mRNA_H-elongata_contig20562.5867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20562.5867.1
Unique NamemRNA_H-elongata_contig20562.5867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: UPI001EE61CA4 (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61CA4)

HSP 1 Score: 82.0 bits (201), Expect = 4.080e-16
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TGQ+I TGADDH++K      IWS S+GR++ + RGH++ ITDLAV+ + T L   S D+  RV   RT   + VL+GH   +  V F P
Sbjct:  188 VYCVSFDRTGQYIFTGADDHLVK------IWSASAGRLLATFRGHAAEITDLAVNFENTLLACGSCDKIIRVWCLRTKAPVIVLQGHTGMITSVQFCP 279
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: UPI001EB08AF9 (bromodomain and WD repeat-containing protein 3-like n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB08AF9)

HSP 1 Score: 82.0 bits (201), Expect = 4.180e-16
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TGQ+I TGADDH++K      IWS S+GR++ + RGH++ ITDLAV+ + T L   S D+  RV   RT   + VL+GH   +  V F P
Sbjct:  188 VYCVSFDRTGQYIFTGADDHLVK------IWSASAGRLLATFRGHAAEITDLAVNFENTLLACGSCDKFIRVWCLRTKAPVIVLQGHTGMITSVQFCP 279
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: B4JFX1_DROGR (GH18810 n=1 Tax=Drosophila grimshawi TaxID=7222 RepID=B4JFX1_DROGR)

HSP 1 Score: 81.6 bits (200), Expect = 5.730e-16
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS + GR++ +LRG S+ ITD+A++ D T L + S DR  RV D +T   +AVL GH   +  V F P
Sbjct:  186 VYCVLFDRTGRYIITGADDLLIK------IWSAADGRLLATLRGASAEITDMAINLDNTMLAAGSVDRILRVWDMQTTSPIAVLTGHTGMITSVNFCP 277
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: UPI000C86F3C0 (bromodomain and WD repeat-containing protein 3 isoform X1 n=1 Tax=Drosophila grimshawi TaxID=7222 RepID=UPI000C86F3C0)

HSP 1 Score: 81.6 bits (200), Expect = 5.730e-16
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS + GR++ +LRG S+ ITD+A++ D T L + S DR  RV D +T   +AVL GH   +  V F P
Sbjct:  186 VYCVLFDRTGRYIITGADDLLIK------IWSAADGRLLATLRGASAEITDMAINLDNTMLAAGSVDRILRVWDMQTTSPIAVLTGHTGMITSVNFCP 277
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: A0A034W379_BACDO (Bromodomain and WD repeat-containing protein 1 n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034W379_BACDO)

HSP 1 Score: 80.5 bits (197), Expect = 1.420e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS   GR++ +LRG S+ ITD+A++ D T L + S DR  RV D +T   +AVL GH   +  V F P
Sbjct:  187 VYCVLFDRTGRYIITGADDLLIK------IWSAMDGRLLATLRGASAEITDIAINLDNTMLAAGSLDRILRVWDMQTTSPIAVLSGHTGMITSVNFCP 278
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: UPI001601D772 (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601D772)

HSP 1 Score: 80.5 bits (197), Expect = 1.430e-15
Identity = 45/98 (45.92%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY I F +TG+ I+TGADD+++K      IWS   GR+M +LRG SS ITD+AV+ + T L + S D+  RV D +T   ++VL GH A V  + F P
Sbjct:  192 VYCIAFDRTGKCIITGADDNLLK------IWSAHDGRLMATLRGMSSEITDMAVNYENTLLAAGSVDKTIRVWDMKTLAPVSVLMGHSAMVTSLQFCP 283
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: A0A034W2M6_BACDO (Bromodomain and WD repeat-containing protein 3 n=3 Tax=Dacini TaxID=43871 RepID=A0A034W2M6_BACDO)

HSP 1 Score: 80.5 bits (197), Expect = 1.450e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS   GR++ +LRG S+ ITD+A++ D T L + S DR  RV D +T   +AVL GH   +  V F P
Sbjct:  187 VYCVLFDRTGRYIITGADDLLIK------IWSAMDGRLLATLRGASAEITDIAINLDNTMLAAGSLDRILRVWDMQTTSPIAVLSGHTGMITSVNFCP 278
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: A0A6P4K720_DROBP (bromodomain and WD repeat-containing protein 3 isoform X2 n=2 Tax=ananassae subgroup TaxID=32347 RepID=A0A6P4K720_DROBP)

