mRNA_H-elongata_contig20727.5946.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI) HSP 1 Score: 334 bits (857), Expect = 5.850e-101 Identity = 185/303 (61.06%), Postives = 214/303 (70.63%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILRNLNAAGGGLSAT 909
AL+G+KGG ++ Q+AVCTIEKAN L+NRMAAA +LHE+SCLV+DELHMIG+GGRGQ L+ V R + P E +++D ++ TQI+GMSATLSNG ELA WLGATLHVSD+RP+PLDERV+LGM +YDK G VVR F PA+P++DPDHVVTLCRESC A DQVIIFCSTKQFCHNCA+K ETIP GVAFHHAGLADTER+AIE AFR+G L VLAATSTLGAGVNLPAGRVILRN+NA GGGLSAT
Sbjct: 172 ALHGAKGGD--LKQAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGGRGQILELLLAKVVRANRGAAVAPAVPQAE-TDADVGSNQPAPPRQHTQIVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERVVLGMHVYDKEGFVVREFAAPAHPQSDPDHVVTLCRESCRAGDQVIIFCSTKQFCHNCALK-------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGTLDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSAT 434
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE) HSP 1 Score: 233 bits (594), Expect = 1.130e-65 Identity = 148/303 (48.84%), Postives = 171/303 (56.44%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILRNLNAAGGGLSAT 909
AL+G+KGG ++ Q+AVCTIEKAN L+NRMAAA +LHE+SCLV+DELHMIG+G RG + P P+ ++ TQI+GMSATLSNG ELA WLGATLHVSD+RP+PLDER++ VIIFCSTKQFCHNCA+K ETIP GVAFHHAGLADTER+AIE AFR+G L VLAATSTLGAGVNLPAGRVILRN+NA GGGLSAT
Sbjct: 191 ALHGAKGGD--LKHAQIAVCTIEKANGLVNRMAAADELHELSCLVVDELHMIGDGRRGVGSN-------------KPAPL-------------------RQHTQIVGMSATLSNGAELAKWLGATLHVSDFRPIPLDERIV------------------------------------------VIIFCSTKQFCHNCALK-------------------------------------ETIPHGVAFHHAGLADTERSAIEKAFRSGALDVLAATSTLGAGVNLPAGRVILRNINAVGGGLSAT 380
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A060Q4U7_SOLME (DNA polymerase theta-like protein n=1 Tax=Solanum melongena TaxID=4111 RepID=A0A060Q4U7_SOLME) HSP 1 Score: 201 bits (512), Expect = 2.430e-56 Identity = 128/302 (42.38%), Postives = 186/302 (61.59%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSES--DAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNL-----GVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
+ YG++GGG+ + T VAVCTIEKAN+LINR+ +L E+ +V+DELHM+G+ RG L+ + SG+G T S G+T +S + D AG + QI+GMSATL N +A WL A L+ +++RPVPL+E + +G +Y++ +VR + A+ DPDH+V LC E V+IFCS+++ C + A K+L G +S +++ ++ + L + G+DPIL+ET+P GVA+HHAGL ER +E +R G++RVL ATSTL AGVNLPA RVI R
Sbjct: 138 SYYGNQGGGSLPKDTAVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQNRGYLLELMLTKLRYASGEGNTESS--SGETSGMSSAKVDPAGSL--------QIVGMSATLPNVTAVADWLQAALYQTEFRPVPLEEYIKVGNAIYNQKLDIVRIISKTADLGGKDPDHIVELCNEVVQEGHSVLIFCSSRKGCESTARHVAKHLKRFSLGQLSSHNESIDITSAIDALRRSPA-GLDPILEETLPAGVAYHHAGLTVEERETVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 428
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: UPI0018A0A7B1 (DNA polymerase theta isoform X1 n=2 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI0018A0A7B1) HSP 1 Score: 204 bits (520), Expect = 9.080e-56 Identity = 125/299 (41.81%), Postives = 170/299 (56.86%), Query Frame = 1
Query: 10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCA---------IKATKNLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
GS G + VAVCTIEKAN+LINR+ + + +V+DELHM+G+ GRG L+ + + + G ++ QIIGMSATL N LA+WLGA L+ +DYRPVPL E + +G +YDKS V+R F + + D DH+V+LC E+ V++FC +K +C A I+ T G + V ++R L+ +A + G+DPILQ T+P GVAFHHAGL ER +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct: 392 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDNMALLGMVVVDELHMVGDSGRGYLLELLLTKIR--------------YIAQKQNTTGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLHEHLKVGCNIYDKSLSVIRQFTPALHVKGDDDHIVSLCYETVREGRSVLLFCPSKNWCEKLADSIAREFYNIRHTDRQGEAEPQPVCLDREGLVDVVAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMVRVLAATSTLSSGVNLPARRVIIR 672
