mRNA_H-elongata_contig20585.5878.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20585.5878.1
Unique NamemRNA_H-elongata_contig20585.5878.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20585.5878.1 vs. uniprot
Match: A0A6H5L7S3_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S3_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 2.290e-34
Identity = 149/335 (44.48%), Postives = 180/335 (53.73%), Query Frame = 2 
Query:  953 GEGRSDLERGDAAASSGGRV-FG--------EPLGIGSWGTMATARVVTAGSSSNRRR-----RAAPRLERSRGESLQRSLERVMEEKSAMASERESLLEELQRAREVALEREGQMAGQEVQTDVLKMEVNALEMELRRARQELVASKAGRKEFQQAAKRDPAGGGRDAASLSLLLQRERENAARERDAGLTKTKAATRAADEARSALTLAE-------RRAVTAEEKASAEGERRKVEAAAAKEAAGEAAAALCRERERREIKVRERDEEIAALTLRVEASEGRARRIAENKEAXXXXXXXTTMKSLEAAERRRLEMEKNASSVAARLRERDSE 1894
            G G SD+ R      SG R  FG        E LG  SWG+ AT   +   ++  R       R  P L+ SRGESLQRSL   +E+K A+A+ERE LLEELQRARE  LER+G +AGQEVQTDVLKMEV AL+ ELRRARQEL A +AGR+E  +AAKRD A   RDAA                          A                      RRA +AE +A    E  +        AA EA+ AL RERE         +EEI+AL LRV ASE R+RR++E+K           +KSLEAAERRR E E  AS++AARLRER++E
Sbjct:  501 GGGESDVRREPERERSGVRASFGGGSRLASRESLGS-SWGSFATTGRMGTATAGGRAAGGGLYRGRP-LDGSRGESLQRSLAEALEDKRALAAEREWLLEELQRAREATLERDGALAGQEVQTDVLKMEVAALDGELRRARQELGACEAGRRELHEAAKRDLARRDRDAAXXXXXXXXXXXXXXXXXXXXXXXAATAXXXXXXXXXXXXXXXXXXXXXXRRAESAEARAXXXXEXLEXXXXXXXXAAVEASGALRREREXXXXXXXXXEEEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAE 833
[Close]
BLAST of mRNA_H-elongata_contig20585.5878.1 vs. uniprot
Match: D7G3L4_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3L4_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 7.140e-32
Identity = 146/332 (43.98%), Postives = 179/332 (53.92%), Query Frame = 2 
Query:  953 GEGRSDLERGDA---AASSGGRVFGEPLGIGS-WGTMATARVVTAGSSSNRRR-----RAAPRLERSRGESLQRSLERVMEEKSAMASERESLLEELQRAREVALEREGQMAGQEVQTDVLKMEVNALEMELRRARQELVASKAGRKEFQQAAKRDPAGGGRDAASLSLLLQRERENAARERDAGLTKTKAATRA----ADEARSALTLAE-----RRAVTAEEKASAEGERRKVEAAAAKEAAGEAAAALCRERERREIKVRERDEEIAALTLRVEASEGRARRIAENKEAXXXXXXXTTMKSLEAAERRRLEMEKNASSVAARLRERDSE 1894
            G+ R + ERG +   A   GG        +GS WG+ AT   + A ++  R       R  P L+ SRGESLQRSL   ME+K A+A+ER+ LLEELQRARE  LER+G +AGQEVQTDVLKMEV AL+ ELRRARQEL A +AGR+E  +AAKRD A   RDAA LS  L+       R+R A      AAT      AD+              RRA + E                           L RE            EEI+AL LRV ASE R+RR++E+K           +KSLEAAERRR E E  AS++AARLRER++E
