mRNA_H-elongata_contig20600.5886.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20600.5886.1
Unique NamemRNA_H-elongata_contig20600.5886.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: D7FPJ3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPJ3_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 1.520e-31
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELVRARERGYIIK 231
            GI+RCKRCRTYINPYV WLSNGRQWRCNVCG VND PP+Y CHLDQ+G R D+  R EL +ASVE+V   E  Y+++
Sbjct:  230 GIMRCKRCRTYINPYVGWLSNGRQWRCNVCGMVNDTPPSYQCHLDQDGRRSDRAERPELGKASVEMVAPSE--YMVR 304
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A813A2P3_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2P3_SYMMI)

HSP 1 Score: 116 bits (291), Expect = 3.670e-31
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELV 201
            GI+RCKRCRTYINP+VSW+ NGR+WRCN+CG +NDVP +Y  HLDQNG R DK  R ELS+ SVE +
Sbjct:   21 GIVRCKRCRTYINPFVSWVDNGRRWRCNICGMLNDVPTSYFSHLDQNGQRRDKDQRPELSRCSVEFI 87
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A836CAX8_9STRA (Sec23/Sec24 trunk domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAX8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.580e-29
Identity = 47/66 (71.21%), Postives = 55/66 (83.33%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVEL 198
            GI+RCKRCRTYINP+VSW++NGRQWRCNVCG VNDVP +Y CHLD NG R D+  R EL+  SVE+
Sbjct:  190 GIVRCKRCRTYINPFVSWMNNGRQWRCNVCGMVNDVPTSYFCHLDANGMRRDRDQRPELAYGSVEI 255
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A812VPB2_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VPB2_SYMMI)

HSP 1 Score: 116 bits (291), Expect = 1.360e-28
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELV 201
            GI+RCKRCRTYINP+VSW+ NGR+WRCN+CG +NDVP +Y  HLDQNG R DK  R ELS+ SVE +
Sbjct:  114 GIVRCKRCRTYINPFVSWVDNGRRWRCNICGMLNDVPTSYFSHLDQNGQRRDKDQRPELSRCSVEFI 180
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A7R9ZHV8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZHV8_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.320e-27
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELVRARERGYIIK 231
            GIIRCKRCRTYIN +V+WL NGR+WRCN+C  +N+ P  Y CHLD +G+R DK  R ELS++ VE V   E  Y+++
Sbjct:   40 GIIRCKRCRTYINAFVTWLENGRRWRCNICAQLNECPSAYFCHLDNDGTRRDKLQRPELSESVVEFVAPSE--YMVR 114
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A7S2W394_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W394_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.780e-27
Identity = 43/66 (65.15%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVEL 198
            GIIRC+RCRTYINP+VSW++NGRQWRCN+CG+VN+VP +Y CHL+ +G+R D+  R EL + SVE+
Sbjct:  181 GIIRCRRCRTYINPFVSWVNNGRQWRCNICGYVNEVPQSYFCHLNTDGTRKDRNERPELCKGSVEI 246
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A8J2SWF0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SWF0_9STRA)

HSP 1 Score: 112 bits (281), Expect = 3.200e-27
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELV 201
            GI+RCK+CR Y+NP+V+W++NGRQWRCNVCGF NDVP +Y C LD+ G R D+  R ELS+ SVELV
Sbjct:  517 GIVRCKKCRAYVNPFVAWVNNGRQWRCNVCGFSNDVPNSYFCQLDERGRRRDRDQRPELSKGSVELV 583
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A7S4D505_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D505_HETAK)

HSP 1 Score: 112 bits (279), Expect = 5.790e-27
Identity = 44/67 (65.67%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELV 201
            GI+RCKRCRTYINP+VSW+ NGR+WRCN+CG VN+VP  Y CHLD +G R D+  R EL + SVE V
Sbjct:   39 GIVRCKRCRTYINPFVSWVENGRRWRCNMCGMVNEVPTAYFCHLDADGQRRDREQRPELCKGSVEFV 105
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: F0YAP0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAP0_AURAN)

