mRNA_H-elongata_contig20632.5898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20632.5898.1
Unique NamemRNA_H-elongata_contig20632.5898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A6H5JH04_9PHAE (CYTOSOL_AP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH04_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.400e-21
Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDR---GGKPPR--WIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
            GGAITA LYL+EFVG+K  SP      GGK  +  WIHMDFMA+N  SRPGRPEGGE+QGMRALYAL ED +G
Sbjct:  598 GGAITAALYLDEFVGEK-ASPSTEEGEGGKKEKLPWIHMDFMAFNTNSRPGRPEGGESQGMRALYALLEDKYG 669          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: D7FXS8_ECTSI (Leucyl aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS8_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 6.150e-21
Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKK-----NRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
            GGAITA LYL+EFVG+K         G +  K P WIHMDFMA+N  SRPGRPEGGE+QGMRALYAL ED +G
Sbjct:  464 GGAITAALYLDEFVGEKAPPSTEEGEGRKKEKLP-WIHMDFMAFNTNSRPGRPEGGESQGMRALYALLEDKYG 535          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A835YM69_9STRA (Leucyl aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM69_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.760e-20
Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
            GGAITA LYL+EFVG   +  GD     P WIH+DFM +N++S PGRPEGGEA GMRAL+AL  + +G
Sbjct:  430 GGAITAALYLDEFVGVPAKEGGDAPAAKPTWIHIDFMGFNRSSSPGRPEGGEAMGMRALHALLRERYG 497          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: F0YS90_AURAN (CYTOSOL_AP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YS90_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 1.220e-18
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
            GGAITA LYL EFV     +P D GG PP W+H+D MAYN  S+PGRPEGGEA GMRAL+ L E  +
Sbjct:  233 GGAITAALYLAEFV----EAPPD-GGAPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALFRLLEARY 294          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S1U8C6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8C6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.300e-18
Identity = 45/77 (58.44%), Postives = 51/77 (66.23%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGK----KNRSPGDR------GGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
            GGAITA LYL EFV K    +  S GD         K P+W+HMD MAYNQ +RPGRPEGGEAQGMRA +AL E  +
Sbjct:  479 GGAITAALYLAEFVKKPAANEEESAGDEEDDAEAAPKAPKWLHMDVMAYNQGTRPGRPEGGEAQGMRAFFALLEKKY 555          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S3ZRK0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK0_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.340e-18
Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFGE 209
            GGAITA LYL EFV      P   GG  P W+H+D MA+N  S+PGRPEGGEA GMRAL+ L E  FG+
Sbjct:  449 GGAITAALYLAEFV-----EPAAEGGAAPPWLHLDMMAFNTGSKPGRPEGGEAMGMRALFRLLEARFGK 512          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: F0YNB6_AURAN (CYTOSOL_AP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNB6_AURAN)

HSP 1 Score: 86.3 bits (212), Expect = 4.180e-18
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
            GGAITA LYL EFV     +P D GG PP W+H+D MAYN  S+PGRPEGGEA GMRAL+ L E  +
Sbjct:  418 GGAITAALYLAEFV----EAPPD-GGAPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALFRLLEARY 479          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S4M0M3_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4M0M3_GUITH)

HSP 1 Score: 80.5 bits (197), Expect = 5.630e-18
Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
            GGAITA LYL++FV                W+HMDFMA+N ASRPGRPEGGEA G+RAL+AL +  +G
Sbjct:   56 GGAITAALYLQKFVTAGTD-----------WVHMDFMAFNTASRPGRPEGGEAMGLRALFALIQSKYG 112          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S1XE30_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XE30_9RHOD)

HSP 1 Score: 78.6 bits (192), Expect = 2.690e-17
Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 3
Query:    6 GAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFGEP 212
            GAITA LYL+EF+ K            P WIH+DFM YN A+RPGRPEGGEA G+RAL+A   +    P
Sbjct:   50 GAITAALYLQEFLVKD-----------PTWIHVDFMGYNSAARPGRPEGGEAMGIRALFAFIREFIESP 107          
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: R1BQN8_EMIHU (CYTOSOL_AP domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BQN8_EMIHU)