Sbjct:  511 GDARREPERGRSGVPAGYGGGARLASRESLGSSWGSCATTGRMGAATAGGRAAGGGLYRGRP-LDGSRGESLQRSLAEAMEDKRALAAERDWLLEELQRAREATLERDGALAGQEVQTDVLKMEVAALDGELRRARQELGACEAGRRELHEAAKRDLARRDRDAADLSDALRXXXXX--RDRXADAAAAAAATXXXXXXADKXXXXXXXXXXXXXXRRAESTEXXXXXXXXXXXXXXXXXXXXXXXXXXXLRREXXXXXXXXXXXXEEISALLLRVGASESRSRRLSEDKAERLREVEEAAVKSLEAAERRRAEWENKASAIAARLREREAE 839
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20585.5878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7S3_9PHAE2.290e-3444.48PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3L4_ECTSI7.140e-3243.98PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20585contigH-elongata_contig20585:1148..6180 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionPDZ domain
Ec32 orthologEc-00_006610.1
Exons8
Model size1894
Cds size1491
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.4095185-UTR-H-elongata_contig20585:1147..13741622930152.4095185-UTR-H-elongata_contig20585:1147..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 1148..1374 +
1691679301.1583688-UTR-H-elongata_contig20585:1147..13741691679301.1583688-UTR-H-elongata_contig20585:1147..1374Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 1148..1374 +
1622930152.4242227-UTR-H-elongata_contig20585:1717..18441622930152.4242227-UTR-H-elongata_contig20585:1717..1844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 1718..1844 +
1691679301.166973-UTR-H-elongata_contig20585:1717..18441691679301.166973-UTR-H-elongata_contig20585:1717..1844Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 1718..1844 +
1622930152.4388294-UTR-H-elongata_contig20585:2045..20941622930152.4388294-UTR-H-elongata_contig20585:2045..2094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 2046..2094 +
1691679301.1763496-UTR-H-elongata_contig20585:2045..20941691679301.1763496-UTR-H-elongata_contig20585:2045..2094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20585 2046..2094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.4602942-CDS-H-elongata_contig20585:2094..28591622930152.4602942-CDS-H-elongata_contig20585:2094..2859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 2095..2859 +
1691679301.1836069-CDS-H-elongata_contig20585:2094..28591691679301.1836069-CDS-H-elongata_contig20585:2094..2859Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 2095..2859 +
