mRNA_H-elongata_contig206692.5914.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206692.5914.1
Unique NamemRNA_H-elongata_contig206692.5914.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: D7FK99_ECTSI (JmjC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK99_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 4.770e-42
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1
Query:   58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESEWPE 282
            V+HQKGIQCRFGARGIIAESHFDHGKNFV MLRGRKRYL+NPP ACP LGII +R HPSFRHS IDWSDES+WPE
Sbjct:  138 VSHQKGIQCRFGARGIIAESHFDHGKNFVFMLRGRKRYLMNPPRACPSLGIITERAHPSFRHSDIDWSDESDWPE 212          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S2CWZ0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWZ0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.100e-27
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1
Query:   58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
            V   KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L PP+ C  L II+DRGHPS+RHS +DWSD
Sbjct:   82 VKKNKGIQCRFGMRGVIAEAHYDSGRNMVAMLKGAKRYILAPPKECERLAIIKDRGHPSYRHSEVDWSD 150          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S3XZK4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZK4_HETAK)

HSP 1 Score: 108 bits (270), Expect = 1.180e-26
Identity = 45/68 (66.18%), Postives = 55/68 (80.88%), Query Frame = 1
Query:   61 AHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
            A  +GIQCRFG RG+IAE+H+D G+NF+ MLRG KRY+L PP +C  L +I+DR HPSFRHS IDWSD
Sbjct:  161 AGNRGIQCRFGMRGVIAEAHYDVGRNFIAMLRGSKRYILTPPSSCTMLDLIKDRAHPSFRHSRIDWSD 228          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A8J2SRP3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SRP3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.390e-26
Identity = 46/70 (65.71%), Postives = 54/70 (77.14%), Query Frame = 1
Query:   58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDE 267
            +   KGIQCRFG RG+IAE+H+D G+N V MLRG KRY+L PP +C HL +I DR HPSFRHS IDWS E
Sbjct:  290 IRKNKGIQCRFGMRGVIAEAHYDGGRNMVAMLRGAKRYILTPPTSCAHLNLIRDRKHPSFRHSEIDWSHE 359          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A482SW15_9ARCH (JmjC domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SW15_9ARCH)

HSP 1 Score: 107 bits (268), Expect = 1.280e-25
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1
Query:   58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSD 264
            V   KGIQCRFG RGIIAE+H+D GKN V M++G KRY++ PP  C HL I+ D  HPS+RHSV+DWSD
Sbjct:  283 VGANKGIQCRFGMRGIIAEAHYDSGKNMVAMIKGAKRYIITPPWTCDHLSILSDTKHPSYRHSVVDWSD 351          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S0TF31_9STRA (Hypothetical protein n=1 Tax=Chrysocystis fragilis TaxID=1411660 RepID=A0A7S0TF31_9STRA)

HSP 1 Score: 106 bits (265), Expect = 1.660e-25
Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 1
Query:   61 AHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESE 273
            A  KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L PP +C HL II DR HPSFRHS  DWS  +E
Sbjct:  204 AANKGIQCRFGMRGVIAEAHYDGGRNMVAMLKGAKRYILAPPSSCSHLTIIPDRRHPSFRHSTTDWSKPTE 274          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S3JRJ1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRJ1_9STRA)

HSP 1 Score: 105 bits (263), Expect = 9.980e-25
Identity = 44/72 (61.11%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   58 VAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESE 273
            +A  KGIQCRFG RG+IAE+H+D G+N V ML+G KRY+L+PP +C +L II DR HPSFRHS  DWS +++
Sbjct:  315 IAANKGIQCRFGMRGVIAEAHYDGGRNMVAMLKGAKRYILSPPTSCSNLKIIPDRRHPSFRHSTTDWSHQNQ 386          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A0A7S2R7X4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7X4_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 7.440e-24
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 1
Query:   67 QKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDW 258
            QKGIQCRFG RG+ A +H+D G+N + M++G KRY+L+PP  CP LGI+  R HPSFRHS++++
Sbjct:   50 QKGIQCRFGERGVTAATHYDAGRNMIAMIKGAKRYILSPPRECPKLGIVPQRAHPSFRHSMLNF 113          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: F2UI36_SALR5 (JmjC domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UI36_SALR5)

HSP 1 Score: 98.6 bits (244), Expect = 6.260e-22
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query:   52 VQVAHQKGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDE--SEWPEVRAA 294
            V  +  +GI CRFGARGIIAE+H+D G+NFV +LRG KRY+L PPE CP+L  +  RGHP  RH+  DWSD   +E+P+++ A
Sbjct:  643 VDPSQNRGINCRFGARGIIAEAHYDGGRNFVTILRGAKRYILLPPEECPNL-YLYPRGHPEARHAKADWSDLDLNEFPKMKNA 724          
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Match: A9USN8_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9USN8_MONBE)

