------------YIAQKQNTTGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLHEHLKVGCNIYDKSLSVIRQFTPALHVKGDDDHIVSLCYETVREGRSVLLFCPSKNWCEKLADSIAREFYNIRHTDRQGEAEPQPVCLDREGLVDVVAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMVRVLAATSTLSSGVNLPARRVIIR 672          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A833RB11_9POAL (Helicase and polymerase-containing protein TEBICHI n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RB11_9POAL)

HSP 1 Score: 204 bits (518), Expect = 1.610e-55
Identity = 125/301 (41.53%), Postives = 178/301 (59.14%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQT----QIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMT-----QLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            + YG++GGG+  + T VAVCTIEKAN+L+NR+    +L E+  +V+DELHM+G+  RG  L+     +      G PP         E+ ++GEV+   K  T    QI+GMSAT+ N   +A WL A L+ +D+RPVPL+E + +G  +YDK+   VR   + A     DPDH+V LC E       V++FCS+++ C + A   +K L   ++R+     S +          K    G+DP+L+ET+P GVA+HHAGL   ER  +E  +R G++RVL ATSTL AGVNLPA RVI R
Sbjct:  390 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRLLEEGRLSELGIIVIDELHMVGDPHRGYLLELMLTKLRYAAGEGKPP---------EALSSGEVSSGAKNDTTQGLQIVGMSATMPNVAAVADWLQAALYQTDFRPVPLEEYIKVGNTIYDKNMNAVRVIPKRAELASKDPDHIVELCNEVVEQGHSVLLFCSSRKGCESTARHVSKFLVKFSARSGEQNGSDISDIGTAIDALKRCPAGLDPVLEETLPCGVAYHHAGLTMEERDIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 681          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A6J2PNM2_COTGO (DNA-directed DNA polymerase n=2 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2PNM2_COTGO)

HSP 1 Score: 204 bits (518), Expect = 1.680e-55
Identity = 125/299 (41.81%), Postives = 170/299 (56.86%), Query Frame = 1
Query:   10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCA---------IKATKNLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            GS     G +   VAVCTIEKAN+LINR+     L  +  +V+DELHM+G+ GRG  L+     +                   + +  G ++       QIIGMSATL N   LA+WLGA L+ +DYRPVPL E + +G  +YDKS  VVR F    + + D DH+V+LC E+      V++FC +K +C   A         ++ T   G    + V ++R  L+  +A  +    G+DP+LQ T+P GVAFHHAGL   ER  +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct:  404 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDNLGLLGMVVVDELHMVGDSGRGYLLELLLTKIR--------------FIAQKQNTTGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLLEHLKVGRNIYDKSLSVVRQFTPAFHIKGDDDHIVSLCYETVSEGRSVLLFCPSKNWCEKLADSIAREFYNLRHTDRQGEAEPQPVCLDRDGLVDVVAQLRRTPAGLDPVLQRTVPWGVAFHHAGLTFDERDVLEGAFRQGVVRVLAATSTLSSGVNLPARRVIIR 684          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: UPI0010FB8FC1 (LOW QUALITY PROTEIN: DNA polymerase theta-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0010FB8FC1)

HSP 1 Score: 203 bits (517), Expect = 2.280e-55
Identity = 124/299 (41.47%), Postives = 169/299 (56.52%), Query Frame = 1
