mRNA_H-elongata_contig205843.5877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig205843.5877.1
Unique NamemRNA_H-elongata_contig205843.5877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig205843.5877.1 vs. uniprot
Match: D8LKA3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKA3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.910e-7
Identity = 48/110 (43.64%), Postives = 52/110 (47.27%), Query Frame = 1 
Query:  127 GDRLGGIPSAMKTVKRENGVMHLSPSAANGVDP---------------STPKDALAAELWAWLGGVGVGR-VCGADRSMRSYADAGGAGGVRSAXXXXXXGEWRGAFTNR 408
            GDRLGGIPSA  +                                   + PKDALA+ELWAWLGGVG GR  C ADR   S +   G       XXXXX GEWRGAF NR
Sbjct:  106 GDRLGGIPSASISTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPKDALASELWAWLGGVGSGRRSCSADRPKCSSSPRSGX----XXXXXXXSGEWRGAFYNR 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig205843.5877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKA3_ECTSI7.910e-743.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig205843contigH-elongata_contig205843:506..994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_009520.1
Exons2
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930152.3509014-CDS-H-elongata_contig205843:505..8491622930152.3509014-CDS-H-elongata_contig205843:505..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205843 506..849 -
1691679301.1433678-CDS-H-elongata_contig205843:505..8491691679301.1433678-CDS-H-elongata_contig205843:505..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205843 506..849 -
1622930152.3670564-CDS-H-elongata_contig205843:930..9941622930152.3670564-CDS-H-elongata_contig205843:930..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205843 931..994 -
1691679301.1508393-CDS-H-elongata_contig205843:930..9941691679301.1508393-CDS-H-elongata_contig205843:930..994Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig205843 931..994 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig205843.5877.1prot_H-elongata_contig205843.5877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig205843 506..994 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig205843.5877.1

>prot_H-elongata_contig205843.5877.1 ID=prot_H-elongata_contig205843.5877.1|Name=mRNA_H-elongata_contig205843.5877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
LRRKTKQRLSALRKKTSAGLLHADAAAVSPTISDKKKQRRRQGDRLGGIP
SAMKTVKRENGVMHLSPSAANGVDPSTPKDALAAELWAWLGGVGVGRVCG
ADRSMRSYADAGGAGGVRSAASGGGGGEWRGAFTNR
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mRNA from alignment at H-elongata_contig205843:506..994-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig205843.5877.1 ID=mRNA_H-elongata_contig205843.5877.1|Name=mRNA_H-elongata_contig205843.5877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=489bp|location=Sequence derived from alignment at H-elongata_contig205843:506..994- (Himanthalia elongata Himel1 dioecious)
CTGCGGCGTAAAACAAAGCAGCGGCTTAGCGCGCTCCGTAAAAAAACGAG
CGCGGGTCTTCTCCGTTCGTCTTACTCTTCGCCTACATCGCCGTCCAGGT
CGTCGTCGTTCTCCAATATATTGAAGAAATCACCTTTCGCTGCAGATGCC
GATGCCGCCGCCGTTTCCCCCACCATCTCCGACAAAAAAAAACAACGTCG
GCGGCAAGGCGATCGGCTAGGTGGCATCCCGAGTGCAATGAAAACCGTTA
AACGCGAAAACGGCGTGATGCACTTGTCGCCGAGTGCGGCCAACGGCGTC
GACCCGTCGACGCCCAAGGACGCGCTCGCCGCTGAGCTGTGGGCTTGGCT
CGGGGGCGTCGGGGTGGGAAGAGTATGCGGAGCAGACCGGTCGATGAGGT
CATACGCCGACGCCGGGGGAGCCGGGGGTGTGAGAAGCGCAGCATCAGGG
GGCGGAGGTGGCGAGTGGCGAGGCGCTTTCACCAACCGT
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Coding sequence (CDS) from alignment at H-elongata_contig205843:506..994-

>mRNA_H-elongata_contig205843.5877.1 ID=mRNA_H-elongata_contig205843.5877.1|Name=mRNA_H-elongata_contig205843.5877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig205843:506..994- (Himanthalia elongata Himel1 dioecious)
CTGCGGCGTAAAACAAAGCAGCGGCTTAGCGCGCTCCGTAAAAAAACGAG
CGCGGGTCTTCTCCCTGCGGCGTAAAACAAAGCAGCGGCTTAGCGCGCTC
CGTAAAAAAACGAGCGCGGGTCTTCTCCATGCCGATGCCGCCGCCGTTTC
CCCCACCATCTCCGACAAAAAAAAACAACGTCGGCGGCAAGGCGATCGGC
TAGGTGGCATCCCGAGTGCAATGAAAACCGTTAAACGCGAAAACGGCGTG
ATGCACTTGTCGCCGAGTGCGGCCAACGGCGTCGACCCGTCGACGCCCAA
GGACGCGCTCGCCGCTGAGCTGTGGGCTTGGCTCGGGGGCGTCGGGGTGG
GAAGAGTATGCGGAGCAGACCGGTCGATGAGGTCATACGCCGACGCCGGG
GGAGCCGGGGGTGTGAGAAGCGCAGCATCAGGGGGCGGAGGTGGCGAGTG
GCGAGGCGCTTTCACCAACCGTATGCCGATGCCGCCGCCGTTTCCCCCAC
CATCTCCGACAAAAAAAAACAACGTCGGCGGCAAGGCGATCGGCTAGGTG
GCATCCCGAGTGCAATGAAAACCGTTAAACGCGAAAACGGCGTGATGCAC
TTGTCGCCGAGTGCGGCCAACGGCGTCGACCCGTCGACGCCCAAGGACGC
GCTCGCCGCTGAGCTGTGGGCTTGGCTCGGGGGCGTCGGGGTGGGAAGAG
TATGCGGAGCAGACCGGTCGATGAGGTCATACGCCGACGCCGGGGGAGCC
GGGGGTGTGAGAAGCGCAGCATCAGGGGGCGGAGGTGGCGAGTGGCGAGG
CGCTTTCACCAACCGT
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