1622930152.473138-CDS-H-elongata_contig20585:3248..33111622930152.473138-CDS-H-elongata_contig20585:3248..3311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 3249..3311 +
1691679301.1909614-CDS-H-elongata_contig20585:3248..33111691679301.1909614-CDS-H-elongata_contig20585:3248..3311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 3249..3311 +
1622930152.4839861-CDS-H-elongata_contig20585:3625..37631622930152.4839861-CDS-H-elongata_contig20585:3625..3763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 3626..3763 +
1691679301.2007952-CDS-H-elongata_contig20585:3625..37631691679301.2007952-CDS-H-elongata_contig20585:3625..3763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 3626..3763 +
1622930152.4948063-CDS-H-elongata_contig20585:4157..44691622930152.4948063-CDS-H-elongata_contig20585:4157..4469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 4158..4469 +
1691679301.212607-CDS-H-elongata_contig20585:4157..44691691679301.212607-CDS-H-elongata_contig20585:4157..4469Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 4158..4469 +
1622930152.510718-CDS-H-elongata_contig20585:4907..50081622930152.510718-CDS-H-elongata_contig20585:4907..5008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 4908..5008 +
1691679301.2203422-CDS-H-elongata_contig20585:4907..50081691679301.2203422-CDS-H-elongata_contig20585:4907..5008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 4908..5008 +
1622930152.529956-CDS-H-elongata_contig20585:6068..61801622930152.529956-CDS-H-elongata_contig20585:6068..6180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 6069..6180 +
1691679301.2280014-CDS-H-elongata_contig20585:6068..61801691679301.2280014-CDS-H-elongata_contig20585:6068..6180Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20585 6069..6180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20585.5878.1prot_H-elongata_contig20585.5878.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20585 2095..6180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20585.5878.1

>prot_H-elongata_contig20585.5878.1 ID=prot_H-elongata_contig20585.5878.1|Name=mRNA_H-elongata_contig20585.5878.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=497bp
MLLLPLFFVLLGPLTLDRPPSSGLPSFVVSSRREDKQDARAGGHHNRREE
RSNGDGSGSSSSRKKNKRLDADQERKSFPAAAGRGPAEREHRANGSASAS
