mRNA_H-elongata_contig20655.5909.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20655.5909.1
Unique NamemRNA_H-elongata_contig20655.5909.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20655.5909.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20655contigH-elongata_contig20655:2033..3111 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size386
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20655.5909.1prot_H-elongata_contig20655.5909.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20655 2126..2622 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.1600428-UTR-H-elongata_contig20655:2032..21251622930155.1600428-UTR-H-elongata_contig20655:2032..2125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 2033..2125 -
1691679302.184353-UTR-H-elongata_contig20655:2032..21251691679302.184353-UTR-H-elongata_contig20655:2032..2125Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 2033..2125 -
1622930155.21909-UTR-H-elongata_contig20655:2622..26401622930155.21909-UTR-H-elongata_contig20655:2622..2640Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 2623..2640 -
1691679302.2127388-UTR-H-elongata_contig20655:2622..26401691679302.2127388-UTR-H-elongata_contig20655:2622..2640Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 2623..2640 -
1622930155.233056-UTR-H-elongata_contig20655:3052..31111622930155.233056-UTR-H-elongata_contig20655:3052..3111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 3053..3111 -
1691679302.2203083-UTR-H-elongata_contig20655:3052..31111691679302.2203083-UTR-H-elongata_contig20655:3052..3111Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20655 3053..3111 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930155.185558-CDS-H-elongata_contig20655:2125..22061622930155.185558-CDS-H-elongata_contig20655:2125..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20655 2126..2206 -
1691679302.192579-CDS-H-elongata_contig20655:2125..22061691679302.192579-CDS-H-elongata_contig20655:2125..2206Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20655 2126..2206 -
1622930155.2021003-CDS-H-elongata_contig20655:2487..26221622930155.2021003-CDS-H-elongata_contig20655:2487..2622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20655 2488..2622 -
1691679302.2014055-CDS-H-elongata_contig20655:2487..26221691679302.2014055-CDS-H-elongata_contig20655:2487..2622Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20655 2488..2622 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20655.5909.1

>prot_H-elongata_contig20655.5909.1 ID=prot_H-elongata_contig20655.5909.1|Name=mRNA_H-elongata_contig20655.5909.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
METVSAARHLGPRTPAKGKENLRYRPFTPGTEPHPPRGNHGSWRETAAIS
KERQRPAYEWLRPRGTGGGAR*
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mRNA from alignment at H-elongata_contig20655:2033..3111-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20655.5909.1 ID=mRNA_H-elongata_contig20655.5909.1|Name=mRNA_H-elongata_contig20655.5909.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig20655:2033..3111- (Himanthalia elongata Himel1 dioecious)
CGGATGGTCTGTGCTGGTCGAAAGCGGAGGCGGTGGCAGCCGCGGGAAGA
AAGGCTAGGGTCAGTGCTTTTCATTTTACCGCCATACTTTGAGCTAGTGG
TTACCTATCCCACCTTACCGGGACGCTTGCTGGCCATCCCACCAGTGAAA
CTCTTCGTTGCCAATCTCACCCCAATCCAAACACGCCTACATGTTTTTTT
ATCACAATGCACGTGCAGTGCTTTTTACATCTTGTCGGCCCAATGTTTGA
AATGAGTGAACTTTGTCGTGTCCCCGTTGTGTTTGCGAGGGGAGTCTTCT
CACACCTTCCACTCATGCGGGGTCGGCTAGGAAGCAAACTGAGGTATCTC
TTTCCCTCTCTCTTGTTTTCCGTAGAACCATTACTCAGAACGCCGTTCGG
AGAATTTATCATCCGGCGATGACGGAATTTTTTGCGATCTGCTCCTCACA
CACACGTGCGCTTTCCTGCAGGAATCTTACGTTGGGTTTATGGAAACCGT
TTCGGCGGCGCGACATCTAGGGCCTCGGACTCCGGCAAAGGGCAAGGAGA
ACCTCCGCTATCGCCCGTTCACGCCCGGCACCGAACCTCACCCTCCTCGT
GGAAATCATGGAAGCTGGCGGGAGGTACTATAGCAACACTACGCTGTCAG
TAATACAAATTGGTCATTGGTTTTAGTTTGGGAGTTGAGAGAGATTAGAG
GCTTTTTTTTAGGGAGGAGGGGAGTAAGATATCTGTTTCGTGGCGCCCAC
GGTGTGTTGCATCGCATCAATCAGTCACATAGGAAAATATTGAAAGTATA
TAATGCTCCTCCCCCCACCCCCTCCCGGTTCCACCGCCCCCCCACTGTCC
GTTCCCTGCTCCGCTTGGTGAAACCCGCCTGCGATCGCGCTCGCGCTCAC
ATTAGACGGCGGCCATTTCAAAGGAGCGTCAGCGTCCTGCCTATGAGTGG
TTACGCCCGCGTGGCACTGGTGGTGGGGCGCGTTAACGTCAACCAAGGAG
CCGCCGCATTCACGGAGAGGAATTATATCCCAGGTCGGCATCCCTCTCCG
CATTGCGCCTTCAGTCTGCAGACTACGGT
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Coding sequence (CDS) from alignment at H-elongata_contig20655:2033..3111-

>mRNA_H-elongata_contig20655.5909.1 ID=mRNA_H-elongata_contig20655.5909.1|Name=mRNA_H-elongata_contig20655.5909.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig20655:2033..3111- (Himanthalia elongata Himel1 dioecious)
ATGGAAACCGTTTCGGCGGCGCGACATCTAGGGCCTCGGACTCCGGCAAA
GGGCAAGGAGAACCTCCGCTATCGCCCGTTCACGCCCGGCACCGAACCTC
ACCCTCCTCGTGGAAATCATGGAAGCTGGCGGGAGATGGAAACCGTTTCG
GCGGCGCGACATCTAGGGCCTCGGACTCCGGCAAAGGGCAAGGAGAACCT
CCGCTATCGCCCGTTCACGCCCGGCACCGAACCTCACCCTCCTCGTGGAA
ATCATGGAAGCTGGCGGGAGACGGCGGCCATTTCAAAGGAGCGTCAGCGT
CCTGCCTATGAGTGGTTACGCCCGCGTGGCACTGGTGGTGGGGCGCGTTA
AACGGCGGCCATTTCAAAGGAGCGTCAGCGTCCTGCCTATGAGTGGTTAC
GCCCGCGTGGCACTGGTGGTGGGGCGCGTTAA
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