mRNA_H-elongata_contig20643.5904.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20643.5904.1
Unique NamemRNA_H-elongata_contig20643.5904.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20643.5904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20643contigH-elongata_contig20643:3799..4503 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size658
Cds size381
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20643.5904.1prot_H-elongata_contig20643.5904.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20643 4074..4503 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.7681203-UTR-H-elongata_contig20643:3798..40731622930154.7681203-UTR-H-elongata_contig20643:3798..4073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20643 3799..4073 +
1691679302.0253954-UTR-H-elongata_contig20643:3798..40731691679302.0253954-UTR-H-elongata_contig20643:3798..4073Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20643 3799..4073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.784312-CDS-H-elongata_contig20643:4073..40871622930154.784312-CDS-H-elongata_contig20643:4073..4087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20643 4074..4087 +
1691679302.0354457-CDS-H-elongata_contig20643:4073..40871691679302.0354457-CDS-H-elongata_contig20643:4073..4087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20643 4074..4087 +
1622930154.798991-CDS-H-elongata_contig20643:4136..45031622930154.798991-CDS-H-elongata_contig20643:4136..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20643 4137..4503 +
1691679302.0452003-CDS-H-elongata_contig20643:4136..45031691679302.0452003-CDS-H-elongata_contig20643:4136..4503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20643 4137..4503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20643.5904.1

>prot_H-elongata_contig20643.5904.1 ID=prot_H-elongata_contig20643.5904.1|Name=mRNA_H-elongata_contig20643.5904.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=127bp
MGPHCGLLVLRGLMSPNNSLRGLPIRLRLIKRLLLGVSWLLLVLLPVGLL
LLVVRKLLLLLLLLVRKVLLLLLLLVRKVLLLLLLLVRKLLLLLVLLVRK
LLLMLLLIMKLLLLVRKLLLLMLVGRC
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mRNA from alignment at H-elongata_contig20643:3799..4503+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20643.5904.1 ID=mRNA_H-elongata_contig20643.5904.1|Name=mRNA_H-elongata_contig20643.5904.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=705bp|location=Sequence derived from alignment at H-elongata_contig20643:3799..4503+ (Himanthalia elongata Himel1 dioecious)
TTTAGCCGACCGTGATCCGGAGGTGGAGGGCGTTTGCGCCGAGGGGGAGG
ACCCGAGCGTGGCACCCTGAGCAGCTGCCGGAGATGACACCCCCTGGGTG
CCGTAGCCTGTCACCGACCCGGTGGCCGAAGCGGGATCTTGGCCTGTTGA
AGGGGGAGGGGCAAGGAGAGTGGACGGGGAAGCCACGTACCCCGTCGCGT
TGGAAGACTGCATCGGAGCGGAGAGGTTGTTCATGCTTGTGGTGCCGCTG
GGGCCGTAACCGATAGCGGTGTAAGATGGGGCCCCATTGTAACCCCCGCC
GGTGGCGTTGAGAGATCCTACCGCAGAAGTGGGATCATTGGGCTGCTGGT
CCTGAGAGGCCTGATGAGCCCCAACAACAGCCTGCGCGGGCTGCCCATAA
GGCTGAGACTGATTAAAAGGCTGCTGCTGGGGGTATCCTGGCTGCTGCTC
GTGCTGCTGCCCGTAGGGCTGTTGCTGCTGGTGGTAAGGAAGCTGTTGCT
GCTGCTGTTGCTGCTGGTGAGGAAGGTGCTGCTGCTGCTGTTGCTGCTGG
TGAGGAAGGTGCTGCTGCTGCTGTTGCTGCTGGTGAGGAAGCTGTTGCTG
CTGCTGGTGTTGCTGGTAAGGAAGTTGCTGTTGATGCTGCTGTTGATAAT
GAAGCTGCTGCTGCTGGTAAGGAAGCTGCTGCTGCTGATGTTGGTTGGTC
GGTGC
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Coding sequence (CDS) from alignment at H-elongata_contig20643:3799..4503+

>mRNA_H-elongata_contig20643.5904.1 ID=mRNA_H-elongata_contig20643.5904.1|Name=mRNA_H-elongata_contig20643.5904.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=762bp|location=Sequence derived from alignment at H-elongata_contig20643:3799..4503+ (Himanthalia elongata Himel1 dioecious)
ATGGGGCCCCATTGATGGGGCCCCATTGTGGGCTGCTGGTCCTGAGAGGC
CTGATGAGCCCCAACAACAGCCTGCGCGGGCTGCCCATAAGGCTGAGACT
GATTAAAAGGCTGCTGCTGGGGGTATCCTGGCTGCTGCTCGTGCTGCTGC
CCGTAGGGCTGTTGCTGCTGGTGGTAAGGAAGCTGTTGCTGCTGCTGTTG
CTGCTGGTGAGGAAGGTGCTGCTGCTGCTGTTGCTGCTGGTGAGGAAGGT
GCTGCTGCTGCTGTTGCTGCTGGTGAGGAAGCTGTTGCTGCTGCTGGTGT
TGCTGGTAAGGAAGTTGCTGTTGATGCTGCTGTTGATAATGAAGCTGCTG
CTGCTGGTAAGGAAGCTGCTGCTGCTGATGTTGGTTGGTCGGTGCTGGGC
TGCTGGTCCTGAGAGGCCTGATGAGCCCCAACAACAGCCTGCGCGGGCTG
CCCATAAGGCTGAGACTGATTAAAAGGCTGCTGCTGGGGGTATCCTGGCT
GCTGCTCGTGCTGCTGCCCGTAGGGCTGTTGCTGCTGGTGGTAAGGAAGC
TGTTGCTGCTGCTGTTGCTGCTGGTGAGGAAGGTGCTGCTGCTGCTGTTG
CTGCTGGTGAGGAAGGTGCTGCTGCTGCTGTTGCTGCTGGTGAGGAAGCT
GTTGCTGCTGCTGGTGTTGCTGGTAAGGAAGTTGCTGTTGATGCTGCTGT
TGATAATGAAGCTGCTGCTGCTGGTAAGGAAGCTGCTGCTGCTGATGTTG
GTTGGTCGGTGC
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