HSP 1 Score: 83.6 bits (205), Expect = 3.990e-17
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query:    3 GGAITAGLYLEEFVGKK----NRSPGDRG---GKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
            GGAITA LYL EFV       +  PG+      +PP W+H+D MAYN  S+PGRPEGGEA GMRALY L E  +G
Sbjct:  456 GGAITAALYLNEFVEAPEDGADGGPGEAAEETAQPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALYRLIERRWG 530          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH04_9PHAE1.400e-2168.49CYTOSOL_AP domain-containing protein n=1 Tax=Ectoc... [more]
D7FXS8_ECTSI6.150e-2165.75Leucyl aminopeptidase n=1 Tax=Ectocarpus siliculos... [more]
A0A835YM69_9STRA2.760e-2060.29Leucyl aminopeptidase n=1 Tax=Tribonema minus TaxI... [more]
F0YS90_AURAN1.220e-1862.69CYTOSOL_AP domain-containing protein (Fragment) n=... [more]
A0A7S1U8C6_9STRA1.300e-1858.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3ZRK0_9STRA2.340e-1859.42Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YNB6_AURAN4.180e-1862.69CYTOSOL_AP domain-containing protein n=1 Tax=Aureo... [more]
A0A7S4M0M3_GUITH5.630e-1855.88Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S1XE30_9RHOD2.690e-1753.62Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
R1BQN8_EMIHU3.990e-1756.00CYTOSOL_AP domain-containing protein n=2 Tax=Emili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20632contigH-elongata_contig20632:6453..6701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930154.161805-CDS-H-elongata_contig20632:6452..65941622930154.161805-CDS-H-elongata_contig20632:6452..6594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20632 6453..6594 -
1691679301.8137205-CDS-H-elongata_contig20632:6452..65941691679301.8137205-CDS-H-elongata_contig20632:6452..6594Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20632 6453..6594 -
1622930154.176313-CDS-H-elongata_contig20632:6624..67011622930154.176313-CDS-H-elongata_contig20632:6624..6701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20632 6625..6701 -
1691679301.8226175-CDS-H-elongata_contig20632:6624..67011691679301.8226175-CDS-H-elongata_contig20632:6624..6701Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20632 6625..6701 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20632.5898.1prot_H-elongata_contig20632.5898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20632 6453..6701 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20632.5898.1

>prot_H-elongata_contig20632.5898.1 ID=prot_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
TGGPSPPGYTWKNSSERKTGHRETEGGSRRAGSIWTSWPTTRLRGREGPR
AGRRRACELFTLSPKTCSGSHR*
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mRNA from alignment at H-elongata_contig20632:6453..6701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20632.5898.1 ID=mRNA_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig20632:6453..6701- (Himanthalia elongata Himel1 dioecious)
ACGGGGGGGCCATCACCGCCGGGCTATACTTGGAAGAATTCGTCGGAAAG AAAAACAGGTCACCGGGAGACAGAGGGGTCAGAGGAAGGCGGGAGGAAGA CAGGGAGGGGAAGCCGCCGCGCTGGATCCATATGGACTTCATGGCCTACA ACCAGGCTTCGAGGCCGGGAAGGCCCGAGGGCGGGGAGGCGCAGGGCATG CGAGCTCTTTACGCTCTCCCCGAAGACATGTTCGGGGAGCCACCGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig20632:6453..6701-

>mRNA_H-elongata_contig20632.5898.1 ID=mRNA_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig20632:6453..6701- (Himanthalia elongata Himel1 dioecious)
ACGGGGGGGCCATCACCGCCGGGCTATACTTGGAAGAATTCGTCGGAAAG
AAAAACAGGTCACCGGGAGACAGAGGGACGGGGGGGCCATCACCGCCGGG
CTATACTTGGAAGAATTCGTCGGAAAGAAAAACAGGTCACCGGGAGACAG
AGGGGGGAAGCCGCCGCGCTGGATCCATATGGACTTCATGGCCTACAACC
AGGCTTCGAGGCCGGGAAGGCCCGAGGGCGGGGAGGCGCAGGGCATGCGA
GCTCTTTACGCTCTCCCCGAAGACATGTTCGGGGAGCCACCGCTAGGGGA
AGCCGCCGCGCTGGATCCATATGGACTTCATGGCCTACAACCAGGCTTCG
AGGCCGGGAAGGCCCGAGGGCGGGGAGGCGCAGGGCATGCGAGCTCTTTA
CGCTCTCCCCGAAGACATGTTCGGGGAGCCACCGCTAG
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