HSP 1 Score: 97.1 bits (240), Expect = 2.180e-21
Identity = 43/75 (57.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:   70 KGIQCRFGARGIIAESHFDHGKNFVLMLRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWS--DESEWPEVR 288
            +GI CRFGARGIIAE+H+D G+NFV M+RG KRY++ PPE CP+L  +  R HP  RHS  DWS  D  +WP+++
Sbjct:  677 RGINCRFGARGIIAENHYDGGRNFVAMIRGAKRYIILPPEECPNL-YLWPRNHPESRHSRADWSQPDFEQWPKMK 750          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206692.5914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK99_ECTSI4.770e-4286.67JmjC domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A7S2CWZ0_9STRA1.100e-2765.22Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S3XZK4_HETAK1.180e-2666.18Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A8J2SRP3_9STRA3.390e-2665.71Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A482SW15_9ARCH1.280e-2563.77JmjC domain-containing protein n=1 Tax=archaeon Ta... [more]
A0A7S0TF31_9STRA1.660e-2564.79Hypothetical protein n=1 Tax=Chrysocystis fragilis... [more]
A0A7S3JRJ1_9STRA9.980e-2561.11Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A7S2R7X4_9STRA7.440e-2457.81Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
F2UI36_SALR56.260e-2255.42JmjC domain-containing protein n=1 Tax=Salpingoeca... [more]
A9USN8_MONBE2.180e-2157.33Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206692contigH-elongata_contig206692:376..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue1e-18
Seed eggNOG ortholog946362.XP_004991157.1
KEGG koko:K10277
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.5985587-CDS-H-elongata_contig206692:375..6691622930155.5985587-CDS-H-elongata_contig206692:375..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206692 376..669 -
1691679302.3512435-CDS-H-elongata_contig206692:375..6691691679302.3512435-CDS-H-elongata_contig206692:375..669Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206692 376..669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206692.5914.1prot_H-elongata_contig206692.5914.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206692 376..669 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206692.5914.1

>prot_H-elongata_contig206692.5914.1 ID=prot_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MAGPDCPPPPPPKTPRYVQVAHQKGIQCRFGARGIIAESHFDHGKNFVLM
LRGRKRYLLNPPEACPHLGIIEDRGHPSFRHSVIDWSDESEWPEVRAA
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mRNA from alignment at H-elongata_contig206692:376..669-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206692.5914.1 ID=mRNA_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig206692:376..669- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGTCCTGATTGCCCCCCTCCCCCCCCTCCGAAAACGCCTCGTTA CGTCCAGGTGGCCCACCAAAAAGGCATCCAGTGTCGGTTCGGCGCGAGGG GTATCATCGCGGAGAGCCACTTCGACCACGGCAAAAATTTCGTTCTCATG CTGAGAGGACGGAAGCGGTACCTGCTCAACCCACCCGAGGCCTGTCCCCA CCTCGGCATCATCGAGGACCGGGGGCACCCATCTTTCCGACACTCCGTGA TCGATTGGTCAGACGAGTCCGAATGGCCCGAGGTGAGAGCCGCA
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Coding sequence (CDS) from alignment at H-elongata_contig206692:376..669-

>mRNA_H-elongata_contig206692.5914.1 ID=mRNA_H-elongata_contig206692.5914.1|Name=mRNA_H-elongata_contig206692.5914.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig206692:376..669- (Himanthalia elongata Himel1 dioecious)
ATGGCGGGTCCTGATTGCCCCCCTCCCCCCCCTCCGAAAACGCCTCGTTA
CGTCCAGGTGGCCCACCAAAAAGGCATCCAGTGTCGGTTCGGCGCGAGGG
GTATCATCGCGGAGAGCCACTTCGACCACGGCAAAAATTTCGTTCTCATG
CTGAGAGGACGGAAGCGGTACCTGCTCAACCCACCCGAGGCCTGTCCCCA
CCTCGGCATCATCGAGGACCGGGGGCACCCATCTTTCCGACACTCCGTGA
TCGATTGGTCAGACGAGTCCGAATGGCCCGAGGTGAGAGCCGCAATGGCG
GGTCCTGATTGCCCCCCTCCCCCCCCTCCGAAAACGCCTCGTTACGTCCA
GGTGGCCCACCAAAAAGGCATCCAGTGTCGGTTCGGCGCGAGGGGTATCA
TCGCGGAGAGCCACTTCGACCACGGCAAAAATTTCGTTCTCATGCTGAGA
GGACGGAAGCGGTACCTGCTCAACCCACCCGAGGCCTGTCCCCACCTCGG
CATCATCGAGGACCGGGGGCACCCATCTTTCCGACACTCCGTGATCGATT
GGTCAGACGAGTCCGAATGGCCCGAGGTGAGAGCCGCA
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