GGDGYDAGGTQGKKSTRCRYRPSSGSSTASAFLDDREGSSARRSARASRP
SGVEGDPLPSSRRLHAFERGGGSAPGEDMSGGLGEGRSDLERGDAAASSG
GRVFGEPLGIGSWGTMATARVVTAGSSSNRRRRAAPRLERSRGESLQRSL
ERVMEEKSAMASERESLLEELQRAREVALEREGQMAGQEVQTDVLKMEVN
ALEMELRRARQELVASKAGRKEFQQAAKRDPAGGGRDAASLSLLLQRERE
NAARERDAGLTKTKAATRAADEARSALTLAERRAVTAEEKASAEGERRKV
EAAAAKEAAGEAAAALCRERERREIKVRERDEEIAALTLRVEASEGRARR
IAENKEARIREVEETTMKSLEAAERRRLEMEKNASSVAARLRERDSE
back to top

mRNA from alignment at H-elongata_contig20585:1148..6180+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20585.5878.1 ID=mRNA_H-elongata_contig20585.5878.1|Name=mRNA_H-elongata_contig20585.5878.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5033bp|location=Sequence derived from alignment at H-elongata_contig20585:1148..6180+ (Himanthalia elongata Himel1 dioecious)
GTCGCGTTCAAGCCCGGGTCGCTCGGGCTCGAGCTCGAGGCCATTGTGGA
CGAAGATGCGTCAGCTGCGAAGAAGCACGCCTCGGCGCGAAGCCCATCGG
AAAAGAGAAGGAAAGGGCGAAGAGGAGGAGGACGCCTCGGCTGCAGAGTC
TTCCGGGTGACTCCTGACGGTCAGGCCGCGAGCCACGGCAACATACACCC
GGGAGATGCGCTCGTTGTGCTGGATGGGTGAGCAAATCTGAACCTCTGTA
TTGCAAACGATCGACATCTAGAGGGCGCCGCGGAATCGTGTGCATAGGGT
ACCGGTACCAGAGCACGCACGATCGACTGTTCAACGCTAGGATCATGCAG
TCGTACCGGTACGGTAGGCGTCGTAGGTCTTCGCAAGCTGTACGAAAGTC
GCACTCAACCCTCCTGTACAGGTATCGATCTCCCACGATGTTGTTCTTAC
AAGTTTGTAGAGCCTGCACGACAGCCTTATCCTCTGCTTCTGCGTACTCT
TTTTTGCCATCACGTCTCTGCATTGTTGCACCTATATGTGCGCGGTTTTT
ATTGTACTTTTTCGCGTCAGGGTCGAGGTCCTCGCCGAACCGTTCGATGT
AATCACTGGGGAACTGCTGGAGCGCCGCGGCCAGCGCAGACTGATAGGGT
TCATGGGTGCCGCCGATGTCGCCGCGGCCCCGACCGGTTTGTTTTACGTA
CAAAAATAATTGCGCGCCGAAGTACCAAGTATATCCTACCGTACACGTTG
TGTCTTCAAAGGAGGCTTTTTGTGATGCCTTTATCCGATGGGAGGCGATC
GAAGTAGACCCAGACCACTTTGATCCTGGAGGGCGCACATGTGCAAACGT
GCCCTGAACGGCCTACGTCGGACACCTCTTGCCCGGATGGCCTGAAAGAC
GCCTTCAACCTCGCGTAAAGCTCCTCTGATTTGTCTCACTGTTGTTCATG
CTGTTGCTACCGCTGTTTTTTGTGCTTCTCGGCCCACTTACGCTGGACCG
GCCACCATCCTCAGGACTTCCTTCTTTTGTCGTTTCCTCCCGACGCGAGG
ATAAACAAGACGCCCGTGCAGGTGGACACCACAACCGAAGAGAAGAACGC
AGTAACGGGGATGGCAGTGGCAGCAGCAGCAGCAGAAAAAAGAACAAACG
TCTTGACGCCGACCAAGAAAGGAAAAGCTTTCCGGCGGCGGCGGGAAGAG
GTCCTGCCGAACGAGAACACCGCGCCAATGGCAGCGCCTCAGCAAGCGGT
GGTGATGGATACGACGCGGGGGGCACGCAGGGTAAAAAATCTACCCGTTG
TCGATACCGCCCCTCTTCCGGCTCGTCCACCGCCTCTGCTTTCCTCGACG
ACCGAGAAGGGAGCAGCGCCCGACGTAGCGCCCGCGCGTCGCGGCCCTCG
GGTGTCGAAGGCGATCCGCTGCCGTCCTCGCGACGCCTGCACGCGTTTGA
ACGCGGTGGTGGCAGCGCCCCAGGTGAGGACATGAGCGGCGGCCTTGGGG