Query:   10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNL---------GVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            GS     G +   VAVCTIEKAN+LINR+     L  +  +V+DELHM+G+ GRG  L+     +                   + + +G ++       QIIGMSATL N   LA+WLGA L+ +DYRPVPL E + +G  +YD+S  VVR F    + + D DH+V+LC E+      V++FC +K +C        +           G  A   V++++  L+  +A  +    G+DPILQ T+P GVAFHHAGL   ER  +E AFR G+LRVLAATSTL +GVNLPA RVI+R
Sbjct:  390 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDSLGLLGVVVVDELHMVGDSGRGYLLELLLTKIR--------------FVAQKQNTSGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLQEHLKVGCNIYDRSLSVVRQFTPVLHVKGDGDHIVSLCYETVRERRSVLLFCPSKNWCEKLVDSIAREFYNLRHMDRQGEAAPEPVSLDQEGLVDVIAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMLRVLAATSTLSSGVNLPARRVIIR 670          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A1J3JBY5_NOCCA (Helicase and polymerase-containing protein TEBICHI (Fragment) n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JBY5_NOCCA)

HSP 1 Score: 199 bits (505), Expect = 4.030e-55
Identity = 122/300 (40.67%), Postives = 179/300 (59.67%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPE-TDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATK-----NLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            + YG +GGG   +GT VAVCTIEKAN+LINR+    +L E+  +V+DELHM+G+  RG  L+     +   +G+G + S           ++D A  +        QI+GMSAT+ N G +A WL A L+ +++RPVPL+E + +G  +Y+K   VVR   + A+    DPDH++ LC E     + V+IFCS+++ C + A   +K      + V    +  M+  + +  L +    G+DP+L+ET+P GVA+HHAGL   ER  +E  +R G++RVL ATSTL AGVNLPA RVI R
Sbjct:  313 SYYGIQGGGTLPKGTAVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGGSESSXXXXXXXXXXKADPAHGL--------QIVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGNTIYNKKMEVVRTIPKAADMGGKDPDHIIELCNEIVQEGNSVLIFCSSRKGCESTARHISKLIKKVPIDVDGENSEYMDIRSAIDALRRSPS-GVDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 603          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A7J6FVE1_CANSA (Uncharacterized protein (Fragment) n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FVE1_CANSA)

HSP 1 Score: 202 bits (514), Expect = 5.620e-55
Identity = 124/302 (41.06%), Postives = 178/302 (58.94%), Query Frame = 1
Query:    1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERS-------TLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            + YG++GGG   + T VAVCTIEKAN+L+NR+    +L EI  +V+DELHM+G+  RG  L+     +   +G+G +G            + D A  +        QI+GMSAT+ N G +A WL A L+ +D+RPVPL+E + +G  +Y+K+  +VR   + A+    DPDHVV LC E       V+IFCS+++ C + A   +K L    S  V+ + S       T      +   +G+DP+L+ET+P G+A+HHAGL   ER  +E  +R G++RVL ATSTL AGVNLPA RVI R
Sbjct:  604 SYYGNQGGGTLPKDTSVAVCTIEKANSLLNRLLEEGRLSEIGIIVIDELHMVGDRNRGYLLELMLTKLRYAAGEGNSGGXXXXXXXXXXXKQDPAHGM--------QIVGMSATMPNVGAVADWLQAALYQTDFRPVPLEEYIKVGNTIYNKNMDIVRTIFKAADLGGKDPDHVVELCNEVVQEGHSVLIFCSSRKGCESTAKHISKFL---RSSKVSSQNSDAEYADITSAIDALRRCPVGLDPVLEETLPFGIAYHHAGLTVEEREVVETCYRKGLIRVLTATSTLAAGVNLPARRVIFR 894          
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A667YA76_9TELE (DNA-directed DNA polymerase n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YA76_9TELE)

HSP 1 Score: 202 bits (513), Expect = 7.540e-55