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A833RB11_9POAL (Helicase and polymerase-containing protein TEBICHI n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833RB11_9POAL) HSP 1 Score: 204 bits (518), Expect = 1.610e-55 Identity = 125/301 (41.53%), Postives = 178/301 (59.14%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQT----QIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERSTLMT-----QLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
+ YG++GGG+ + T VAVCTIEKAN+L+NR+ +L E+ +V+DELHM+G+ RG L+ + G PP E+ ++GEV+ K T QI+GMSAT+ N +A WL A L+ +D+RPVPL+E + +G +YDK+ VR + A DPDH+V LC E V++FCS+++ C + A +K L ++R+ S + K G+DP+L+ET+P GVA+HHAGL ER +E +R G++RVL ATSTL AGVNLPA RVI R
Sbjct: 390 SYYGNQGGGSLPKDTSVAVCTIEKANSLVNRLLEEGRLSELGIIVIDELHMVGDPHRGYLLELMLTKLRYAAGEGKPP---------EALSSGEVSSGAKNDTTQGLQIVGMSATMPNVAAVADWLQAALYQTDFRPVPLEEYIKVGNTIYDKNMNAVRVIPKRAELASKDPDHIVELCNEVVEQGHSVLLFCSSRKGCESTARHVSKFLVKFSARSGEQNGSDISDIGTAIDALKRCPAGLDPVLEETLPCGVAYHHAGLTMEERDIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 681
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A6J2PNM2_COTGO (DNA-directed DNA polymerase n=2 Tax=Cottoperca gobio TaxID=56716 RepID=A0A6J2PNM2_COTGO) HSP 1 Score: 204 bits (518), Expect = 1.680e-55 Identity = 125/299 (41.81%), Postives = 170/299 (56.86%), Query Frame = 1
Query: 10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCA---------IKATKNLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
GS G + VAVCTIEKAN+LINR+ L + +V+DELHM+G+ GRG L+ + + + G ++ QIIGMSATL N LA+WLGA L+ +DYRPVPL E + +G +YDKS VVR F + + D DH+V+LC E+ V++FC +K +C A ++ T G + V ++R L+ +A + G+DP+LQ T+P GVAFHHAGL ER +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct: 404 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDNLGLLGMVVVDELHMVGDSGRGYLLELLLTKIR--------------FIAQKQNTTGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLLEHLKVGRNIYDKSLSVVRQFTPAFHIKGDDDHIVSLCYETVSEGRSVLLFCPSKNWCEKLADSIAREFYNLRHTDRQGEAEPQPVCLDRDGLVDVVAQLRRTPAGLDPVLQRTVPWGVAFHHAGLTFDERDVLEGAFRQGVVRVLAATSTLSSGVNLPARRVIIR 684
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: UPI0010FB8FC1 (LOW QUALITY PROTEIN: DNA polymerase theta-like n=1 Tax=Labrus bergylta TaxID=56723 RepID=UPI0010FB8FC1) HSP 1 Score: 203 bits (517), Expect = 2.280e-55 Identity = 124/299 (41.47%), Postives = 169/299 (56.52%), Query Frame = 1
Query: 10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPVSGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNL---------GVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
GS G + VAVCTIEKAN+LINR+ L + +V+DELHM+G+ GRG L+ + + + +G ++ QIIGMSATL N LA+WLGA L+ +DYRPVPL E + +G +YD+S VVR F + + D DH+V+LC E+ V++FC +K +C + G A V++++ L+ +A + G+DPILQ T+P GVAFHHAGL ER +E AFR G+LRVLAATSTL +GVNLPA RVI+R
Sbjct: 390 GSTSAAGGFKALDVAVCTIEKANSLINRLIEEDSLGLLGVVVVDELHMVGDSGRGYLLELLLTKIR--------------FVAQKQNTSGSLSEG----VQIIGMSATLPNLSLLASWLGAELYQTDYRPVPLQEHLKVGCNIYDRSLSVVRQFTPVLHVKGDGDHIVSLCYETVRERRSVLLFCPSKNWCEKLVDSIAREFYNLRHMDRQGEAAPEPVSLDQEGLVDVIAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMLRVLAATSTLSSGVNLPARRVIIR 670
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A1J3JBY5_NOCCA (Helicase and polymerase-containing protein TEBICHI (Fragment) n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3JBY5_NOCCA) HSP 1 Score: 199 bits (505), Expect = 4.030e-55 Identity = 122/300 (40.67%), Postives = 179/300 (59.67%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPE-TDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATK-----NLGVPASRAVAMERSTLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
