mRNA_H-elongata_contig20632.5898.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A6H5JH04_9PHAE (CYTOSOL_AP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH04_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 1.400e-21 Identity = 50/73 (68.49%), Postives = 56/73 (76.71%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDR---GGKPPR--WIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
GGAITA LYL+EFVG+K SP GGK + WIHMDFMA+N SRPGRPEGGE+QGMRALYAL ED +G
Sbjct: 598 GGAITAALYLDEFVGEK-ASPSTEEGEGGKKEKLPWIHMDFMAFNTNSRPGRPEGGESQGMRALYALLEDKYG 669
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: D7FXS8_ECTSI (Leucyl aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXS8_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 6.150e-21 Identity = 48/73 (65.75%), Postives = 54/73 (73.97%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKK-----NRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
GGAITA LYL+EFVG+K G + K P WIHMDFMA+N SRPGRPEGGE+QGMRALYAL ED +G
Sbjct: 464 GGAITAALYLDEFVGEKAPPSTEEGEGRKKEKLP-WIHMDFMAFNTNSRPGRPEGGESQGMRALYALLEDKYG 535
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A835YM69_9STRA (Leucyl aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM69_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.760e-20 Identity = 41/68 (60.29%), Postives = 50/68 (73.53%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
GGAITA LYL+EFVG + GD P WIH+DFM +N++S PGRPEGGEA GMRAL+AL + +G
Sbjct: 430 GGAITAALYLDEFVGVPAKEGGDAPAAKPTWIHIDFMGFNRSSSPGRPEGGEAMGMRALHALLRERYG 497
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: F0YS90_AURAN (CYTOSOL_AP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YS90_AURAN) HSP 1 Score: 86.3 bits (212), Expect = 1.220e-18 Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
GGAITA LYL EFV +P D GG PP W+H+D MAYN S+PGRPEGGEA GMRAL+ L E +
Sbjct: 233 GGAITAALYLAEFV----EAPPD-GGAPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALFRLLEARY 294
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S1U8C6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8C6_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.300e-18 Identity = 45/77 (58.44%), Postives = 51/77 (66.23%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGK----KNRSPGDR------GGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
GGAITA LYL EFV K + S GD K P+W+HMD MAYNQ +RPGRPEGGEAQGMRA +AL E +
Sbjct: 479 GGAITAALYLAEFVKKPAANEEESAGDEEDDAEAAPKAPKWLHMDVMAYNQGTRPGRPEGGEAQGMRAFFALLEKKY 555
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S3ZRK0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRK0_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.340e-18 Identity = 41/69 (59.42%), Postives = 47/69 (68.12%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFGE 209
GGAITA LYL EFV P GG P W+H+D MA+N S+PGRPEGGEA GMRAL+ L E FG+
Sbjct: 449 GGAITAALYLAEFV-----EPAAEGGAAPPWLHLDMMAFNTGSKPGRPEGGEAMGMRALFRLLEARFGK 512
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: F0YNB6_AURAN (CYTOSOL_AP domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNB6_AURAN) HSP 1 Score: 86.3 bits (212), Expect = 4.180e-18 Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMF 203
GGAITA LYL EFV +P D GG PP W+H+D MAYN S+PGRPEGGEA GMRAL+ L E +
Sbjct: 418 GGAITAALYLAEFV----EAPPD-GGAPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALFRLLEARY 479
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S4M0M3_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4M0M3_GUITH) HSP 1 Score: 80.5 bits (197), Expect = 5.630e-18 Identity = 38/68 (55.88%), Postives = 46/68 (67.65%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
GGAITA LYL++FV W+HMDFMA+N ASRPGRPEGGEA G+RAL+AL + +G
Sbjct: 56 GGAITAALYLQKFVTAGTD-----------WVHMDFMAFNTASRPGRPEGGEAMGLRALFALIQSKYG 112
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: A0A7S1XE30_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XE30_9RHOD) HSP 1 Score: 78.6 bits (192), Expect = 2.690e-17 Identity = 37/69 (53.62%), Postives = 44/69 (63.77%), Query Frame = 3
Query: 6 GAITAGLYLEEFVGKKNRSPGDRGGKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFGEP 212
GAITA LYL+EF+ K P WIH+DFM YN A+RPGRPEGGEA G+RAL+A + P
Sbjct: 50 GAITAALYLQEFLVKD-----------PTWIHVDFMGYNSAARPGRPEGGEAMGIRALFAFIREFIESP 107
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Match: R1BQN8_EMIHU (CYTOSOL_AP domain-containing protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BQN8_EMIHU) HSP 1 Score: 83.6 bits (205), Expect = 3.990e-17 Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 3
Query: 3 GGAITAGLYLEEFVGKK----NRSPGDRG---GKPPRWIHMDFMAYNQASRPGRPEGGEAQGMRALYALPEDMFG 206
GGAITA LYL EFV + PG+ +PP W+H+D MAYN S+PGRPEGGEA GMRALY L E +G
Sbjct: 456 GGAITAALYLNEFVEAPEDGADGGPGEAAEETAQPPPWLHLDMMAYNTGSKPGRPEGGEAMGMRALYRLIERRWG 530 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20632.5898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20632.5898.1 >prot_H-elongata_contig20632.5898.1 ID=prot_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp TGGPSPPGYTWKNSSERKTGHRETEGGSRRAGSIWTSWPTTRLRGREGPRback to top mRNA from alignment at H-elongata_contig20632:6453..6701- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20632.5898.1 ID=mRNA_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=249bp|location=Sequence derived from alignment at H-elongata_contig20632:6453..6701- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20632:6453..6701- >mRNA_H-elongata_contig20632.5898.1 ID=mRNA_H-elongata_contig20632.5898.1|Name=mRNA_H-elongata_contig20632.5898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig20632:6453..6701- (Himanthalia elongata Himel1 dioecious)back to top |