mRNA_H-elongata_contig206406.5903.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206406.5903.1
Unique NamemRNA_H-elongata_contig206406.5903.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: D7FP79_ECTSI (Triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP79_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.860e-28
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VHEGLRKW+ ENVS +VA+K  VRIIYGGSVNAGSAPTLG KPDIDGFLVGGASLKPEFV+I NAK
Sbjct:  181 QEVHEGLRKWVAENVSASVADK--VRIIYGGSVNAGSAPTLGSKPDIDGFLVGGASLKPEFVEIVNAK 246          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A0A6YYW3_SACLA (Mitochondrial triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=A0A0A6YYW3_SACLA)

HSP 1 Score: 110 bits (275), Expect = 9.430e-27
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VHEGLRKWI ENVS +VAEK  +RIIYGGSVNAGSAPTLG K DIDGFLVGGASLKPEFV I NAK
Sbjct:  207 QEVHEGLRKWIAENVSASVAEK--IRIIYGGSVNAGSAPTLGAKADIDGFLVGGASLKPEFVDIVNAK 272          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A0A6YYW1_DICDH (Mitochondrial triosephosphate isomerase/glyceraldehyde-3-phosphate dehydrogenase n=2 Tax=Dictyota dichotoma TaxID=2876 RepID=A0A0A6YYW1_DICDH)

HSP 1 Score: 105 bits (263), Expect = 4.660e-25
Identity = 54/68 (79.41%), Postives = 60/68 (88.24%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH  LRKWI ENVS AVA+K  VRIIYGGSVNAG+APTLG+K DIDGFLVGGASLKPEFV+I NAK
Sbjct:  207 QEVHLELRKWIAENVSAAVADK--VRIIYGGSVNAGTAPTLGEKADIDGFLVGGASLKPEFVEIVNAK 272          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: K1PJ59_CRAGI (Triosephosphate isomerase n=4 Tax=Crassostrea TaxID=6564 RepID=K1PJ59_CRAGI)

HSP 1 Score: 92.4 bits (228), Expect = 3.970e-22
Identity = 47/68 (69.12%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VHE LR W+ E VS  VA  A VRIIYGGSVNAG+   LG KPDIDGFLVGGASLKP+FV+I NA+
Sbjct:  103 QEVHEKLRAWLAERVSKEVA--ASVRIIYGGSVNAGNCKDLGAKPDIDGFLVGGASLKPDFVQIVNAR 168          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A183SWF8_SCHSO (Triosephosphate isomerase n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183SWF8_SCHSO)

HSP 1 Score: 92.4 bits (228), Expect = 5.830e-22
Identity = 43/68 (63.24%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH+ +R W+ ++V P+VA+K  VRI+YGGSVNAG+A  LG +PD+DGFLVGGASLKPEFV I NA+
Sbjct:  120 QEVHKAVRDWMRDHVDPSVADK--VRILYGGSVNAGNAKELGSQPDVDGFLVGGASLKPEFVNIINAR 185          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A3S5CBK8_9PLAT (Triosephosphate isomerase n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A3S5CBK8_9PLAT)

HSP 1 Score: 90.9 bits (224), Expect = 8.050e-22
Identity = 44/68 (64.71%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH  LRKW+ ENVSPAV+  A VRI+YGGSV + +   L  +PDIDGFLVGGASLKPEF+ I NAK
Sbjct:   77 QEVHAALRKWLSENVSPAVS--ASVRILYGGSVTSANCKDLASRPDIDGFLVGGASLKPEFIDIINAK 142          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A1B0GM07_PHLPP (Triosephosphate isomerase n=1 Tax=Phlebotomus papatasi TaxID=29031 RepID=A0A1B0GM07_PHLPP)

HSP 1 Score: 89.4 bits (220), Expect = 8.210e-22
Identity = 46/68 (67.65%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH+ LRKWI ENVS AVA  A +RI YGGSV AG+   L  KPDIDGFLVGGASLKPEF  I NA+
Sbjct:   26 QEVHQALRKWISENVSAAVA--AALRIQYGGSVTAGNCRELASKPDIDGFLVGGASLKPEFKDIVNAR 91          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A1D2AIY9_ORNBR (Triosephosphate isomerase (Fragment) n=1 Tax=Ornithodoros brasiliensis TaxID=888526 RepID=A0A1D2AIY9_ORNBR)