Identity = 127/297 (42.76%), Postives = 168/297 (56.57%), Query Frame = 1
Query:   10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV----SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATK---NLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
            GS     G     VAVCTIEKAN+LINR+     +  +  +V+DELHM+G+ GRG  L+     +         TGS       + LSES              Q++GMSATL N   LA WL A L+ +DYRPVPL E + +G  +YD S  +VR F      + D DH+V+LC E+      V++FC +K +C   A    +   NL   A +AV +++  L   +A  +    G+DPILQ T+P GVAFHHAGL   ER  +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct:  211 GSTSAAGGFTALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTTGS-------VSLSES-------------VQVVGMSATLPNLSLLAGWLDAELYQTDYRPVPLQEHLKVGNNIYDSSLSLVRQFTPALQVKGDDDHIVSLCYETVSEGHSVLLFCPSKNWCEKLADSIAREFYNLRHTAPQAVGLDQEGLKDVIAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMIRVLAATSTLSSGVNLPARRVIIR 487          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM15_ECTSI5.850e-10161.06DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE1.130e-6548.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A060Q4U7_SOLME2.430e-5642.38DNA polymerase theta-like protein n=1 Tax=Solanum ... [more]
UPI0018A0A7B19.080e-5641.81DNA polymerase theta isoform X1 n=2 Tax=Sebastes u... [more]
A0A833RB11_9POAL1.610e-5541.53Helicase and polymerase-containing protein TEBICHI... [more]
A0A6J2PNM2_COTGO1.680e-5541.81DNA-directed DNA polymerase n=2 Tax=Cottoperca gob... [more]
UPI0010FB8FC12.280e-5541.47LOW QUALITY PROTEIN: DNA polymerase theta-like n=1... [more]
A0A1J3JBY5_NOCCA4.030e-5540.67Helicase and polymerase-containing protein TEBICHI... [more]
A0A7J6FVE1_CANSA5.620e-5541.06Uncharacterized protein (Fragment) n=3 Tax=Cannabi... [more]
A0A667YA76_9TELE7.540e-5542.76DNA-directed DNA polymerase n=1 Tax=Myripristis mu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20727contigH-elongata_contig20727:98..4039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score338.6
Seed ortholog evalue3.1e-90
Seed eggNOG ortholog2880.D7FM15
KEGG koko:K02349
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006287,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons8
Model size909
Cds size909
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20727.5946.1prot_H-elongata_contig20727.5946.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20727 98..4039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930158.2605376-CDS-H-elongata_contig20727:97..2951622930158.2605376-CDS-H-elongata_contig20727:97..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 98..295 -
1691679303.316073-CDS-H-elongata_contig20727:97..2951691679303.316073-CDS-H-elongata_contig20727:97..295Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 98..295 -
1622930158.278807-CDS-H-elongata_contig20727:677..7841622930158.278807-CDS-H-elongata_contig20727:677..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 678..784 -
1691679303.325211-CDS-H-elongata_contig20727:677..7841691679303.325211-CDS-H-elongata_contig20727:677..784Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 678..784 -
