mRNA_H-elongata_contig20509.5849.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20509.5849.1
Unique NamemRNA_H-elongata_contig20509.5849.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 291 bits (746), Expect = 3.770e-90
Identity = 157/196 (80.10%), Postives = 173/196 (88.27%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADE-REAYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMTLKV 585
            GSTLEP+EIA V++ALEGL ELR++FCG+ A    DAKS  G+  +   TPRLAAVA EI LD+GL+GLL+GAFDS+GELS QRFPEIGRLR KA+SLRQGIKSTM RLMAGGEFSGMLADE REAYVSEIAGRFVIPV PTYKRTVGIVHDSSRTGKTLYVEPTQVVG TNELVE KL+LKVETQRIL+QMTLK+
Sbjct:  116 GSTLEPTEIAAVASALEGLFELREFFCGAVA----DAKSPGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMSRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQVVGPTNELVEVKLQLKVETQRILSQMTLKI 307
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 2.300e-78
Identity = 139/176 (78.98%), Postives = 152/176 (86.36%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADE-REAYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVE 525
            GSTLE +EIA V++ALEGL ELR++FCG+ A    DAK   G+  +   TPRLAAVA EI LD+GL+GLL+GAFDS+GELS QRFPEIGRLR KA+SLRQGIKSTM RLMAGGEFSGMLADE REAYVSEIAGRFVIPV PTYKRTVGIVHDSSRTGKTLYVEPTQVVG TNELVE
Sbjct:  233 GSTLEATEIAAVASALEGLFELREFFCGAMA----DAKGAGGMVDRSGKTPRLAAVAAEIKLDEGLLGLLRGAFDSQGELSAQRFPEIGRLRSKADSLRQGIKSTMTRLMAGGEFSGMLADEGREAYVSEIAGRFVIPVTPTYKRTVGIVHDSSRTGKTLYVEPTQVVGPTNELVE 404
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 177 bits (448), Expect = 7.970e-48
Identity = 102/210 (48.57%), Postives = 134/210 (63.81%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADE-REAYVSEIAGRFVIPVRPTYKRT--------------VGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMTLKV 585
            G+TLEP E+ +VS  L  L  L+ +F   + +A     +  G  G    TP L  + + I LD  L+ LL  AFD+ GEL G++FPE+GRLR + + L   I+ ++ +L++ G FSGMLADE R AYVSE+ GRFV+PV+PTYKR               VGIVHD SRTGKTL++EP+ VV  TNELVE KL LK E  RIL++MT+KV
Sbjct:  108 GTTLEPPELREVSDCLTSLSNLKRFFNPEEGDAPVRGVTVSGGAGARYPTPTLQGLTRPIYLDPELVELLHEAFDATGELCGKKFPELGRLRARIDKLYDSIRQSVQKLLSSGTFSGMLADEGRGAYVSEVNGRFVLPVKPTYKRNGTCAAFCEAYDKRNVGIVHDVSRTGKTLFIEPSSVVEPTNELVELKLALKAEEARILSRMTIKV 317
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A7S3Y253_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y253_HETAK)

HSP 1 Score: 165 bits (417), Expect = 2.300e-46
Identity = 95/195 (48.72%), Postives = 125/195 (64.10%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADEREAYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMTLKV 585
            G+ LE  E+ +V+AALEGL  LR W  GS             I  K S+ P L A+ ++I   + L+ LL GAFD EGELSG++FP +G LR+     +Q I+S M  L+A  EF+ MLAD +   V E+ GR+V+ V+PTYKR+VGIVH  SR+GKT+YVEP QVV  TNEL E  + LK E  R+LA MTL++
Sbjct:  173 GTVLEVPELREVAAALEGLAALRKWLDGS-------------INEKASI-PTLKALGEDIRPSEQLVALLDGAFDEEGELSGKKFPRLGALREGILRKKQQIRSMMSSLLASAEFTAMLADPQ---VQELEGRYVVAVKPTYKRSVGIVHGDSRSGKTVYVEPAQVVEPTNELKELSIALKAEESRLLADMTLQI 350
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: K0RMS7_THAOC (Smr domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RMS7_THAOC)

