mRNA_H-elongata_contig206835.5923.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206835.5923.1
Unique NamemRNA_H-elongata_contig206835.5923.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: D7FVF5_ECTSI (Transcription and mRNA export factor ENY2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF5_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.770e-42
Identity = 89/99 (89.90%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:    1 SPKQERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            S KQERRRKDEAVRATIMQKL+ETGERERLKDLLRXXXXXXXXXXXXX HCKEIIR KGLEKI+VDELV+EITPRGR TVPD++K+ELLQRIRKFLQST
Sbjct:    2 SDKQERRRKDEAVRATIMQKLIETGERERLKDLLRXXXXXXXXXXXXXEHCKEIIRGKGLEKISVDELVDEITPRGRATVPDDIKAELLQRIRKFLQST 100
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A6U1JN82_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6U1JN82_9STRA)

HSP 1 Score: 127 bits (320), Expect = 2.340e-36
Identity = 82/96 (85.42%), Postives = 91/96 (94.79%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            QER++KD+AVR TIMQKLVETGE+ERLK+LL XXXXXXXXXXXXXX+CKE+IRSKGLEKITVDELV EITPRGR TVPDEVK+ELLQ IRKFLQ+T
Sbjct:    7 QERKQKDDAVRTTIMQKLVETGEKERLKELLXXXXXXXXXXXXXXXYCKEVIRSKGLEKITVDELVAEITPRGRATVPDEVKTELLQSIRKFLQAT 102
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A7S2WUF1_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WUF1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.980e-35
Identity = 73/96 (76.04%), Postives = 88/96 (91.67%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            ++RRRKDEAVRATIMQKL+ETGE+ERLK++LR XXXXXXXXXX   HCK++IR KGL++ITVDELV EITP GR TVPD++K++LLQRIR+FLQST
Sbjct:   10 EDRRRKDEAVRATIMQKLIETGEKERLKEMLRSXXXXXXXXXXLREHCKDVIRKKGLDRITVDELVAEITPHGRDTVPDKIKADLLQRIRQFLQST 105
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A7S3ZV17_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZV17_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.550e-34
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQ 291
            QER++KD+AVR TIMQKLVETGE+ERLK+LL XXXXXXXXXXXXXX+CKE+IRSKGLEKITVDELV EITPRGR TVPDEVK+ELLQ IRKFLQ
Sbjct:    7 QERKQKDDAVRTTIMQKLVETGEKERLKELLXXXXXXXXXXXXXXXYCKEVIRSKGLEKITVDELVAEITPRGRATVPDEVKTELLQSIRKFLQ 100
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A7S2ARR6_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2ARR6_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.090e-32
Identity = 76/96 (79.17%), Postives = 90/96 (93.75%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            ++R+RKDEAVRATIMQKL+ETGE+ERLK++LRXXXXXXXXXXXXXX   E+IRSKGLE+ITVDELV +ITP+GR TVP+++K ELLQRIRKFLQST
Sbjct:   20 EDRKRKDEAVRATIMQKLIETGEKERLKEMLRXXXXXXXXXXXXXXXXXEVIRSKGLERITVDELVSQITPQGRATVPEKIKVELLQRIRKFLQST 115
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A835YYP0_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYP0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.520e-31
Identity = 74/94 (78.72%), Postives = 86/94 (91.49%), Query Frame = 1 
Query:   16 RRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            +RRK+EAVRA+IMQKLVETGE+ERLKDLLRXXXXXXXXXXXXXX C++II  KGLEK+TVDELV EITP+ R TVP+E+KSELL RIR FL++T
Sbjct:   11 KRRKEEAVRASIMQKLVETGEKERLKDLLRXXXXXXXXXXXXXXXCRQIISKKGLEKVTVDELVSEITPKARDTVPEEIKSELLNRIRTFLKAT 104
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A7S2V4S5_9STRA (Transcription and mRNA export factor ENY2 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S5_9STRA)

HSP 1 Score: 114 bits (284), Expect = 7.740e-31
Identity = 77/97 (79.38%), Postives = 86/97 (88.66%), Query Frame = 1 
Query:    7 KQERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST 297
            K ER +KDE VRATIMQ+L+ETGE++RLK+L  XXXXXXXXXXXXXX    IIR+KGLEKITVDELV+EITPRGR TVPD VK+ELLQRIRKFLQST
Sbjct:    9 KVERAQKDEQVRATIMQRLIETGEKDRLKELXXXXXXXXXXXXXXXXXXXXIIRNKGLEKITVDELVQEITPRGRATVPDNVKAELLQRIRKFLQST 105
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A210QN45_MIZYE (Transcription and mRNA export factor ENY2 n=2 Tax=Pectinidae TaxID=6566 RepID=A0A210QN45_MIZYE)