HSP 1 Score: 90.5 bits (223), Expect = 1.510e-21
Identity = 45/68 (66.18%), Postives = 53/68 (77.94%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH  LRKW+  N+SP VA K  +RI YGGSVNAG+   L  KPDIDGFLVGGASLKPEFV+I NA+
Sbjct:   88 QEVHGQLRKWLEHNISPDVASK--IRIQYGGSVNAGNCKELAKKPDIDGFLVGGASLKPEFVEIINAR 153          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A8E0VGU1_9TREM (Triosephosphate isomerase n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0VGU1_9TREM)

HSP 1 Score: 92.8 bits (229), Expect = 1.680e-21
Identity = 45/68 (66.18%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANAK 204
            ++VH  +R+W+ +NVSPAVA    VRIIYGGSVNA +   LG KPD+DGFLVGGASLKPEFV I NA+
Sbjct:  186 QEVHHAVRQWLEKNVSPAVASS--VRIIYGGSVNAANCKELGKKPDVDGFLVGGASLKPEFVDICNAR 251          
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Match: A0A6G4ZWW8_RHIMP (Triosephosphate isomerase (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G4ZWW8_RHIMP)

HSP 1 Score: 90.5 bits (223), Expect = 3.070e-21
Identity = 46/67 (68.66%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGFLVGGASLKPEFVKIANA 201
            ++VH  +R W+  NVSP VA K  VRI YGGSVNAG+   LG KPDIDGFLVGGASLKPEFV+I NA
Sbjct:  116 QEVHSKVRNWLSTNVSPDVASK--VRIQYGGSVNAGNCKELGRKPDIDGFLVGGASLKPEFVQIINA 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206406.5903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP79_ECTSI5.860e-2882.35Triosephosphate isomerase/glyceraldehyde-3-phospha... [more]
A0A0A6YYW3_SACLA9.430e-2782.35Mitochondrial triosephosphate isomerase/glyceralde... [more]
A0A0A6YYW1_DICDH4.660e-2579.41Mitochondrial triosephosphate isomerase/glyceralde... [more]
K1PJ59_CRAGI3.970e-2269.12Triosephosphate isomerase n=4 Tax=Crassostrea TaxI... [more]
A0A183SWF8_SCHSO5.830e-2263.24Triosephosphate isomerase n=1 Tax=Schistocephalus ... [more]
A0A3S5CBK8_9PLAT8.050e-2264.71Triosephosphate isomerase n=1 Tax=Protopolystoma x... [more]
A0A1B0GM07_PHLPP8.210e-2267.65Triosephosphate isomerase n=1 Tax=Phlebotomus papa... [more]
A0A1D2AIY9_ORNBR1.510e-2166.18Triosephosphate isomerase (Fragment) n=1 Tax=Ornit... [more]
A0A8E0VGU1_9TREM1.680e-2166.18Triosephosphate isomerase n=1 Tax=Fasciolopsis bus... [more]
A0A6G4ZWW8_RHIMP3.070e-2168.66Triosephosphate isomerase (Fragment) n=1 Tax=Rhipi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206406contigH-elongata_contig206406:47..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue8e-23
Seed eggNOG ortholog2880.D7FP79
KEGG rclassRC00149,RC00423
KEGG koko:K00134,ko:K01803
KEGG ReactionR01015,R01061
KEGG Pathwayko00010,ko00051,ko00562,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04066,ko05010,map00010,map00051,map00562,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04066,map05010
KEGG ModuleM00001,M00002,M00003,M00165,M00166,M00308,M00552
EggNOG free text desc.triosephosphate isomerase
EggNOG OGsCOG0057@1,COG0149@1,KOG0657@2759,KOG1643@2759
EC1.2.1.12,5.3.1.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTriosephosphate isomerase,
Ec32 orthologEc-24_000360.1
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.7155352-CDS-H-elongata_contig206406:46..1181622930154.7155352-CDS-H-elongata_contig206406:46..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206406 47..118 +
1691679302.0020244-CDS-H-elongata_contig206406:46..1181691679302.0020244-CDS-H-elongata_contig206406:46..118Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206406 47..118 +
1622930154.7276042-CDS-H-elongata_contig206406:531..6631622930154.7276042-CDS-H-elongata_contig206406:531..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206406 532..663 +
1691679302.0149062-CDS-H-elongata_contig206406:531..6631691679302.0149062-CDS-H-elongata_contig206406:531..663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206406 532..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206406.5903.1prot_H-elongata_contig206406.5903.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206406 47..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206406.5903.1

