mRNA_H-elongata_contig206100.5893.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig206100.5893.1
Unique NamemRNA_H-elongata_contig206100.5893.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: D7FTM7_ECTSI (Xylulose kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM7_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 5.770e-19
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            G PLRPSLLWMDMRSAGCAEQ+  TGD AL VNS G GP+SAEWMIPK
Sbjct:   93 GRPLRPSLLWMDMRSAGCAEQVAETGDDALRVNSGGRGPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A6H5K691_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K691_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.570e-18
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            G PLRPSLLWMDMRSAGCAEQ+  TGD AL VNS G GP+SAEWMIPK
Sbjct:   93 GRPLRPSLLWMDMRSAGCAEQVAKTGDDALRVNSGGRGPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A2E1A1E5_9DELT (Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A1E5_9DELT)

HSP 1 Score: 80.1 bits (196), Expect = 3.070e-16
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            GN +RP+L+WMD+RSA  AEQ++ATGDAAL +NS GNGP+SAEWMIPK
Sbjct:   93 GNAVRPALIWMDVRSAKQAEQLVATGDAALCINSNGNGPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A2D6YMJ1_9DELT (Carbohydrate kinase n=1 Tax=SAR324 cluster bacterium TaxID=2024889 RepID=A0A2D6YMJ1_9DELT)

HSP 1 Score: 79.0 bits (193), Expect = 7.860e-16
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            GNPLRP+L+WMDMRSA   EQ+LATGD AL VNS G  P+SAEWMIPK
Sbjct:   93 GNPLRPALIWMDMRSAPQTEQVLATGDLALKVNSNGGXPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A7J7PJ27_9CHLO (Glycerol kinase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PJ27_9CHLO)

HSP 1 Score: 78.2 bits (191), Expect = 1.460e-15
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 DQGNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            + G PLRP+LLWMDMRSA  A Q+ ATGD AL VNS G GP+SAEWM+PK
Sbjct:   91 EAGQPLRPALLWMDMRSAAQAAQVAATGDIALQVNSGGAGPVSAEWMVPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A383W972_TETOB (Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W972_TETOB)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 DQGNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            + G PLRP+LLWMDMRSA  A Q+ ATGD AL VNS G GP+SAEWM+PK
Sbjct:   91 EAGQPLRPALLWMDMRSAAQAAQVAATGDIALQVNSGGAGPVSAEWMVPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A2D4RXY9_9DELT (Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A2D4RXY9_9DELT)

HSP 1 Score: 77.4 bits (189), Expect = 2.750e-15
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            G PLR +L+WMDMRSA   EQ+LATGD AL VNS+G+GP+SAEWMIPK
Sbjct:   93 GKPLRNALIWMDMRSAPQTEQVLATGDPALQVNSSGSGPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A7Z9I5R4_9PROT (Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1224 RepID=A0A7Z9I5R4_9PROT)