HSP 1 Score: 129 bits (323), Expect = 5.700e-31
Identity = 82/197 (41.62%), Postives = 120/197 (60.91%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTP----RLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADERE-AYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMT 576
            G  LE  EI DVS+ +E  L++ DW   +  E   D   GE    ++ +      +L ++ ++I +D+ L+ LL  AFD EG+LSG  FP IGRLR K  +L++GI S+++ ++A       LA E   + +SEI GR VIPV+  Y  +VGIVHD+SR+GKT YVEP++VV  TNEL  A+  L+ E  ++  Q+T
Sbjct:  407 GKVLEGPEILDVSSMMELCLDVLDWS-DALEEWNRDNVGGEESEFEFELQQEPFVQLPSLVKQIHMDEELIELLATAFDEEGKLSGTTFPSIGRLRSKIRTLKRGILSSIESILALPSMRNKLAVESGGSLMSEINGRIVIPVQQQYS-SVGIVHDASRSGKTSYVEPSEVVQPTNELRSAESELRAEEAKVWRQLT 601
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: B8CDA4_THAPS (Smr domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDA4_THAPS)

HSP 1 Score: 127 bits (319), Expect = 1.980e-30
Identity = 82/200 (41.00%), Postives = 111/200 (55.50%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKA-------EAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADERE-AYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMT 576
            G  LE  EI +V+  LE  +++ DW    K        EA+SD K    +         L ++   I +DD L  LL  AFD EG LSG  FP IG LR K  + ++ I +++D L+A       LA E   A   EI GR VIPV+  Y+  +GIVHD+SR+GKT YVEPT++VG TNEL +A+  L+ E  R+  Q+T
Sbjct:  506 GKVLEGPEILEVTTMLEIAMDVLDWRYALKEFNEEIDNEADSDLKQEPFVE--------LVSLTDSIEIDDELFDLLTNAFDDEGRLSGTTFPFIGVLRAKVRTFKRDILASIDSLLAMPSMKNKLAVESGGALTMEINGRLVIPVQQKYQN-IGIVHDASRSGKTTYVEPTEIVGPTNELRQAEAELRSEEARVWRQLT 696
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A7S0DIF7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIF7_9EUKA)

HSP 1 Score: 124 bits (310), Expect = 8.110e-30
Identity = 74/188 (39.36%), Postives = 102/188 (54.26%), Query Frame = 1 
Query:   10 LEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADEREAYVSEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQM 573
            LE  E+A V  AL  L+ L DW                 +R      P L  +A++I +D  +  L  GAFD E  LS ++FP +  L+   +   + I+S MD L+   EF GML  +    +  I GRFV+ V+P +KR VGI HDSSRTGKTLY+EP QV+  TN ++EA   L+ E  +IL+ M
Sbjct:  298 LELDELASVGEALSALIVLEDWL--------------NQVRDGGPPAPNLLEIAKDIHIDAEIRELFDGAFDGES-LSREKFPHLKSLQDSIDKAERSIRSQMDSLVKSQEFDGMLESKS---IDRINGRFVLSVKPNFKRRVGIAHDSSRTGKTLYIEPFQVIEGTNAMIEAGRLLRQEEAKILSNM 467
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A4D9D3J8_9STRA (Smr domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J8_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.250e-27
Identity = 74/193 (38.34%), Postives = 112/193 (58.03%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADEREAYVSEIAGRFVIPVRPTYKRT-VGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMT 576
            G+ LE  ++  ++ AL  L  LRD+    +A    +  S            +L+  A++I L   L+ LL  AFD +G LSG +FP++ RLR + + L   IK+T+ +LM     S M+ DE   Y+++  GRFV+P++ TYKR  +GIVHD S TG+T+YVEP QV+  TN++   +L L  E  RI+ +MT
Sbjct:  186 GNVLELPDLRSIAKALIILATLRDFV---QAPVRKERLS------------QLSQFAEDIDLPFELVDLLSDAFDQDGRLSGVKFPQLKRLRDEVDRLYGSIKNTVGQLMKSTGMSQMVTDE---YIAQRNGRFVLPIKNTYKRAGLGIVHDQSNTGQTVYVEPVQVIEPTNDMKRLELELLQEEARIVGEMT 360
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A7S0Y8A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y8A7_9STRA)