>prot_H-elongata_contig206406.5903.1 ID=prot_H-elongata_contig206406.5903.1|Name=mRNA_H-elongata_contig206406.5903.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
RQVHEGLRKWIGENVSPAVAEKARVRIIYGGSVNAGSAPTLGDKPDIDGF
LVGGASLKPEFVKIANAK
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mRNA from alignment at H-elongata_contig206406:47..663+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206406.5903.1 ID=mRNA_H-elongata_contig206406.5903.1|Name=mRNA_H-elongata_contig206406.5903.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=617bp|location=Sequence derived from alignment at H-elongata_contig206406:47..663+ (Himanthalia elongata Himel1 dioecious)
CGTCAGGTGCACGAGGGACTCCGAAAATGGATTGGCGAGAACGTGTCGCC CGCTGTCGCTGAAAAGGCAAGGGTGTGCTGCTGTTCGCTTTTCACATATT TAATATCATACTCTTTTAGTTTTTAGTTTTTTGTTGTTGTTGTTGCTGTT ATTGTTGTTGTGGTTTTTTGTTTTCTTTTTTGTTTTCTTTCCCTCAGGAG TAGCACACAACAGGTGAAAAGCTTCGGGGATGTCGCCCTCCAACCAGTTA ATTATTTTCCCTACGACTTGACCCCTATCGCTTTAGTGGCTATTCGTCAG ATATCCCCTCACTGCTACCAAGGCTAGCTGGCTATTAAAAGACGAAAGAC GAAATGCTGTATAGGGCTCACGACTGATGAATGGGATCATTAGTCCCATT CATCCAACACACGAACGTAATCCGATGCGTATTACGCTGTCTCTGTCCGT CTCCGTCCGTCTCCTTGATCTCCGTCTTTCCCTAGGTCCGCATCATCTAC GGTGGCAGCGTCAACGCTGGCTCGGCGCCGACCCTTGGCGACAAGCCCGA TATTGATGGGTTTCTCGTGGGCGGCGCCAGCCTCAAGCCGGAATTCGTTA AGATCGCCAACGCCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig206406:47..663+

>mRNA_H-elongata_contig206406.5903.1 ID=mRNA_H-elongata_contig206406.5903.1|Name=mRNA_H-elongata_contig206406.5903.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig206406:47..663+ (Himanthalia elongata Himel1 dioecious)
CGTCAGGTGCACGAGGGACTCCGAAAATGGATTGGCGAGAACGTGTCGCC
CGCTGTCGCTGAAAAGGCAAGGCGTCAGGTGCACGAGGGACTCCGAAAAT
GGATTGGCGAGAACGTGTCGCCCGCTGTCGCTGAAAAGGCAAGGGTCCGC
ATCATCTACGGTGGCAGCGTCAACGCTGGCTCGGCGCCGACCCTTGGCGA
CAAGCCCGATATTGATGGGTTTCTCGTGGGCGGCGCCAGCCTCAAGCCGG
AATTCGTTAAGATCGCCAACGCCAAGGTCCGCATCATCTACGGTGGCAGC
GTCAACGCTGGCTCGGCGCCGACCCTTGGCGACAAGCCCGATATTGATGG
GTTTCTCGTGGGCGGCGCCAGCCTCAAGCCGGAATTCGTTAAGATCGCCA
ACGCCAAG
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