AAGGTCGCTCGGATCTGGAACGTGGCGATGCCGCCGCGTCCAGCGGTGGG
CGCGTCTTCGGCGAGCCGCTAGGCATCGGGAGCTGGGGTACAATGGCGAC
CGCGAGAGTAGTGACGGCGGGTAGCAGCAGCAACCGCCGCCGTCGTGCCG
CGCCGCGGTTGGAGAGGTCAAGGGGGGAGTCTCTCCAGAGAAGCCTGGAG
AGAGTCATGGAGGTTAGGGAAGGCGTGGCTCGTCGGCTTGCTCACGTACG
CATATTCATTTCACTCGTATCTCATCGTTACCACCGGCAGCCTAATAAGA
GGCGTTTTTTTTATTGGAAAGGATTGGAACGGGGTAAGATTATATCAGCT
TGATATTCTCGTATCCTTCCTATCTCATGTGTCTTCTAATTTAAAAGAGT
TGTGTAGGAGGTTATCGATAACATCTCGTACAGTTCAAGACTTTGACGAA
TTCCAGTGCGAATTCATCCAACACACCTATCCCATTTCTGCAGGGACGAT
GGCTTTTTGTAAAAGGTGAAGCTCCACACCACCGATTCGTTCGCTAATTG
TAGCAATGCCCCGTAATATCTCTCTCCTATCCCGCATTCACTACGGAATA
GGAAAAAAGCGCGATGGCTTCCGAGAGAGAGTCGCTTTTGGAAGAACTCC
AGCGAGCCCGAGAGGTGATCATTGTGGTGTCGTTCTTAACGTCTTGGTGG
CAGTCGGGGACGGGGTGGGGTCGGGGGGACGGGGGGGGGGGCGGGGGGGG
GGGGCGCACGGAGAGTATTGGCAGCAAAACTCTCTATTCGTATTCGATGT
TTGTTCCCCGACAGAGTCAGTCGGGAAGGATATAATGTCGACTTCGGCCT
ACTGTCGCACGGCGCTATCGGGTTTGTTAACAAACGACAACCTCTTGTAG
AAACCCCGTGATAAATTCCTCTGGATTGTTGAAATTTGTGCCGTGCATCC
GTGCGTACTTTGTATCTCGGTTCTTCAGGTAGCCCTTGAAAGAGAAGGGC
AGATGGCCGGGCAGGAAGTGCAGACCGACGTGCTCAAAATGGAGGTCAAC
GCACTGGAGATGGAGCTGCGCCGCGCGCGGCAGGAACTCGTGGCTTCCAA
GGCTGGGCGTAAGGAGGTGGGGATTCCCTCGGTCAAGGAGAAGTTGGGAC
GGGGGGAGGTGGGGGGGGGTAAGGGGATCAAAAGCATCGGACCNNNNNNN
NNNGGGGGGGCGGGGGGGGTTCGGGGGGGGGGGGGAGGGGGGGGGGGATT
CCGGGGAGAAAGGGGAAGGGGGGGGGGGGGGGGGGGGGGGGGGGGTAAGG
GGATCAAAAGCATCGGACCCCGGTAGAGGTGTTTCAGCGCAATATAGCGG
ATAGGCTCTGACAACGCCCCCTCCTGTGTCACCATCCAGCCCCATAAATC
GGTAAAAATACCCCTTGCCGCTGCCTTTTTCCCTGTCGCTGTTTACATTA
TTTTATTTGTCGGCCGGAAAAAAAAAAAACTATCGTTCTCGCTTGTTCGT
GGGGAGCAAGTTTCAACAAGCCGCGAAGCGCGACCCGGCCGGGGGGGGCA
GAGACGCGGCCTCACTGTCCTTGCTCCTACAGCGCGAGCGTGAGAATGCG
GCGCGGGAACGTGACGCCGGATTGACTAAAACGAAGGCGGCGACAAGGGC
GGCCGACGAGGCACGGTCCGCGTTGACTTTAGCGGAGCGGCGCGCGGTCA
CCGCCGAGGAAAAGGCTTCGGCGGAGGGGGAAAGAAGGAAGGTGGAAGCG
GCAGCCGCTAAGGAGGCGGCGGGGGAAGCGGCGGCGGCGTTATGCAGGGA
GCGGGAGCGGAGGGAGATAAAGGTCATTATTGGGGTTGTAGATGGTTGGT
GGGGGGGAGGGGGCATTGAGGCCGCGGGGAGGGGAGAATTAGTCGAGTTT
TCGGCCAGAGAAAAGTGCTCAACCTGGCGTCGTCGTATCTTCTGAGGGGC
TTACGTCGGAAACCTTATGAAATGGATTAGAGGATATATATATATATATA
TATATGTGTGATTGGGCGGTGTGTAGAAGCTCAAGCGAGGTGCACCGTAC
CTGTGGAGTGTGGTCTCATCACTATCGTGCCGATGTAAAAAGGAAGGGCG
ATGCGGTATAAAAATATTATTTTCGATTAGATTTTAAAAAAAACGACGCG
TTCGTCAGTTGATTAACTGGTTGCTCCTTGGGTCGGTCGATCGATTGATT
GATCGGTGGATCGATCGACCAATCCGACACGTGGTGGTTTTGCTGTTCAT
GGTGTCTCAGGTCCGCGAGCGGGATGAAGAAATCGCGGCGCTGACGCTGA
