mRNA_H-elongata_contig206453.5905.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206453.5905.1
Unique NamemRNA_H-elongata_contig206453.5905.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: D8LN69_ECTSI (Putative gamma-glutamylcyclotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN69_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 2.080e-27
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 1
Query:    1 DSTPLFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLDL 222
            + TPLFVYGTLMN++VL AL+ RVP+TR A LS YHR+RIKD+VFPAIRP+EG +V G+ M GL  REK+  DL
Sbjct:   25 EDTPLFVYGTLMNEKVLFALLERVPSTRKASLSGYHRFRIKDHVFPAIRPREGGSVEGLLMTGLDAREKLIFDL 98          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: UPI001F5C8B64 (AIG2-like protein D n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C8B64)

HSP 1 Score: 70.9 bits (172), Expect = 1.800e-13
Identity = 32/69 (46.38%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
            +FVYG+LM D+V+ A++ RVPA+  A L+ YHR+ +KD ++PAI P E   V G  + G+S  E + LD
Sbjct:   17 VFVYGSLMADEVVSAILHRVPASSPALLNDYHRFSVKDRIYPAILPVESKKVAGRVITGISDAELIVLD 85          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A836CNX4_9STRA (Putative gamma-glutamylcyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNX4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 3.770e-13
Identity = 31/66 (46.97%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKV 210
            +FVYGTLM  +V+  L+G +P++  A L  +HRYRIKD V+PAIRPKE  +V G+        E++
Sbjct:   13 VFVYGTLMESRVVTTLLGHMPSSEKAVLPGFHRYRIKDRVYPAIRPKEDGSVSGIVFDVTEREERI 78          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A2Z7AKT3_9LAMI (Putative gamma-glutamylcyclotransferase n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7AKT3_9LAMI)

HSP 1 Score: 69.3 bits (168), Expect = 5.190e-13
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 1
Query:    1 DSTPLFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
            + T +FVYG+L++D V+ AL+ RVP +  A L  YHR+ IK  V+PAI P E   V G  + G++PRE   LD
Sbjct:    4 NPTNVFVYGSLLSDDVVSALLSRVPPSSPAILPNYHRFSIKGVVYPAIIPVEDKKVTGKVLLGITPRELHILD 76          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A699J3E8_TANCI (Putative gamma-glutamylcyclotransferase n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699J3E8_TANCI)

HSP 1 Score: 66.2 bits (160), Expect = 1.990e-12
Identity = 32/73 (43.84%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 DSTPLFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
             +  +FVYG+L++D V+  L+ R+P T  A L+ YHR+ IK  V+PAI P E + V G  + GLS  E   LD
Sbjct:    5 SANTVFVYGSLLSDDVVRVLLNRIPRTAPAILNGYHRFSIKGRVYPAIIPVENNKVTGRVLSGLSAMELDILD 77          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A2K3MF52_TRIPR (Putative gamma-glutamylcyclotransferase n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MF52_TRIPR)

HSP 1 Score: 65.9 bits (159), Expect = 6.400e-12
Identity = 32/69 (46.38%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
            +FVYG+L+ D+V+ AL+ RVP++  A LS YHR++IK  V+PAI P +   V G  + G+S  E   LD
Sbjct:   20 VFVYGSLLADEVVRALLNRVPSSSSATLSDYHRFKIKGRVYPAILPVQSKKVTGRVLLGISGVELHILD 88          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: M8ADT7_TRIUA (GGACT domain-containing protein n=15 Tax=Triticeae TaxID=147389 RepID=M8ADT7_TRIUA)

HSP 1 Score: 67.0 bits (162), Expect = 7.090e-12
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
            +FVYG+LM D+V+ A++ R+P +  A L+ +HR+ +KD ++PAI P E   V G  + G+S  E + LD
Sbjct:   21 VFVYGSLMADEVVSAILKRIPVSSPALLANHHRFNVKDRIYPAILPVESKKVAGKVIMGISDAELIVLD 89          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A8J5SMZ0_ZIZPA (GGACT domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SMZ0_ZIZPA)