HSP 1 Score: 80.5 bits (197), Expect = 1.460e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS + GR++ +LRG SS ITD+A++ D T L + S DR  RV D +T   +AVL  H   +  V F P
Sbjct:  186 VYCVLFDRTGRYIITGADDLLIK------IWSAADGRLLATLRGASSEITDIAINLDNTMLAAGSVDRILRVWDMQTTSPIAVLSAHTGMITSVNFCP 277
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: UPI001C8A32B4 (bromodomain and WD repeat-containing protein 3 n=1 Tax=Drosophila bipectinata TaxID=42026 RepID=UPI001C8A32B4)

HSP 1 Score: 80.5 bits (197), Expect = 1.460e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS + GR++ +LRG SS ITD+A++ D T L + S DR  RV D +T   +AVL  H   +  V F P
Sbjct:  186 VYCVLFDRTGRYIITGADDLLIK------IWSAADGRLLATLRGASSEITDIAINLDNTMLAAGSVDRILRVWDMQTTSPIAVLSAHTGMITSVNFCP 277
[Close]
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Match: A0A6P4K6M3_DROBP (bromodomain and WD repeat-containing protein 3 isoform X1 n=1 Tax=Drosophila bipectinata TaxID=42026 RepID=A0A6P4K6M3_DROBP)

HSP 1 Score: 80.5 bits (197), Expect = 1.460e-15
Identity = 44/98 (44.90%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:    1 VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIITDLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP 294
            VY + F +TG++I+TGADD +IK      IWS + GR++ +LRG SS ITD+A++ D T L + S DR  RV D +T   +AVL  H   +  V F P
Sbjct:  186 VYCVLFDRTGRYIITGADDLLIK------IWSAADGRLLATLRGASSEITDIAINLDNTMLAAGSVDRILRVWDMQTTSPIAVLSAHTGMITSVNFCP 277
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20562.5867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001EE61CA44.080e-1644.90bromodomain and WD repeat-containing protein 3-lik... [more]
UPI001EB08AF94.180e-1644.90bromodomain and WD repeat-containing protein 3-lik... [more]
B4JFX1_DROGR5.730e-1644.90GH18810 n=1 Tax=Drosophila grimshawi TaxID=7222 Re... [more]
UPI000C86F3C05.730e-1644.90bromodomain and WD repeat-containing protein 3 iso... [more]
A0A034W379_BACDO1.420e-1544.90Bromodomain and WD repeat-containing protein 1 n=1... [more]
UPI001601D7721.430e-1545.92bromodomain and WD repeat-containing protein 3-lik... [more]
A0A034W2M6_BACDO1.450e-1544.90Bromodomain and WD repeat-containing protein 3 n=3... [more]
A0A6P4K720_DROBP1.460e-1544.90bromodomain and WD repeat-containing protein 3 iso... [more]
UPI001C8A32B41.460e-1544.90bromodomain and WD repeat-containing protein 3 n=1... [more]
A0A6P4K6M3_DROBP1.460e-1544.90bromodomain and WD repeat-containing protein 3 iso... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20562contigH-elongata_contig20562:2253..2661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score82.4
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog7222.FBpp0152716
Preferred nameBRWD3
KEGG koko:K11798
GOsGO:0002165,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007431,GO:0007435,GO:0007552,GO:0008150,GO:0008219,GO:0008360,GO:0009653,GO:0009719,GO:0009725,GO:0009791,GO:0009886,GO:0009887,GO:0009889,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010623,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012501,GO:0012502,GO:0014070,GO:0016043,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0022612,GO:0023051,GO:0023056,GO:0030154,GO:0031323,GO:0031326,GO:0032501,GO:0032502,GO:0033993,GO:0035069,GO:0035070,GO:0035071,GO:0035072,GO:0035075,GO:0035078,GO:0035081,GO:0035096,GO:0035272,GO:0035561,GO:0035562,GO:0036314,GO:0042221,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044424,GO:0044464,GO:0045595,GO:0045664,GO:0046425,GO:0046427,GO:0046532,GO:0048102,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048699,GO:0048707,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050767,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051100,GO:0051128,GO:0051171,GO:0051239,GO:0051252,GO:0051960,GO:0060033,GO:0060255,GO:0060284,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0080090,GO:0097305,GO:1901654,GO:1901700,GO:1902531,GO:1902533,GO:1903506,GO:1904892,GO:1904894,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.bromo domain
EggNOG OGs38CE8@33154,3BB2M@33208,3CYU5@33213,3SIWS@50557,41VHC@6656,44X63@7147,45PH8@7214,COG2319@1,KOG0644@2759
COG Functional cat.S
Best tax levelDrosophilidae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930151.604848-CDS-H-elongata_contig20562:2252..23401622930151.604848-CDS-H-elongata_contig20562:2252..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20562 2253..2340 +
1691679300.8423533-CDS-H-elongata_contig20562:2252..23401691679300.8423533-CDS-H-elongata_contig20562:2252..2340Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20562 2253..2340 +
1622930151.625501-CDS-H-elongata_contig20562:2455..26611622930151.625501-CDS-H-elongata_contig20562:2455..2661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20562 2456..2661 +
1691679300.8537567-CDS-H-elongata_contig20562:2455..26611691679300.8537567-CDS-H-elongata_contig20562:2455..2661Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20562 2456..2661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20562.5867.1prot_H-elongata_contig20562.5867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20562 2253..2661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20562.5867.1

