mRNA_H-elongata_contig206885.5924.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206885.5924.1
Unique NamemRNA_H-elongata_contig206885.5924.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: D7G4R5_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R5_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.490e-16
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADC+ALFSLDQAS IPVDVHVWRIACRDYDPTL +CK
Sbjct:  286 KVADCIALFSLDQASTIPVDVHVWRIACRDYDPTLVECK 324
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A7S3AXF9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AXF9_9EUKA)

HSP 1 Score: 75.1 bits (183), Expect = 8.680e-16
Identity = 31/39 (79.49%), Postives = 36/39 (92.31%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ+SAIPVD HVW IACRD+DPTL++C 
Sbjct:   28 KVADCVALFSLDQSSAIPVDTHVWEIACRDFDPTLRECS 66
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A7S3TAM5_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TAM5_EMIHU)

HSP 1 Score: 70.9 bits (172), Expect = 9.070e-15
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ  AIPVD HVWRIACRDYD +L  C+
Sbjct:   30 KVADCVALFSLDQVDAIPVDTHVWRIACRDYDTSLSACR 68
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A7S3URX7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3URX7_HETAK)

HSP 1 Score: 74.3 bits (181), Expect = 1.540e-14
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADC+ALF  DQ S+IPVD HVWRIACRDYD TLQDCK
Sbjct:   57 KVADCIALFCADQISSIPVDTHVWRIACRDYDQTLQDCK 95
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A7S3TAY9_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TAY9_EMIHU)

HSP 1 Score: 70.9 bits (172), Expect = 2.940e-14
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ  AIPVD HVWRIACRDYD +L  C+
Sbjct:   30 KVADCVALFSLDQVDAIPVDTHVWRIACRDYDTSLSACR 68
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A8J5XJ63_DIALT (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJ63_DIALT)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-13
Identity = 30/39 (76.92%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ + IPVDVHVW+IACRDYDP+L + K
Sbjct:  255 KVADCVALFSLDQPATIPVDVHVWQIACRDYDPSLHEAK 293
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BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A7S0K676_CAFRO (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K676_CAFRO)

HSP 1 Score: 70.1 bits (170), Expect = 3.980e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQA+AIPVD HVW IACRD DPTL+  K
Sbjct:  177 KVADCVALFSLDQAAAIPVDTHVWAIACRDMDPTLKAAK 215
[Close]
BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A4D9CXL3_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXL3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.120e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ  AIPVDVHVWRIACRDY P L++ K
Sbjct:  282 KVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHK 320
[Close]
BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: W7TXW3_9STRA (N-glycosylase dna lyase n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXW3_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.120e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQ  AIPVDVHVWRIACRDY P L++ K
Sbjct:  282 KVADCVALFSLDQHGAIPVDVHVWRIACRDYSPVLKEHK 320
[Close]
BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Match: A0A5A8E578_CAFRO (DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E578_CAFRO)