GGGTGGAGGCCTCCGAGGGTCGCGCGAGAAGGATCGCCGAGAATAAAGAA
GCTCGGATCAGGTCAAAATATGAAGGGCGAATAATGTATTACTCTGCTCT
GTGTTATTAACAGGAGATACATATCCTCGGAAAACGCGCGCGTGTAAGAA
AGGGAGACAGGGACATAGACAGAGACAAAGAAGGAATAAAAAGGGCGCAC
GGGGTGGGGTGGGGGAAAGGAGCATGTATCAGATGAGATGAAGTTGTTGT
TTTTTAGTCCGGGTAGCTAATAAATTTAGCTGAACGTGAATGAGGAGCCT
CTCGGGGCTATATAGCAGCAGCGCGAGGGTAAAGAGCAAAAGGAGACCAG
ATCTGATTGGATTACGGACGTTGATGGGCACGCTCCAGCGCAGAATAGGT
AGATGAGATAGCGTGCGTGGTGGGGCTATAATAGGTTTTGTATAGAGCCC
ACGGGACGTGCCCGCGACGACATCTCTATGGTTATGGTTATTGTACGTGT
GCAGTCAGTAGCAGTCGATAGTAGCAGCCGCTGTTGTTGCGTTTTCTAGA
GCGCGGGAGAAGCATCGAAGGAGAGAGAAAGATAGAGAAGTGGCCTATCC
AACGCAATACACCAGGAAACGCCTCCGAGATCGGTCAAAAATTACAGATC
CCTAAGGGTGTTTCAGCATTACCCACGAGCTGTTCTATCTCCAATTTTCG
AGTTCCTAGCGTAAACAGCTTTTTCACGTGCCAAGATCCTCATTCAACCT
TGAGACAAAAATTGTCGCCACGGCTTATTTTTTGTTTTCGTTTTTTTAAT
CGTGGTTCCGCCTGCGCTAAACTTGCCCCCCTAAAAATGTACCCACCTCC
CGGGTTTCCAGCTCGATCGTCAACTTTTAAGCATGATAAACTAAGCCCTC
AAGCTCCACGCTCTCGTCAAAAGACCCCGCAATTCGTGTCGTACAGCAGA
GGAAGGGGATTGGTGGGGGGGAGGGAGGGAGGAGGTGCCAGGGTTATTAT
TGGCGTTTTCGTCGGGGTAGTTGTAATGGTTGGGTTTTTTTGCGGTTTTG
CTTTTTATTTTGCTCCTTTTCGTCATTTAATCACAAAACCCACACCGCAC
TCGAACTATCCCTAAACCAAGGGAGGTGGAAGAGACGACGATGAAGTCCC
TCGAGGCGGCCGAGCGGCGGCGATTGGAAATGGAAAAAAACGCCTCCTCG
GTAGCAGCGCGGTTGAGGGAACGGGACTCCGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20585:1148..6180+

>mRNA_H-elongata_contig20585.5878.1 ID=mRNA_H-elongata_contig20585.5878.1|Name=mRNA_H-elongata_contig20585.5878.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2982bp|location=Sequence derived from alignment at H-elongata_contig20585:1148..6180+ (Himanthalia elongata Himel1 dioecious)
ATGCTGTTGCTACCGCTGTTTTTTGTGCTTCTCGGCCCACTTACGCTGGA
CCGGCCACCATCCTCAGGACTTCCTTCTTTTGTCGTTTCCTCCCGACGCG
AGGATAAACAAGACGCCCGTGCAGGTGGACACCACAACCGAAGAGAAGAA
CGCAGTAACGGGGATGGCAGTGGCAGCAGCAGCAGCAGAAAAAAGAACAA
ACGTCTTGACGCCGACCAAGAAAGGAAAAGCTTTCCGGCGGCGGCGGGAA
GAGGTCCTGCCGAACGAGAACACCGCGCCAATGGCAGCGCCTCAGCAAGC
GGTGGTGATGGATACGACGCGGGGGGCACGCAGGGTAAAAAATCTACCCG
TTGTCGATACCGCCCCTCTTCCGGCTCGTCCACCGCCTCTGCTTTCCTCG
ACGACCGAGAAGGGAGCAGCGCCCGACGTAGCGCCCGCGCGTCGCGGCCC
TCGGGTGTCGAAGGCGATCCGCTGCCGTCCTCGCGACGCCTGCACGCGTT
TGAACGCGGTGGTGGCAGCGCCCCAGGTGAGGACATGAGCGGCGGCCTTG
GGGAAGGTCGCTCGGATCTGGAACGTGGCGATGCCGCCGCGTCCAGCGGT
GGGCGCGTCTTCGGCGAGCCGCTAGGCATCGGGAGCTGGGGTACAATGGC
GACCGCGAGAGTAGTGACGGCGGGTAGCAGCAGCAACCGCCGCCGTCGTG