HSP 1 Score: 77.4 bits (189), Expect = 2.750e-15
Identity = 34/48 (70.83%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    7 GNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            GNP+RP+L+WMD+RSA  AEQ + TGD AL +NS GNGP+SAEWMIPK
Sbjct:   93 GNPVRPALIWMDVRSAEQAEQSVETGDVALRINSNGNGPVSAEWMIPK 140
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BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A286IAZ0_9HYPH (Ribulose kinase n=1 Tax=Hoeflea halophila TaxID=714899 RepID=A0A286IAZ0_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 3.750e-15
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DQGNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            D GNPLRP+LLWMD+R++  AE +LATGD  L +NS G GP+SAEWMIPK
Sbjct:   89 DDGNPLRPALLWMDVRASSEAEAVLATGDDRLKLNSNGRGPVSAEWMIPK 138
[Close]
BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Match: A0A352RER4_9DELT (Carbohydrate kinase n=13 Tax=root TaxID=1 RepID=A0A352RER4_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 3.760e-15
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 1 
Query:    1 DQGNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK 150
            D GNP+RP+L+WMD+RSA  AEQ++AT D AL +NS G+GP+SAEWMIPK
Sbjct:   91 DSGNPVRPALIWMDVRSAEQAEQMVATEDDALRINSNGSGPVSAEWMIPK 140
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig206100.5893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTM7_ECTSI5.770e-1981.25Xylulose kinase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5K691_9PHAE1.570e-1881.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E1A1E5_9DELT3.070e-1672.92Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1... [more]
A0A2D6YMJ1_9DELT7.860e-1675.00Carbohydrate kinase n=1 Tax=SAR324 cluster bacteri... [more]
A0A7J7PJ27_9CHLO1.460e-1570.00Glycerol kinase n=1 Tax=Scenedesmus sp. NREL 46B-D... [more]
A0A383W972_TETOB1.500e-1570.00Glycerol kinase n=1 Tax=Tetradesmus obliquus TaxID... [more]
A0A2D4RXY9_9DELT2.750e-1572.92Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1... [more]
A0A7Z9I5R4_9PROT2.750e-1570.83Carbohydrate kinase n=3 Tax=Proteobacteria TaxID=1... [more]
A0A286IAZ0_9HYPH3.750e-1568.00Ribulose kinase n=1 Tax=Hoeflea halophila TaxID=71... [more]
A0A352RER4_9DELT3.760e-1568.00Carbohydrate kinase n=13 Tax=root TaxID=1 RepID=A0... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig206100contigH-elongata_contig206100:196..357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.4
Seed ortholog evalue2.2e-15
Seed eggNOG ortholog2880.D7FTM7
Preferred nameXK-RPE
EggNOG free text desc.glycerol kinase activity
EggNOG OGsCOG0554@1,KOG2517@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.7099748-CDS-H-elongata_contig206100:195..3571622930153.7099748-CDS-H-elongata_contig206100:195..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206100 196..357 -
1691679301.660141-CDS-H-elongata_contig206100:195..3571691679301.660141-CDS-H-elongata_contig206100:195..357Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig206100 196..357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig206100.5893.1prot_H-elongata_contig206100.5893.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig206100 196..357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig206100.5893.1

>prot_H-elongata_contig206100.5893.1 ID=prot_H-elongata_contig206100.5893.1|Name=mRNA_H-elongata_contig206100.5893.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
DQGNPLRPSLLWMDMRSAGCAEQILATGDAALVVNSAGNGPISAEWMIPK
VSA*
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mRNA from alignment at H-elongata_contig206100:196..357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig206100.5893.1 ID=mRNA_H-elongata_contig206100.5893.1|Name=mRNA_H-elongata_contig206100.5893.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig206100:196..357- (Himanthalia elongata Himel1 dioecious)
GACCAGGGCAACCCCCTGCGGCCTTCCCTTCTGTGGATGGACATGCGCTC
CGCCGGCTGCGCCGAGCAAATCCTCGCCACCGGAGACGCCGCCCTGGTGG
TGAACTCCGCCGGTAACGGCCCCATATCCGCCGAGTGGATGATTCCGAAG
GTGAGCGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig206100:196..357-

>mRNA_H-elongata_contig206100.5893.1 ID=mRNA_H-elongata_contig206100.5893.1|Name=mRNA_H-elongata_contig206100.5893.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig206100:196..357- (Himanthalia elongata Himel1 dioecious)
GACCAGGGCAACCCCCTGCGGCCTTCCCTTCTGTGGATGGACATGCGCTC
CGCCGGCTGCGCCGAGCAAATCCTCGCCACCGGAGACGCCGCCCTGGTGG
TGAACTCCGCCGGTAACGGCCCCATATCCGCCGAGTGGATGATTCCGAAG
GTGAGCGCGTGAGACCAGGGCAACCCCCTGCGGCCTTCCCTTCTGTGGAT
GGACATGCGCTCCGCCGGCTGCGCCGAGCAAATCCTCGCCACCGGAGACG
CCGCCCTGGTGGTGAACTCCGCCGGTAACGGCCCCATATCCGCCGAGTGG
ATGATTCCGAAGGTGAGCGCGTGA
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