+ YG +GGG +GT VAVCTIEKAN+LINR+ +L E+ +V+DELHM+G+ RG L+ + +G+G + S ++D A + QI+GMSAT+ N G +A WL A L+ +++RPVPL+E + +G +Y+K VVR + A+ DPDH++ LC E + V+IFCS+++ C + A +K + V + M+ + + L + G+DP+L+ET+P GVA+HHAGL ER +E +R G++RVL ATSTL AGVNLPA RVI R
Sbjct: 313 SYYGIQGGGTLPKGTAVAVCTIEKANSLINRLLEEGRLSELGIIVIDELHMVGDQHRGYLLELMLTKLRYAAGEGGSESSXXXXXXXXXXKADPAHGL--------QIVGMSATMPNVGAVADWLQAALYQTEFRPVPLEEYIKVGNTIYNKKMEVVRTIPKAADMGGKDPDHIIELCNEIVQEGNSVLIFCSSRKGCESTARHISKLIKKVPIDVDGENSEYMDIRSAIDALRRSPS-GVDPVLEETLPSGVAYHHAGLTVEEREVVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 603
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A7J6FVE1_CANSA (Uncharacterized protein (Fragment) n=3 Tax=Cannabis sativa TaxID=3483 RepID=A0A7J6FVE1_CANSA) HSP 1 Score: 202 bits (514), Expect = 5.620e-55 Identity = 124/302 (41.06%), Postives = 178/302 (58.94%), Query Frame = 1
Query: 1 ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV---SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPAN-PETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATKNLGVPASRAVAMERS-------TLMTQLAKEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
+ YG++GGG + T VAVCTIEKAN+L+NR+ +L EI +V+DELHM+G+ RG L+ + +G+G +G + D A + QI+GMSAT+ N G +A WL A L+ +D+RPVPL+E + +G +Y+K+ +VR + A+ DPDHVV LC E V+IFCS+++ C + A +K L S V+ + S T + +G+DP+L+ET+P G+A+HHAGL ER +E +R G++RVL ATSTL AGVNLPA RVI R
Sbjct: 604 SYYGNQGGGTLPKDTSVAVCTIEKANSLLNRLLEEGRLSEIGIIVIDELHMVGDRNRGYLLELMLTKLRYAAGEGNSGGXXXXXXXXXXXKQDPAHGM--------QIVGMSATMPNVGAVADWLQAALYQTDFRPVPLEEYIKVGNTIYNKNMDIVRTIFKAADLGGKDPDHVVELCNEVVQEGHSVLIFCSSRKGCESTAKHISKFL---RSSKVSSQNSDAEYADITSAIDALRRCPVGLDPVLEETLPFGIAYHHAGLTVEEREVVETCYRKGLIRVLTATSTLAAGVNLPARRVIFR 894
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Match: A0A667YA76_9TELE (DNA-directed DNA polymerase n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YA76_9TELE) HSP 1 Score: 202 bits (513), Expect = 7.540e-55 Identity = 127/297 (42.76%), Postives = 168/297 (56.57%), Query Frame = 1
Query: 10 GSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHMIGEGGRGQTLDPAALPV----SGDGRTGSPPPIGDTIELSESDAAGEVTRAQKKQTQIIGMSATLSNGGELAAWLGATLHVSDYRPVPLDERVLLGMRMYDKSGVVVRNFLEPANPETDPDHVVTLCRESCLAHDQVIIFCSTKQFCHNCAIKATK---NLGVPASRAVAMERSTLMTQLA--KEMCMGIDPILQETIPQGVAFHHAGLADTERAAIEAAFRAGILRVLAATSTLGAGVNLPAGRVILR 873
GS G VAVCTIEKAN+LINR+ + + +V+DELHM+G+ GRG L+ + TGS + LSES Q++GMSATL N LA WL A L+ +DYRPVPL E + +G +YD S +VR F + D DH+V+LC E+ V++FC +K +C A + NL A +AV +++ L +A + G+DPILQ T+P GVAFHHAGL ER +E AFR G++RVLAATSTL +GVNLPA RVI+R
Sbjct: 211 GSTSAAGGFTALDVAVCTIEKANSLINRLIEEDSMGLLGMVVVDELHMVGDSGRGYLLELLLTKIRYIAQKQNTTGS-------VSLSES-------------VQVVGMSATLPNLSLLAGWLDAELYQTDYRPVPLQEHLKVGNNIYDSSLSLVRQFTPALQVKGDDDHIVSLCYETVSEGHSVLLFCPSKNWCEKLADSIAREFYNLRHTAPQAVGLDQEGLKDVIAQLRRTPAGLDPILQRTVPWGVAFHHAGLTFDERDVLEGAFRQGMIRVLAATSTLSSGVNLPARRVIIR 487 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20727.5946.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20727.5946.1 >prot_H-elongata_contig20727.5946.1 ID=prot_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp ALYGSKGGGNGIRGTQVAVCTIEKANALINRMAAASKLHEISCLVLDELHback to top mRNA from alignment at H-elongata_contig20727:98..4039- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20727.5946.1 ID=mRNA_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3942bp|location=Sequence derived from alignment at H-elongata_contig20727:98..4039- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20727:98..4039- >mRNA_H-elongata_contig20727.5946.1 ID=mRNA_H-elongata_contig20727.5946.1|Name=mRNA_H-elongata_contig20727.5946.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig20727:98..4039- (Himanthalia elongata Himel1 dioecious)back to top |