HSP 1 Score: 65.9 bits (159), Expect = 8.270e-12
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLDL 222
            +FVYGTLM ++V+  LIGR PA+  A L  + R+ IK+ V+PAI P +G  V G    G++ RE   LD+
Sbjct:    6 VFVYGTLMAEEVVRVLIGRAPASSPAVLINHQRFSIKERVYPAILPVDGKDVSGKVFKGITDRELDVLDI 75          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A2U1PHY4_ARTAN (Putative gamma-glutamylcyclotransferase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PHY4_ARTAN)

HSP 1 Score: 65.9 bits (159), Expect = 8.620e-12
Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query:    1 DSTPLFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKEGSTVRGMFMPGLSPREKVGLD 219
             +  +FVYG+L++D V+  L  R+P T  A L+ YHR+ IK  V+PAI P E   V G  + GLS  E   LD
Sbjct:    5 SANTVFVYGSLLSDDVVQVLFNRIPRTAPAILNGYHRFSIKGRVYPAILPVENKNVTGRVLSGLSATELDILD 77          
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Match: A0A2V0NNQ9_9CHLO (Putative gamma-glutamylcyclotransferase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NNQ9_9CHLO)

HSP 1 Score: 65.5 bits (158), Expect = 1.120e-11
Identity = 35/71 (49.30%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   13 LFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRPKE-GSTVRGMFMPGLSPREKVGLDL 222
            +FVYGTLM D+V+  L+ RVP ++ A L+ + R+ +K  VFPAI P + GS+VRG  +  LSPRE   LD+
Sbjct:    6 VFVYGTLMADEVVGLLLKRVPPSKPATLAGHRRHAVKGQVFPAIVPADAGSSVRGKVLLQLSPRELEILDV 76          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206453.5905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LN69_ECTSI2.080e-2766.22Putative gamma-glutamylcyclotransferase n=2 Tax=Ec... [more]
UPI001F5C8B641.800e-1346.38AIG2-like protein D n=1 Tax=Lolium rigidum TaxID=8... [more]
A0A836CNX4_9STRA3.770e-1346.97Putative gamma-glutamylcyclotransferase n=1 Tax=Tr... [more]
A0A2Z7AKT3_9LAMI5.190e-1346.58Putative gamma-glutamylcyclotransferase n=1 Tax=Do... [more]
A0A699J3E8_TANCI1.990e-1243.84Putative gamma-glutamylcyclotransferase n=1 Tax=Ta... [more]
A0A2K3MF52_TRIPR6.400e-1246.38Putative gamma-glutamylcyclotransferase n=1 Tax=Tr... [more]
M8ADT7_TRIUA7.090e-1242.03GGACT domain-containing protein n=15 Tax=Triticeae... [more]
A0A8J5SMZ0_ZIZPA8.270e-1245.71GGACT domain-containing protein n=1 Tax=Zizania pa... [more]
A0A2U1PHY4_ARTAN8.620e-1243.84Putative gamma-glutamylcyclotransferase n=1 Tax=Ar... [more]
A0A2V0NNQ9_9CHLO1.120e-1149.30Putative gamma-glutamylcyclotransferase n=1 Tax=Ra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206453contigH-elongata_contig206453:439..925 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score69.3
Seed ortholog evalue8.8e-10
Seed eggNOG ortholog37682.EMT19608
EggNOG free text desc.Gamma-glutamyl cyclotransferase, AIG2-like
EggNOG OGs29XB7@1,2RXRF@2759,37TXK@33090,3GIAE@35493,3IA3N@38820,3KSXY@4447
COG Functional cat.S
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionButirosin biosynthesis, BtrG-like
Ec32 orthologEc-05_003730.1
Exons2
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.8458834-CDS-H-elongata_contig206453:438..4831622930154.8458834-CDS-H-elongata_contig206453:438..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206453 439..483 +
1691679302.0567596-CDS-H-elongata_contig206453:438..4831691679302.0567596-CDS-H-elongata_contig206453:438..483Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206453 439..483 +
1622930154.862596-CDS-H-elongata_contig206453:739..9251622930154.862596-CDS-H-elongata_contig206453:739..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206453 740..925 +
1691679302.0678563-CDS-H-elongata_contig206453:739..9251691679302.0678563-CDS-H-elongata_contig206453:739..925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206453 740..925 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206453.5905.1prot_H-elongata_contig206453.5905.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206453 439..925 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206453.5905.1