>prot_H-elongata_contig20562.5867.1 ID=prot_H-elongata_contig20562.5867.1|Name=mRNA_H-elongata_contig20562.5867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
VYGIKFYQTGQFILTGADDHVIKVWCRIGIWSTSSGRIMPSLRGHSSIIT
DLAVSPDYTKLVSSSEDRNHRVRDPRTGPSLAVLRGHEAPVNLVCFAP
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mRNA from alignment at H-elongata_contig20562:2253..2661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20562.5867.1 ID=mRNA_H-elongata_contig20562.5867.1|Name=mRNA_H-elongata_contig20562.5867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=409bp|location=Sequence derived from alignment at H-elongata_contig20562:2253..2661+ (Himanthalia elongata Himel1 dioecious)
GTGTACGGCATCAAGTTTTATCAGACGGGGCAGTTCATCCTGACCGGTGC
AGACGATCACGTCATCAAGGTTTGGTGCCGCATCGGAAGTTGGCAGCCTC
GTTCCGTTTACCCTTGCAAGGGATCGTCTCCCCCTCGAGATCTCGAGGAG
ATGAAAGAGTATCGTCTCCGCTGCTTTGTTTTGTATTCCCTTTTTACACA
CAGTCTGGTCCACCAGCTCGGGGCGCATTATGCCTTCCCTGCGAGGTCAC
TCGAGCATTATCACAGACTTGGCCGTCAGCCCCGATTACACAAAGCTCGT
GAGCTCCTCCGAGGACCGCAACCATCGCGTCCGTGACCCGCGGACGGGGC
CATCGCTCGCCGTCCTGCGTGGCCACGAAGCACCTGTAAACCTTGTGTGT
TTTGCACCG
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Coding sequence (CDS) from alignment at H-elongata_contig20562:2253..2661+

>mRNA_H-elongata_contig20562.5867.1 ID=mRNA_H-elongata_contig20562.5867.1|Name=mRNA_H-elongata_contig20562.5867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig20562:2253..2661+ (Himanthalia elongata Himel1 dioecious)
GTGTACGGCATCAAGTTTTATCAGACGGGGCAGTTCATCCTGACCGGTGC
AGACGATCACGTCATCAAGGTTTGGTGCCGCATCGGAAGTGTACGGCATC
AAGTTTTATCAGACGGGGCAGTTCATCCTGACCGGTGCAGACGATCACGT
CATCAAGGTTTGGTGCCGCATCGGAATCTGGTCCACCAGCTCGGGGCGCA
TTATGCCTTCCCTGCGAGGTCACTCGAGCATTATCACAGACTTGGCCGTC
AGCCCCGATTACACAAAGCTCGTGAGCTCCTCCGAGGACCGCAACCATCG
CGTCCGTGACCCGCGGACGGGGCCATCGCTCGCCGTCCTGCGTGGCCACG
AAGCACCTGTAAACCTTGTGTGTTTTGCACCGTCTGGTCCACCAGCTCGG
GGCGCATTATGCCTTCCCTGCGAGGTCACTCGAGCATTATCACAGACTTG
GCCGTCAGCCCCGATTACACAAAGCTCGTGAGCTCCTCCGAGGACCGCAA
CCATCGCGTCCGTGACCCGCGGACGGGGCCATCGCTCGCCGTCCTGCGTG
GCCACGAAGCACCTGTAAACCTTGTGTGTTTTGCACCG
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