HSP 1 Score: 111 bits (277), Expect = 1.120e-26
Identity = 46/68 (67.65%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLD-QNGSRLDKPHRAELSQASVELV 201
            GI+RCK+CR Y+NP+VSW++NGRQWRCNVCGFVNDVP +Y C LD + G R DK  R EL + SVELV
Sbjct:  978 GIVRCKKCRAYVNPFVSWVNNGRQWRCNVCGFVNDVPNSYFCQLDPETGERRDKQQRPELCKGSVELV 1045
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BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Match: A0A7S1B7Z2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B7Z2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.700e-26
Identity = 43/77 (55.84%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSRLDKPHRAELSQASVELVRARERGYIIK 231
            GI+RCK CRTYINP+V+W+ NGR+WRCN+CG +NDVP  Y CHLD+ G R D   R E+S+A VE +   E  Y+++
Sbjct:  200 GIVRCKSCRTYINPFVNWIENGRRWRCNICGVLNDVPSAYFCHLDEQGRRRDADTRPEISEAVVEYIAPAE--YMVR 274
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20600.5886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPJ3_ECTSI1.520e-3168.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A813A2P3_SYMMI3.670e-3168.66Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
A0A836CAX8_9STRA5.580e-2971.21Sec23/Sec24 trunk domain-containing protein n=1 Ta... [more]
A0A812VPB2_SYMMI1.360e-2868.66Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A7R9ZHV8_9STRA1.320e-2757.14Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2W394_9STRA1.780e-2765.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A8J2SWF0_9STRA3.200e-2765.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S4D505_HETAK5.790e-2765.67Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
F0YAP0_AURAN1.120e-2667.65Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1B7Z2_9STRA9.700e-2655.84Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20600contigH-elongata_contig20600:175..417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.2e-26
Seed eggNOG ortholog2880.D7FPJ3
Preferred nameSEC24B
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0002376,GO:0002474,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006914,GO:0006996,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009889,GO:0009987,GO:0010556,GO:0010869,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0022607,GO:0030117,GO:0030120,GO:0030127,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033218,GO:0034613,GO:0034622,GO:0035459,GO:0042175,GO:0042277,GO:0042592,GO:0042632,GO:0042886,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045714,GO:0046872,GO:0046907,GO:0046914,GO:0048002,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048475,GO:0048518,GO:0048522,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051246,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0055088,GO:0055092,GO:0060255,GO:0061024,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070971,GO:0071702,GO:0071705,GO:0071840,GO:0080090,GO:0090087,GO:0090110,GO:0090114,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:1903530,GO:1903532,GO:1904951
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1985@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size243
Cds size243
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930153.0248868-CDS-H-elongata_contig20600:174..4171622930153.0248868-CDS-H-elongata_contig20600:174..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20600 175..417 -
1691679301.4108188-CDS-H-elongata_contig20600:174..4171691679301.4108188-CDS-H-elongata_contig20600:174..417Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20600 175..417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20600.5886.1prot_H-elongata_contig20600.5886.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20600 175..417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20600.5886.1

>prot_H-elongata_contig20600.5886.1 ID=prot_H-elongata_contig20600.5886.1|Name=mRNA_H-elongata_contig20600.5886.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=81bp
GIIRCKRCRTYINPYVSWLSNGRQWRCNVCGFVNDVPPTYMCHLDQNGSR
LDKPHRAELSQASVELVRARERGYIIKKIR*
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mRNA from alignment at H-elongata_contig20600:175..417-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20600.5886.1 ID=mRNA_H-elongata_contig20600.5886.1|Name=mRNA_H-elongata_contig20600.5886.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=243bp|location=Sequence derived from alignment at H-elongata_contig20600:175..417- (Himanthalia elongata Himel1 dioecious)
GGCATCATTCGGTGCAAGCGGTGCCGTACCTACATAAACCCGTACGTGAG
CTGGCTCAGCAACGGTCGTCAGTGGCGGTGCAATGTGTGCGGCTTTGTGA
ACGATGTCCCTCCGACGTATATGTGCCACCTAGATCAGAATGGTTCCAGG
CTGGACAAGCCGCATCGTGCTGAGCTCAGCCAGGCTAGCGTGGAGCTGGT
AAGAGCCCGAGAAAGGGGGTATATCATTAAAAAAATACGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig20600:175..417-

>mRNA_H-elongata_contig20600.5886.1 ID=mRNA_H-elongata_contig20600.5886.1|Name=mRNA_H-elongata_contig20600.5886.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=486bp|location=Sequence derived from alignment at H-elongata_contig20600:175..417- (Himanthalia elongata Himel1 dioecious)
GGCATCATTCGGTGCAAGCGGTGCCGTACCTACATAAACCCGTACGTGAG
CTGGCTCAGCAACGGTCGTCAGTGGCGGTGCAATGTGTGCGGCTTTGTGA
ACGATGTCCCTCCGACGTATATGTGCCACCTAGATCAGAATGGTTCCAGG
CTGGACAAGCCGCATCGTGCTGAGCTCAGCCAGGCTAGCGTGGAGCTGGT
AAGAGCCCGAGAAAGGGGGTATATCATTAAAAAAATACGGTAGGGCATCA
TTCGGTGCAAGCGGTGCCGTACCTACATAAACCCGTACGTGAGCTGGCTC
AGCAACGGTCGTCAGTGGCGGTGCAATGTGTGCGGCTTTGTGAACGATGT
CCCTCCGACGTATATGTGCCACCTAGATCAGAATGGTTCCAGGCTGGACA
AGCCGCATCGTGCTGAGCTCAGCCAGGCTAGCGTGGAGCTGGTAAGAGCC
CGAGAAAGGGGGTATATCATTAAAAAAATACGGTAG
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