1622930158.3113086-CDS-H-elongata_contig20727:1223..13031622930158.3113086-CDS-H-elongata_contig20727:1223..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 1224..1303 -
1691679303.3331158-CDS-H-elongata_contig20727:1223..13031691679303.3331158-CDS-H-elongata_contig20727:1223..1303Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 1224..1303 -
1622930158.3524861-CDS-H-elongata_contig20727:1813..19141622930158.3524861-CDS-H-elongata_contig20727:1813..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 1814..1914 -
1691679303.354408-CDS-H-elongata_contig20727:1813..19141691679303.354408-CDS-H-elongata_contig20727:1813..1914Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 1814..1914 -
1622930158.367015-CDS-H-elongata_contig20727:2465..25761622930158.367015-CDS-H-elongata_contig20727:2465..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 2466..2576 -
1691679303.3751252-CDS-H-elongata_contig20727:2465..25761691679303.3751252-CDS-H-elongata_contig20727:2465..2576Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 2466..2576 -
1622930158.3822064-CDS-H-elongata_contig20727:3011..31381622930158.3822064-CDS-H-elongata_contig20727:3011..3138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3012..3138 -
1691679303.3946135-CDS-H-elongata_contig20727:3011..31381691679303.3946135-CDS-H-elongata_contig20727:3011..3138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3012..3138 -
1622930158.3930283-CDS-H-elongata_contig20727:3624..37011622930158.3930283-CDS-H-elongata_contig20727:3624..3701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3625..3701 -
1691679303.4061265-CDS-H-elongata_contig20727:3624..37011691679303.4061265-CDS-H-elongata_contig20727:3624..3701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3625..3701 -
1622930158.404994-CDS-H-elongata_contig20727:3931..40391622930158.404994-CDS-H-elongata_contig20727:3931..4039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3932..4039 -
1691679303.4159179-CDS-H-elongata_contig20727:3931..40391691679303.4159179-CDS-H-elongata_contig20727:3931..4039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20727 3932..4039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20727.5946.1

>prot_H-elongata_contig20727.5946.1 ID=prot_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp
ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELH
MIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQK
KQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKS
GVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIK
ATKNLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAG
LADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILRNLNAAGGGL
SAT
back to top

mRNA from alignment at H-elongata_contig20727:98..4039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20727.5946.1 ID=mRNA_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3942bp|location=Sequence derived from alignment at H-elongata_contig20727:98..4039- (Himanthalia elongata Himel1 dioecious)