HSP 1 Score: 111 bits (277), Expect = 8.480e-30
Identity = 58/93 (62.37%), Postives = 69/93 (74.19%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFL 288
            Q+R+ KD  +RATI QKLVETGERERLK+LLR              HCKE+++ KGLE ITVD+LV+EITP+GR  VPD+VK ELLQRIR FL
Sbjct:    5 QDRKLKDAQMRATINQKLVETGERERLKELLRTRLIECGWRDQLKAHCKEVVKEKGLEHITVDDLVQEITPKGRALVPDDVKKELLQRIRTFL 97
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A8B8ECM6_CRAVI (Transcription and mRNA export factor ENY2 n=3 Tax=Autobranchia TaxID=2785011 RepID=A0A8B8ECM6_CRAVI)

HSP 1 Score: 110 bits (274), Expect = 2.290e-29
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 1 
Query:   13 ERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFL 288
            E +RKD  +RATI QKLVETGER+RLKDLLR  XXXXXXXXXX  HCKE+++ KGLE ITVD+LV EITP+GR  VPD VK ELLQRIR FL
Sbjct:    4 EMKRKDAQMRATINQKLVETGERDRLKDLLRTRXXXXXXXXXXKQHCKEVVKQKGLEHITVDDLVSEITPKGRALVPDNVKKELLQRIRTFL 95
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BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Match: A0A2C9M5V1_BIOGL (Transcription and mRNA export factor ENY2 n=3 Tax=Euthyneura TaxID=216307 RepID=A0A2C9M5V1_BIOGL)

HSP 1 Score: 110 bits (274), Expect = 2.430e-29
Identity = 60/93 (64.52%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   10 QERRRKDEAVRATIMQKLVETGERERLKDLLRXXXXXXXXXXXXXXHCKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFL 288
            QER+ KD  +RATI QKLVETGERERLK+LLR              +CKEI++ KGLE ITVD+LV EITPRGR  VPDE+K ELLQRIR FL
Sbjct:    5 QERKLKDAHMRATINQKLVETGERERLKELLRARLIECGWRDQLKAYCKEIVQQKGLEHITVDDLVSEITPRGRSLVPDEIKKELLQRIRTFL 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206835.5923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVF5_ECTSI1.770e-4289.90Transcription and mRNA export factor ENY2 n=2 Tax=... [more]
A0A6U1JN82_9STRA2.340e-3685.42Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A7S2WUF1_9STRA2.980e-3576.04Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A7S3ZV17_9STRA1.550e-3486.17Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S2ARR6_9STRA1.090e-3279.17Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A835YYP0_9STRA7.520e-3178.72Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A7S2V4S5_9STRA7.740e-3179.38Transcription and mRNA export factor ENY2 n=1 Tax=... [more]
A0A210QN45_MIZYE8.480e-3062.37Transcription and mRNA export factor ENY2 n=2 Tax=... [more]
A0A8B8ECM6_CRAVI2.290e-2973.91Transcription and mRNA export factor ENY2 n=3 Tax=... [more]
A0A2C9M5V1_BIOGL2.430e-2964.52Transcription and mRNA export factor ENY2 n=3 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206835contigH-elongata_contig206835:494..1009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.8e-32
Seed eggNOG ortholog2880.D7FVF5
Preferred nameENY2
KEGG koko:K11368
GOsGO:0000123,GO:0000124,GO:0000785,GO:0001085,GO:0001091,GO:0001094,GO:0001098,GO:0001099,GO:0002791,GO:0002792,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006325,GO:0006355,GO:0006357,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006508,GO:0006611,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010639,GO:0010646,GO:0010648,GO:0010817,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016569,GO:0016570,GO:0016578,GO:0016579,GO:0016973,GO:0019219,GO:0019222,GO:0019538,GO:0019904,GO:0023051,GO:0023057,GO:0030374,GO:0031248,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031490,GO:0031503,GO:0031935,GO:0031936,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0034399,GO:0034613,GO:0036211,GO:0040029,GO:0042886,GO:0043035,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045815,GO:0045893,GO:0045935,GO:0045944,GO:0046676,GO:0046883,GO:0046888,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0050796,GO:0051028,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051223,GO:0051224,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0060255,GO:0060341,GO:0060968,GO:0060969,GO:0061178,GO:0061179,GO:0065007,GO:0065008,GO:0070013,GO:0070201,GO:0070390,GO:0070461,GO:0070646,GO:0070647,GO:0070727,GO:0070742,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071819,GO:0071840,GO:0080090,GO:0090087,GO:0090276,GO:0090278,GO:0097159,GO:0140110,GO:1901363,GO:1901564,GO:1902275,GO:1902493,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1903530,GO:1903531,GO:1904950,GO:1905268,GO:1905368,GO:1990234,GO:2000112,GO:2001141,GO:2001251
EggNOG free text desc.histone deubiquitination
EggNOG OGsKOG4479@1,KOG4479@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTranscription and mRNA export factor ENY2
Ec32 orthologEc-14_000920.1
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930156.3862936-CDS-H-elongata_contig206835:493..6371622930156.3862936-CDS-H-elongata_contig206835:493..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206835 494..637 +
1691679302.701536-CDS-H-elongata_contig206835:493..6371691679302.701536-CDS-H-elongata_contig206835:493..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206835 494..637 +
1622930156.4106576-CDS-H-elongata_contig206835:853..10091622930156.4106576-CDS-H-elongata_contig206835:853..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206835 854..1009 +
1691679302.7176478-CDS-H-elongata_contig206835:853..10091691679302.7176478-CDS-H-elongata_contig206835:853..1009Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206835 854..1009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206835.5923.1prot_H-elongata_contig206835.5923.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206835 494..1009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206835.5923.1

