mRNA_H-elongata_contig206692.5914.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: D7FK99_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK99_ECTSI) HSP 1 Score: 149 bits (375), Expect = 4.770e-42 Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query: 58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESEWPE 282
V+HQKGIQCRFGARGIIAESHFDHGKNFV MLRGRKRYL+NPP ACP LGII +R HPSFRHS IDWSDES+WPE
Sbjct: 138 VSHQKGIQCRFGARGIIAESHFDHGKNFVFMLRGRKRYLMNPPRACPSLGIITERAHPSFRHSDIDWSDESDWPE 212
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S2CWZ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWZ0_9STRA) HSP 1 Score: 109 bits (272), Expect = 1.100e-27 Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1
Query: 58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
V KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L PP+ C L II+DRGHPS+RHS +DWSD
Sbjct: 82 VKKNKGIQCRFGMRGVIAEAHYDSGRNMVAMLKGAKRYILAPPKECERLAIIKDRGHPSYRHSEVDWSD 150
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S3XZK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZK4_HETAK) HSP 1 Score: 108 bits (270), Expect = 1.180e-26 Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query: 61 AHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
A +GIQCRFG RG+IAE+H+D G+NF+ MLRG KRY+L PP +C L +I+DR HPSFRHS IDWSD
Sbjct: 161 AGNRGIQCRFGMRGVIAEAHYDVGRNFIAMLRGSKRYILTPPSSCTMLDLIKDRAHPSFRHSRIDWSD 228
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A8J2SRP3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRP3_9STRA) HSP 1 Score: 109 bits (273), Expect = 3.390e-26 Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query: 58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDE 267
+ KGIQCRFG RG+IAE+H+D G+N V MLRG KRY+L PP +C HL +I DR HPSFRHS IDWS E
Sbjct: 290 IRKNKGIQCRFGMRGVIAEAHYDGGRNMVAMLRGAKRYILTPPTSCAHLNLIRDRKHPSFRHSEIDWSHE 359
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A482SW15_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW15_9ARCH) HSP 1 Score: 107 bits (268), Expect = 1.280e-25 Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query: 58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
V KGIQCRFG RGIIAE+H+D GKN V M++G KRY++ PP C HL I+ D HPS+RHSV+DWSD
Sbjct: 283 VGANKGIQCRFGMRGIIAEAHYDSGKNMVAMIKGAKRYIITPPWTCDHLSILSDTKHPSYRHSVVDWSD 351
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S0TF31_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TF31_9STRA) HSP 1 Score: 106 bits (265), Expect = 1.660e-25 Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query: 61 AHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESE 273
A KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L PP +C HL II DR HPSFRHS DWS +E
Sbjct: 204 AANKGIQCRFGMRGVIAEAHYDGGRNMVAMLKGAKRYILAPPSSCSHLTIIPDRRHPSFRHSTTDWSKPTE 274
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S3JRJ1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRJ1_9STRA) HSP 1 Score: 105 bits (263), Expect = 9.980e-25 Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1
Query: 58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESE 273
+A KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L+PP +C +L II DR HPSFRHS DWS +++
Sbjct: 315 IAANKGIQCRFGMRGVIAEAHYDGGRNMVAMLKGAKRYILSPPTSCSNLKIIPDRRHPSFRHSTTDWSHQNQ 386
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S2R7X4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7X4_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 7.440e-24 Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 1
Query: 67 QKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDW 258
QKGIQCRFG RG+ A +H+D G+N + M++G KRY+L+PP CP LGI+ R HPSFRHS++++
Sbjct: 50 QKGIQCRFGERGVTAATHYDAGRNMIAMIKGAKRYILSPPRECPKLGIVPQRAHPSFRHSMLNF 113
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5) HSP 1 Score: 98.6 bits (244), Expect = 6.260e-22 Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 52 VQVAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDE--SEWPEVRAA 294
V + +GI CRFGARGIIAE+H+D G+NFV +LRG KRY+L PPE CP+L + RGHP RH+ DWSD +E+P+++ A
Sbjct: 643 VDPSQNRGINCRFGARGIIAEAHYDGGRNFVTILRGAKRYILLPPEECPNL-YLYPRGHPEARHAKADWSDLDLNEFPKMKNA 724
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A9USN8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9USN8_MONBE) HSP 1 Score: 97.1 bits (240), Expect = 2.180e-21 Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 70 KGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWS--DESEWPEVR 288
+GI CRFGARGIIAE+H+D G+NFV M+RG KRY++ PPE CP+L + R HP RHS DWS D +WP+++
Sbjct: 677 RGINCRFGARGIIAENHYDGGRNFVAMIRGAKRYIILPPEECPNL-YLWPRNHPESRHSRADWSQPDFEQWPKMK 750 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig206692.5914.1 >prot_H-elongata_contig206692.5914.1 ID=prot_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp MAGPDCPPPPPPKTPRYVQVAHQKGIQCRFGARGIIAESHFDHGKNFVLMback to top mRNA from alignment at H-elongata_contig206692:376..669- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig206692.5914.1 ID=mRNA_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig206692:376..669- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig206692:376..669- >mRNA_H-elongata_contig206692.5914.1 ID=mRNA_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig206692:376..669- (Himanthalia elongata Himel1 dioecious)back to top |