GCTCTGTATGGTTCCAAAGGCGGCGGAAACGGAATCCGTGGCACGCAGGT CGCAGTCTGCACGATCGAGAAGGCCAACGCCCTGATCAACAGAATGGCGG CCGCAAGCGTGAGAGGGGAAGTTATTCGTGCGTGGCCTGCGCTTCATGGC GCGGAGGCCTTTCGGAGCGTCACAATAACACCCCCGCTGGTAGCGTTTAA ATCTACGAAATGTACTCGGGTATACCCGCAGCAAAAAAGTAAATCCAGCA GCCGAACCGCGAGAAGATTGTCGTATCCGGTTTTATTTTGCTTTCGCTCC TTGTTTTTCCCCGCGGTGTGTGTGGTCGTCGATACCAGAAATTGCATGAG ATATCTTGTCTTGTGCTCGACGAGCTGCACATGATCGGGGAGGGCGGCAG GGGCCAGACGCTGGAGTTACTGCTCAGCAAGGCAAGATCTTCGGATTAAA CATACAATATATATATATATATATGCATAAGATGTGTATGTGAGACACGA GACAGCGAAGAGGCAAAAATGCGTGTCACCCTGAAAGGAAAGGAAGTTCC GCGAAGAAGGGTGGCCGTGGCGCCACGGTTGCCATTTCCGCGATTCCAGC TCTCGCATCCGTAATAGCGCAATCGTCGCGAAAGCTGAGAGACTTTCGTT GTGGTTGTGTGCGCATGCTTTCGTGTCCACCGAGAGCGACACAACCGACA TCTGGCGGAGCCGTATGTCGTTTTGGGGGAACGGCAACTGTGGTGCGCAT CAGAGCCACCCGCCCTTGTTATCATTCTGAGGCGTATCACCCTCCCGCGC CACGCTACGCCCGATTTTTTTTTATCGTTTCTGCAGGTGGTGCAAGCCAA CAGGACTGCTCACGACAGACCACAAGGAATTGCTAAAATATCAGCTGGTA GTCCTGCTGCGCTCCCGGTCTCGGGAGACGGACGCACGGGGTCTCCGCCG CCCATCGGTGACACCATCGAACTGTCTGAAAGTGATGCGGCGGGCGAAGT GACGAGAGCACAGAAAAAGCAAACGCAGGTACCGCACTTGGGGAGTGGGC TCTGTTACGCCTTGCCGCGTAAAGCTGAGAGTTGAAAGCGGTTGGTGGAG TGGTATGATTTACCAATTGACTCCTGAACGCCCTATCTGGTATATCGATA AAGTGCAAAAAAGCAAGACGCGAACGCTACCTGAGCGTTTATTTCGGTTG CCTCCATCCTTCCAAACCCCGGGGCTTTTTTTTTCATTTCGGCACGAAAC CCGCGCGGTTCGGTAATATTTGATCGACGCTGACCGTCGGGGGGGGGGGC CCGCTTGTCTCTCGGAAACCATGCCGCCTTGGTGGAGTCCGCGCGAAATC GCCACGGATCCTTGGCTCTTTTTTTGAGCTTGCGAAGCCCACTGCTGCTG TCCCTTGTCTTTATATGGTAACATCGGCTTGTCCGGAAAATGGATGATTG GAGGGGATGGAAGATAATTGGCATGAGCGCGACTCTGTCCAACGGGGGTG AGTTGGCCGCATGGCTCGGAGCTACTCTCCATGTGTCGGACTATCGGCCT GTTCCTCTAGACGAGAGGGTTCTGGTGAGACTAGAGCGCGCGCACCCGCA AATCTTATGTGAAGCTTTACCGAGGGAGCACCTTGTATAGTAAGAGACAG GGGGAGCATGAAGTTGACCGCGGGAAATGCTTTCTTCGGTTTAGGTGCGG CGCAAGCAGGCCAGAGAGCAGAGCAAAGCCGTCTAGACAGCGATGCGGCG ATTGGCGATTCGTTGCGGCTTGATTAGGTTTGGTCTGGGGTTTTTTTTGT TCGAGTTGGTTTGCTTTGGTTTGCGTCCGTTCGATTTGACTCAGTTCGGT TCGGTTCGGTTTGGCTGAAATCTTGCGCTCTCGTTTCTGTTGTGAAAAGA AAGCCACCCAGAGCTACTGTGCGTAGCTGGATGGATGGAGCCCTGACTTT ATATTTTACCGGCTTGCGAAAAGCAATTAACGTAAGCCCCCCAGTGTGTT TATCAGATAATCACACACACACACACATCCCCCTTGTCCGCTTACCCCCC TTCGTGCTCTGCCTCGACGCCACTAAATTTATCTTCCCACGGTCACCGTT CTTGATTGGGTTTTTTTTCCTTTAGCTGGGCATGCGCATGTACGATAAGT CCGGGGTCGTCGTCAGAAATTTCTTGGAACCCGCTAATCCGGAGACCGAC CCGGACCACGTCGTAACGCTATGCAGGTAGGCTATTAGAGGTCTGGAGAG TGAGCAGAGGGTTCCGTAGCTGGGTCCCAGGGTTTGAAGGAAGAGAAGGC GTTGAATCGTCCTTCCGGGGTTGGGGTCACTTAGCATTTGAGTGTCCGGT AAGCAGGGGAGGAGGGATTACTACCTGTTACTGGTACGGAGTGTAGGGGG AGGATCACCGAAGCGATTGAGGTACTGCTTTGTTGTTGTTGTTTTTATTC GCGGAGTTCGGGGGCGTATCCCGTGCTGTCGAATGCTCTCGGTAGAAGAG GGTTGCCATTTGATTTTGATGTGTGCTGATTTTGGTTGCGAACATTTCGA TCGTCCGTTCTCTTTTCGTGTTTCGGATGTTGTGTGCGTTGATGTGTTGT CTAAAAGAGAGTACAGAAGAAGAACGACAGCATGCACCACTCGCTGTATT TCATTCCAAGCGCTCCCCCTCCCCCCCGCGGTCGTTATGTTTGGGTGTCC GATTGGGTGGGTGGGTGTGGGTGTTACGGAGAACAGGGAGAGCTGTCTCG CCCATGACCAAGTGATCATTTTCTGCTCGACGAAGCAGTTCTGCCACAAC TGCGCCATCAAGGCAAGTGTCTCCTCCGCCTAGAGCAACGTATGAAAAAC GGCGGTCGGCACGCGCGGCCTCTTGCGCGGCATCAGATCAGCTTCCGTCC CCATACTATTCCCCATACCCCCTCGCTTAGTTATGTCTCGGAAGGAAGTA GGCCCTCCGACCGACCGCTCACTAATAGTCTTGGTTTTCACGCCTTCCGT