HSP 1 Score: 70.1 bits (170), Expect = 5.500e-13
Identity = 31/39 (79.49%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK 117
            +VADCVALFSLDQA+AIPVD HVW IACRD DPTL+  K
Sbjct:  271 KVADCVALFSLDQAAAIPVDTHVWAIACRDMDPTLKAAK 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206885.5924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R5_ECTSI1.490e-1687.18DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S3AXF9_9EUKA8.680e-1679.49Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
A0A7S3TAM5_EMIHU9.070e-1576.92Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A7S3URX7_HETAK1.540e-1479.49Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3TAY9_EMIHU2.940e-1476.92Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A8J5XJ63_DIALT1.590e-1376.92DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7S0K676_CAFRO3.980e-1379.49DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A4D9CXL3_9STRA4.120e-1379.49DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
W7TXW3_9STRA4.120e-1379.49N-glycosylase dna lyase n=2 Tax=Nannochloropsis ga... [more]
A0A5A8E578_CAFRO5.500e-1379.49DNA-(apurinic or apyrimidinic site) lyase n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206885contigH-elongata_contig206885:214..333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog2880.D7G4R5
Preferred nameOGG1
KEGG rclassRC00376
KEGG koko:K01809,ko:K03660,ko:K08193,ko:K11348,ko:K18081,ko:K20315
KEGG TC2.A.1.14
KEGG ReactionR01819
KEGG Pathwayko00051,ko00520,ko00562,ko01100,ko01110,ko01130,ko03410,ko04070,map00051,map00520,map00562,map01100,map01110,map01130,map03410,map04070
KEGG ModuleM00114
GOsGO:0000702,GO:0000723,GO:0000731,GO:0000775,GO:0001101,GO:0002526,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006278,GO:0006281,GO:0006282,GO:0006284,GO:0006285,GO:0006289,GO:0006301,GO:0006304,GO:0006355,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006979,GO:0006996,GO:0007004,GO:0007568,GO:0007584,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008534,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009889,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010605,GO:0010833,GO:0010941,GO:0014070,GO:0015631,GO:0016043,GO:0016363,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0016829,GO:0016835,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019985,GO:0031323,GO:0031324,GO:0031326,GO:0031518,GO:0031667,GO:0031974,GO:0031981,GO:0032200,GO:0032355,GO:0032356,GO:0032357,GO:0032502,GO:0032991,GO:0033273,GO:0033554,GO:0033683,GO:0033993,GO:0034039,GO:0034399,GO:0034404,GO:0034599,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042221,GO:0042493,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045007,GO:0045008,GO:0045471,GO:0045738,GO:0045934,GO:0046386,GO:0046434,GO:0046483,GO:0046677,GO:0046686,GO:0046700,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051252,GO:0051276,GO:0051593,GO:0051716,GO:0055086,GO:0060249,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070987,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071840,GO:0071897,GO:0072527,GO:0072529,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097305,GO:0098687,GO:0140078,GO:0140097,GO:1901135,GO:1901136,GO:1901291,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1903506,GO:2000112,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001141
EggNOG free text desc.8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
EggNOG OGsCOG0122@1,KOG2875@2759
EC3.1.3.64,3.1.3.95,4.2.99.18,5.3.1.8
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko02000,ko03036,ko03400,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionendonuclease III/similar to 8-oxoguanine DNA glycosylase isoform 1b
Ec32 orthologEc-20_000660.1
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.4986-CDS-H-elongata_contig206885:213..3331622930156.4986-CDS-H-elongata_contig206885:213..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206885 214..333 -
1691679302.7286077-CDS-H-elongata_contig206885:213..3331691679302.7286077-CDS-H-elongata_contig206885:213..333Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206885 214..333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206885.5924.1prot_H-elongata_contig206885.5924.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206885 214..333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206885.5924.1

>prot_H-elongata_contig206885.5924.1 ID=prot_H-elongata_contig206885.5924.1|Name=mRNA_H-elongata_contig206885.5924.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
QVADCVALFSLDQASAIPVDVHVWRIACRDYDPTLQDCK*
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mRNA from alignment at H-elongata_contig206885:214..333-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206885.5924.1 ID=mRNA_H-elongata_contig206885.5924.1|Name=mRNA_H-elongata_contig206885.5924.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig206885:214..333- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGGATTGTGTAGCACTCTTCTCTCTAGATCAGGCTTCGGCTAT
CCCTGTAGACGTCCATGTGTGGAGAATCGCGTGCCGAGACTACGATCCCA
CGCTGCAAGACTGCAAGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig206885:214..333-

>mRNA_H-elongata_contig206885.5924.1 ID=mRNA_H-elongata_contig206885.5924.1|Name=mRNA_H-elongata_contig206885.5924.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig206885:214..333- (Himanthalia elongata Himel1 dioecious)
CAGGTGGCGGATTGTGTAGCACTCTTCTCTCTAGATCAGGCTTCGGCTAT
CCCTGTAGACGTCCATGTGTGGAGAATCGCGTGCCGAGACTACGATCCCA
CGCTGCAAGACTGCAAGTAACAGGTGGCGGATTGTGTAGCACTCTTCTCT
CTAGATCAGGCTTCGGCTATCCCTGTAGACGTCCATGTGTGGAGAATCGC
GTGCCGAGACTACGATCCCACGCTGCAAGACTGCAAGTAA
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