>prot_H-elongata_contig206453.5905.1 ID=prot_H-elongata_contig206453.5905.1|Name=mRNA_H-elongata_contig206453.5905.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
DSTPLFVYGTLMNDQVLLALIGRVPATRGACLSCYHRYRIKDYVFPAIRP
KEGSTVRGMFMPGLSPREKVGLDLRF*
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mRNA from alignment at H-elongata_contig206453:439..925+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206453.5905.1 ID=mRNA_H-elongata_contig206453.5905.1|Name=mRNA_H-elongata_contig206453.5905.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=487bp|location=Sequence derived from alignment at H-elongata_contig206453:439..925+ (Himanthalia elongata Himel1 dioecious)
GACAGCACACCGCTGTTTGTATACGGGACTCTCATGAATGATCAGGTAGA TGTCACTCGTGCTGCAAAGCAAAGCTGAATGTACCCTAAGACAACGTAAA ATGACAACGCGTGTTTTATGTCAACGCGTACGCAGCTCGGGGTCAGACAT CAAGCGGAGCATGGATCCTTGTCCTGCTCCAGAAGCCGAAGTGCAATCGT GACAGCTGGCATCGGCACCGTACCGTGTGTTTCGTACGCCATAATGCCTA GTGCGCTCTTGCCGCCTCACGTACTCACTCAAACCATATGCGGCGACGCA GGTCTTGCTCGCGTTGATCGGGAGAGTCCCGGCCACTCGGGGGGCGTGCC TTTCGTGTTATCACCGGTACCGAATCAAGGACTACGTTTTCCCGGCAATC CGCCCGAAGGAAGGAAGCACCGTGCGAGGCATGTTCATGCCGGGGCTAAG CCCTCGAGAAAAAGTGGGTTTGGATTTAAGGTTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig206453:439..925+

>mRNA_H-elongata_contig206453.5905.1 ID=mRNA_H-elongata_contig206453.5905.1|Name=mRNA_H-elongata_contig206453.5905.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig206453:439..925+ (Himanthalia elongata Himel1 dioecious)
GACAGCACACCGCTGTTTGTATACGGGACTCTCATGAATGATCAGGACAG
CACACCGCTGTTTGTATACGGGACTCTCATGAATGATCAGGTCTTGCTCG
CGTTGATCGGGAGAGTCCCGGCCACTCGGGGGGCGTGCCTTTCGTGTTAT
CACCGGTACCGAATCAAGGACTACGTTTTCCCGGCAATCCGCCCGAAGGA
AGGAAGCACCGTGCGAGGCATGTTCATGCCGGGGCTAAGCCCTCGAGAAA
AAGTGGGTTTGGATTTAAGGTTTTGAGTCTTGCTCGCGTTGATCGGGAGA
GTCCCGGCCACTCGGGGGGCGTGCCTTTCGTGTTATCACCGGTACCGAAT
CAAGGACTACGTTTTCCCGGCAATCCGCCCGAAGGAAGGAAGCACCGTGC
GAGGCATGTTCATGCCGGGGCTAAGCCCTCGAGAAAAAGTGGGTTTGGAT
TTAAGGTTTTGA
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