GGCCCCACCTCTACTCCGAGCTTGCTTGTGGAGTCACCACAGCCTCTTAC AATAATGCCTCCTTGTGTGTGGCCACCCCCTTGTAACCTCCCGTCGTGTC TTCCTGCTTTCTTTGCGTTTTACCTAGCCGGTCGCACATCATCATCATCA TCATCACCTCCCCCCTATCTCCTCCTTCCCTTCCTTTTTTGGTCTCACGA TCCTGATTCTTCCCGTCCTCGCAATCTTGTGGTGGAATTATATCCATGTA GGTAGCGAAGAATCTGGGGGTGCCCGCGTCGAGGGCAGTGGCCATGGAGC GCTCGACGTTAATGACGCAACTCGCGAAGGAAATGTGCATGGGGATCGAC CCCATCCTGCAGGTAGGAGCATCTGTCTTTTCCATGGTATATGGACGATG TCGATAGAATTGGGTGGAACGCGTATTTTATTTTATTTTGTTTCATTTTA CAGTATATTTTCTATATGACGCATACTGTAAAGGCTCGCGTTTGAGTTCC CTGGAGAAGAAAGAAAAAATGTTAACCGTATCTGTCTGTTCGTACGTCCA TCCATCCATCCGTAAGATATGAAGATATGGTCTCTGACGACAAATAAAAA ACACAGGTAGTTTTGGTGTGATCGTAATGTTTTCGTGGTTGGGAGTGGAT CCCGCTCGGCAACTTATCAAGCATCTTTCCGAGCATCCAGCACGTCGGAA AGACACGGTCGTCGCGTCGATGCCCCCCCACCCACCCCTTTCAGGAGACG ATTCCCCAAGGCGTGGCCTTTCACCACGCTGGCCTTGCCGACACCGAGCG GGCGGCGATCGAGGCGGCTTTCCGGGCGGGAATATTGAGAGTGCTCGCGG CGACCTCGACGCTTGGCGCTGGGGTAAACCTTCCCGCGGGGAGGGTTATC CTGCGGAACCTCAACGCTGCCGGAGGGGGGCTGAGTGCCACC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20727:98..4039-

>mRNA_H-elongata_contig20727.5946.1 ID=mRNA_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig20727:98..4039- (Himanthalia elongata Himel1 dioecious)
GCTCTGTATGGTTCCAAAGGCGGCGGAAACGGAATCCGTGGCACGCAGGT
CGCAGTCTGCACGATCGAGAAGGCCAACGCCCTGATCAACAGAATGGCGG
CCGCAAGCGCTCTGTATGGTTCCAAAGGCGGCGGAAACGGAATCCGTGGC
ACGCAGGTCGCAGTCTGCACGATCGAGAAGGCCAACGCCCTGATCAACAG
AATGGCGGCCGCAAGCAAATTGCATGAGATATCTTGTCTTGTGCTCGACG
AGCTGCACATGATCGGGGAGGGCGGCAGGGGCCAGACGCTGGAAAATTGC
ATGAGATATCTTGTCTTGTGCTCGACGAGCTGCACATGATCGGGGAGGGC
GGCAGGGGCCAGACGCTGGATCCTGCTGCGCTCCCGGTCTCGGGAGACGG
ACGCACGGGGTCTCCGCCGCCCATCGGTGACACCATCGAACTGTCTGAAA
GTGATGCGGCGGGCGAAGTGACGAGAGCACAGAAAAAGCAAACGCAGTCC
TGCTGCGCTCCCGGTCTCGGGAGACGGACGCACGGGGTCTCCGCCGCCCA
TCGGTGACACCATCGAACTGTCTGAAAGTGATGCGGCGGGCGAAGTGACG
AGAGCACAGAAAAAGCAAACGCAGATAATTGGCATGAGCGCGACTCTGTC
CAACGGGGGTGAGTTGGCCGCATGGCTCGGAGCTACTCTCCATGTGTCGG
ACTATCGGCCTGTTCCTCTAGACGAGAGGGTTCTGATAATTGGCATGAGC
GCGACTCTGTCCAACGGGGGTGAGTTGGCCGCATGGCTCGGAGCTACTCT
CCATGTGTCGGACTATCGGCCTGTTCCTCTAGACGAGAGGGTTCTGCTGG
GCATGCGCATGTACGATAAGTCCGGGGTCGTCGTCAGAAATTTCTTGGAA
CCCGCTAATCCGGAGACCGACCCGGACCACGTCGTAACGCTATGCAGCTG
GGCATGCGCATGTACGATAAGTCCGGGGTCGTCGTCAGAAATTTCTTGGA
ACCCGCTAATCCGGAGACCGACCCGGACCACGTCGTAACGCTATGCAGGG
AGAGCTGTCTCGCCCATGACCAAGTGATCATTTTCTGCTCGACGAAGCAG
TTCTGCCACAACTGCGCCATCAAGGCAAGGAGAGCTGTCTCGCCCATGAC
CAAGTGATCATTTTCTGCTCGACGAAGCAGTTCTGCCACAACTGCGCCAT
CAAGGCAACGAAGAATCTGGGGGTGCCCGCGTCGAGGGCAGTGGCCATGG
AGCGCTCGACGTTAATGACGCAACTCGCGAAGGAAATGTGCATGGGGATC
GACCCCATCCTGCAGCGAAGAATCTGGGGGTGCCCGCGTCGAGGGCAGTG
GCCATGGAGCGCTCGACGTTAATGACGCAACTCGCGAAGGAAATGTGCAT
GGGGATCGACCCCATCCTGCAGGAGACGATTCCCCAAGGCGTGGCCTTTC
ACCACGCTGGCCTTGCCGACACCGAGCGGGCGGCGATCGAGGCGGCTTTC
CGGGCGGGAATATTGAGAGTGCTCGCGGCGACCTCGACGCTTGGCGCTGG
GGTAAACCTTCCCGCGGGGAGGGTTATCCTGCGGAACCTCAACGCTGCCG
GAGGGGGGCTGAGTGCCACCGAGACGATTCCCCAAGGCGTGGCCTTTCAC
CACGCTGGCCTTGCCGACACCGAGCGGGCGGCGATCGAGGCGGCTTTCCG
GGCGGGAATATTGAGAGTGCTCGCGGCGACCTCGACGCTTGGCGCTGGGG
TAAACCTTCCCGCGGGGAGGGTTATCCTGCGGAACCTCAACGCTGCCGGA
GGGGGGCTGAGTGCCACC
back to top