mRNA_H-elongata_contig207050.5929.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig207050.5929.1
Unique NamemRNA_H-elongata_contig207050.5929.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig207050.5929.1 vs. uniprot
Match: A0A6H5KGP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGP7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.640e-20
Identity = 57/108 (52.78%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    1 YLARPLGLARPDCDAAALAPFPVDVPPNCPYFPYREAYIPLVTRTADLGVPGEVEIATASCFAGGARALPPLIVEHPNAAVGG-GAERSRKRQKRLVLEALVKESLGL 321
            YLARPL L R  C  + L  FPVDVP NCPYFPY EAYIPL+TR       G    A     AG A A   L+    +   G  G+ + RKRQKR VLEALV+ESLGL
Sbjct:  143 YLARPLPLERSGCVLSPLVAFPVDVPKNCPYFPYGEAYIPLITRAETGAAKGAA--AGGDDDAGTALASSLLVQSVQDRGNGSEGSSQERKRQKREVLEALVRESLGL 248
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig207050.5929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGP7_9PHAE3.640e-2052.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig207050contigH-elongata_contig207050:180..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930157.0301065-CDS-H-elongata_contig207050:179..5151622930157.0301065-CDS-H-elongata_contig207050:179..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207050 180..515 +
1691679302.9495614-CDS-H-elongata_contig207050:179..5151691679302.9495614-CDS-H-elongata_contig207050:179..515Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig207050 180..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig207050.5929.1prot_H-elongata_contig207050.5929.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig207050 180..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig207050.5929.1

>prot_H-elongata_contig207050.5929.1 ID=prot_H-elongata_contig207050.5929.1|Name=mRNA_H-elongata_contig207050.5929.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
YLARPLGLARPDCDAAALAPFPVDVPPNCPYFPYREAYIPLVTRTADLGV
PGEVEIATASCFAGGARALPPLIVEHPNAAVGGGAERSRKRQKRLVLEAL
VKESLGLGGGS*
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mRNA from alignment at H-elongata_contig207050:180..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig207050.5929.1 ID=mRNA_H-elongata_contig207050.5929.1|Name=mRNA_H-elongata_contig207050.5929.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=336bp|location=Sequence derived from alignment at H-elongata_contig207050:180..515+ (Himanthalia elongata Himel1 dioecious)
TACCTGGCTCGCCCCCTTGGCCTGGCTCGCCCGGACTGTGATGCTGCCGC
CCTGGCACCCTTTCCGGTGGACGTCCCGCCCAACTGTCCATACTTTCCCT
ACCGCGAGGCATATATCCCCCTGGTAACGAGGACGGCCGATCTCGGCGTG
CCCGGCGAGGTGGAAATTGCTACAGCCTCATGCTTTGCGGGAGGGGCGAG
GGCCCTTCCGCCTCTGATCGTGGAACACCCCAACGCAGCGGTGGGAGGTG
GAGCTGAGAGGTCGCGAAAGCGGCAAAAACGCCTCGTTCTCGAGGCTCTG
GTCAAAGAGAGCTTGGGACTGGGTGGCGGGTCTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig207050:180..515+

>mRNA_H-elongata_contig207050.5929.1 ID=mRNA_H-elongata_contig207050.5929.1|Name=mRNA_H-elongata_contig207050.5929.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig207050:180..515+ (Himanthalia elongata Himel1 dioecious)
TACCTGGCTCGCCCCCTTGGCCTGGCTCGCCCGGACTGTGATGCTGCCGC
CCTGGCACCCTTTCCGGTGGACGTCCCGCCCAACTGTCCATACTTTCCCT
ACCGCGAGGCATATATCCCCCTGGTAACGAGGACGGCCGATCTCGGCGTG
CCCGGCGAGGTGGAAATTGCTACAGCCTCATGCTTTGCGGGAGGGGCGAG
GGCCCTTCCGCCTCTGATCGTGGAACACCCCAACGCAGCGGTGGGAGGTG
GAGCTGAGAGGTCGCGAAAGCGGCAAAAACGCCTCGTTCTCGAGGCTCTG
GTCAAAGAGAGCTTGGGACTGGGTGGCGGGTCTTAATACCTGGCTCGCCC
CCTTGGCCTGGCTCGCCCGGACTGTGATGCTGCCGCCCTGGCACCCTTTC
CGGTGGACGTCCCGCCCAACTGTCCATACTTTCCCTACCGCGAGGCATAT
ATCCCCCTGGTAACGAGGACGGCCGATCTCGGCGTGCCCGGCGAGGTGGA
AATTGCTACAGCCTCATGCTTTGCGGGAGGGGCGAGGGCCCTTCCGCCTC
TGATCGTGGAACACCCCAACGCAGCGGTGGGAGGTGGAGCTGAGAGGTCG
CGAAAGCGGCAAAAACGCCTCGTTCTCGAGGCTCTGGTCAAAGAGAGCTT
GGGACTGGGTGGCGGGTCTTAA
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