CCGCGCCGCGGTTGGAGAGGTCAAGGGGGGAGTCTCTCCAGAGAAGCCTG
GAGAGAGTCATGGAGATGCTGTTGCTACCGCTGTTTTTTGTGCTTCTCGG
CCCACTTACGCTGGACCGGCCACCATCCTCAGGACTTCCTTCTTTTGTCG
TTTCCTCCCGACGCGAGGATAAACAAGACGCCCGTGCAGGTGGACACCAC
AACCGAAGAGAAGAACGCAGTAACGGGGATGGCAGTGGCAGCAGCAGCAG
CAGAAAAAAGAACAAACGTCTTGACGCCGACCAAGAAAGGAAAAGCTTTC
CGGCGGCGGCGGGAAGAGGTCCTGCCGAACGAGAACACCGCGCCAATGGC
AGCGCCTCAGCAAGCGGTGGTGATGGATACGACGCGGGGGGCACGCAGGG
TAAAAAATCTACCCGTTGTCGATACCGCCCCTCTTCCGGCTCGTCCACCG
CCTCTGCTTTCCTCGACGACCGAGAAGGGAGCAGCGCCCGACGTAGCGCC
CGCGCGTCGCGGCCCTCGGGTGTCGAAGGCGATCCGCTGCCGTCCTCGCG
ACGCCTGCACGCGTTTGAACGCGGTGGTGGCAGCGCCCCAGGTGAGGACA
TGAGCGGCGGCCTTGGGGAAGGTCGCTCGGATCTGGAACGTGGCGATGCC
GCCGCGTCCAGCGGTGGGCGCGTCTTCGGCGAGCCGCTAGGCATCGGGAG
CTGGGGTACAATGGCGACCGCGAGAGTAGTGACGGCGGGTAGCAGCAGCA
ACCGCCGCCGTCGTGCCGCGCCGCGGTTGGAGAGGTCAAGGGGGGAGTCT
CTCCAGAGAAGCCTGGAGAGAGTCATGGAGGAAAAAAGCGCGATGGCTTC
CGAGAGAGAGTCGCTTTTGGAAGAACTCCAGCGAGCCCGAGAGGAAAAAA
GCGCGATGGCTTCCGAGAGAGAGTCGCTTTTGGAAGAACTCCAGCGAGCC
CGAGAGGTAGCCCTTGAAAGAGAAGGGCAGATGGCCGGGCAGGAAGTGCA
GACCGACGTGCTCAAAATGGAGGTCAACGCACTGGAGATGGAGCTGCGCC
GCGCGCGGCAGGAACTCGTGGCTTCCAAGGCTGGGCGTAAGGAGGTAGCC
CTTGAAAGAGAAGGGCAGATGGCCGGGCAGGAAGTGCAGACCGACGTGCT
CAAAATGGAGGTCAACGCACTGGAGATGGAGCTGCGCCGCGCGCGGCAGG
AACTCGTGGCTTCCAAGGCTGGGCGTAAGGAGTTTCAACAAGCCGCGAAG
CGCGACCCGGCCGGGGGGGGCAGAGACGCGGCCTCACTGTCCTTGCTCCT
ACAGCGCGAGCGTGAGAATGCGGCGCGGGAACGTGACGCCGGATTGACTA
AAACGAAGGCGGCGACAAGGGCGGCCGACGAGGCACGGTCCGCGTTGACT
TTAGCGGAGCGGCGCGCGGTCACCGCCGAGGAAAAGGCTTCGGCGGAGGG
GGAAAGAAGGAAGGTGGAAGCGGCAGCCGCTAAGGAGGCGGCGGGGGAAG
CGGCGGCGGCGTTATGCAGGGAGCGGGAGCGGAGGGAGATAAAGTTTCAA
CAAGCCGCGAAGCGCGACCCGGCCGGGGGGGGCAGAGACGCGGCCTCACT
GTCCTTGCTCCTACAGCGCGAGCGTGAGAATGCGGCGCGGGAACGTGACG
CCGGATTGACTAAAACGAAGGCGGCGACAAGGGCGGCCGACGAGGCACGG
TCCGCGTTGACTTTAGCGGAGCGGCGCGCGGTCACCGCCGAGGAAAAGGC
TTCGGCGGAGGGGGAAAGAAGGAAGGTGGAAGCGGCAGCCGCTAAGGAGG
CGGCGGGGGAAGCGGCGGCGGCGTTATGCAGGGAGCGGGAGCGGAGGGAG
ATAAAGGTCCGCGAGCGGGATGAAGAAATCGCGGCGCTGACGCTGAGGGT
GGAGGCCTCCGAGGGTCGCGCGAGAAGGATCGCCGAGAATAAAGAAGCTC
GGATCAGGTCCGCGAGCGGGATGAAGAAATCGCGGCGCTGACGCTGAGGG
TGGAGGCCTCCGAGGGTCGCGCGAGAAGGATCGCCGAGAATAAAGAAGCT
CGGATCAGGGAGGTGGAAGAGACGACGATGAAGTCCCTCGAGGCGGCCGA
GCGGCGGCGATTGGAAATGGAAAAAAACGCCTCCTCGGTAGCAGCGCGGT
TGAGGGAACGGGACTCCGAGGGAGGTGGAAGAGACGACGATGAAGTCCCT
CGAGGCGGCCGAGCGGCGGCGATTGGAAATGGAAAAAAACGCCTCCTCGG
TAGCAGCGCGGTTGAGGGAACGGGACTCCGAG
back to top