>prot_H-elongata_contig206835.5923.1 ID=prot_H-elongata_contig206835.5923.1|Name=mRNA_H-elongata_contig206835.5923.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
SPKQERRRKDEAVRATIMQKLVETGERERLKDLLRERLIECGWRDELKEH
CKEIIRSKGLEKITVDELVEEITPRGRVTVPDEVKSELLQRIRKFLQST*
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mRNA from alignment at H-elongata_contig206835:494..1009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206835.5923.1 ID=mRNA_H-elongata_contig206835.5923.1|Name=mRNA_H-elongata_contig206835.5923.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=516bp|location=Sequence derived from alignment at H-elongata_contig206835:494..1009+ (Himanthalia elongata Himel1 dioecious)
AGTCCAAAGCAGGAAAGGCGCAGAAAAGATGAGGCGGTGCGAGCGACGAT
CATGCAGAAGCTCGTCGAAACGGGCGAACGGGAGAGGCTGAAGGACCTTC
TCCGAGAGCGCCTCATCGAGTGTGGATGGCGGGACGAGCTCAAGGTGCGG
ACGTACTACGATGCGGATGGCGAATCACGAACTACTGTGTTTTTGTAATG
ATGAGCCAATAAAATAAGTAGCAATAGCTGAACCCTCACAACGTACAATG
GCGATCACCTCGGAGGTCACGACACTCCACACTGGTTCATTTGAAGGCGG
AGGACGTATTTTGCCCCCCCCCCCCCCCCTCTCCCTCCCCTTCCTCTTTC
GGGGAGACAGGAACATTGCAAAGAAATAATCCGCAGTAAGGGTCTGGAGA
AGATTACAGTCGATGAGCTGGTGGAAGAGATCACTCCGCGGGGAAGGGTG
ACAGTCCCCGACGAGGTTAAGTCGGAGCTTCTGCAGAGGATCAGGAAGTT
CTTGCAGTCGACTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig206835:494..1009+

>mRNA_H-elongata_contig206835.5923.1 ID=mRNA_H-elongata_contig206835.5923.1|Name=mRNA_H-elongata_contig206835.5923.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig206835:494..1009+ (Himanthalia elongata Himel1 dioecious)
AGTCCAAAGCAGGAAAGGCGCAGAAAAGATGAGGCGGTGCGAGCGACGAT
CATGCAGAAGCTCGTCGAAACGGGCGAACGGGAGAGGCTGAAGGACCTTC
TCCGAGAGCGCCTCATCGAGTGTGGATGGCGGGACGAGCTCAAGAGTCCA
AAGCAGGAAAGGCGCAGAAAAGATGAGGCGGTGCGAGCGACGATCATGCA
GAAGCTCGTCGAAACGGGCGAACGGGAGAGGCTGAAGGACCTTCTCCGAG
AGCGCCTCATCGAGTGTGGATGGCGGGACGAGCTCAAGGAACATTGCAAA
GAAATAATCCGCAGTAAGGGTCTGGAGAAGATTACAGTCGATGAGCTGGT
GGAAGAGATCACTCCGCGGGGAAGGGTGACAGTCCCCGACGAGGTTAAGT
CGGAGCTTCTGCAGAGGATCAGGAAGTTCTTGCAGTCGACTTAAGAACAT
TGCAAAGAAATAATCCGCAGTAAGGGTCTGGAGAAGATTACAGTCGATGA
GCTGGTGGAAGAGATCACTCCGCGGGGAAGGGTGACAGTCCCCGACGAGG
TTAAGTCGGAGCTTCTGCAGAGGATCAGGAAGTTCTTGCAGTCGACTTAA
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