HSP 1 Score: 111 bits (278), Expect = 8.750e-27
Identity = 74/204 (36.27%), Postives = 110/204 (53.92%), Query Frame = 1 
Query:    1 GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVTP---RLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADEREA-YVSEIA--------GRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMT 576
            G  LE  EI +VS+ +  + +++ W           ++S E I     V P    +  +   I L+  L  LL+ AFD+EG LSG+ FP +G+LR K  +L+  I +T+D +         LA E     VSE+A        GR V+P+ P Y   +GIVHDSSR+GKT+YVEP+++VG TNEL + +  L+ E  R+   +T
Sbjct:   42 GEVLEGPEILEVSSMMNAMEDVQLW-----------SRSLEHIVDHDDVLPMFVEIPRIVNSIELNTTLQVLLEEAFDNEGRLSGRTFPVLGQLRAKVRTLKADILATLDSITQLPSMKSKLALESGGPLVSEVASASGGNSGGRLVLPIDPKYASEMGIVHDSSRSGKTVYVEPSEIVGPTNELRQIERDLEAEEARVWRSLT 234
[Close]
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Match: A0A7S1YWC1_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YWC1_TRICV)

HSP 1 Score: 114 bits (284), Expect = 9.510e-27
Identity = 71/184 (38.59%), Postives = 104/184 (56.52%), Query Frame = 1 
Query:   40 AALEGLLELRDWFCGSKAEAESDAKSGEGIRGK-WSVTPRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQGIKSTMDRLMAGGEFSGMLADEREAYV-SEIAGRFVIPVRPTYKRTVGIVHDSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMTLKV 585
            ++L  L  L  W  G  +    D   G GI  + +   PRLA+    I +D  L+ LL+ AFD +G LSG  FPE+GRLR K  +L++ + + ++ L+A    S  L+ E    + SE+ GR V+PV  +   +VGIVHD SR+GKT Y EPT++V  TNE+  A+  L+ E  R    +T +V
Sbjct:    1 SSLRALERLERWGDGLASYKPPDDAPGGGIESETYRELPRLASF---IEVDPDLLELLEDAFDDDGRLSGDAFPEVGRLRSKVRTLKRDVLARLETLLAAPSLSSKLSLESGGPMYSEVNGRIVVPVDSSKGNSVGIVHDVSRSGKTSYAEPTELVAPTNEMRGAEAELRAEEARAWRTLTERV 181
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20509.5849.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP1_ECTSI3.770e-9080.10MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A6H5JAB7_9PHAE2.300e-7878.98DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A835YZI9_9STRA7.970e-4848.57Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A7S3Y253_HETAK2.300e-4648.72Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K0RMS7_THAOC5.700e-3141.62Smr domain-containing protein n=1 Tax=Thalassiosir... [more]
B8CDA4_THAPS1.980e-3041.00Smr domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S0DIF7_9EUKA8.110e-3039.36Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A4D9D3J8_9STRA4.250e-2738.34Smr domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S0Y8A7_9STRA8.750e-2736.27Hypothetical protein (Fragment) n=1 Tax=Pseudo-nit... [more]
A0A7S1YWC1_TRICV9.510e-2738.59Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20509contigH-elongata_contig20509:954..5723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.3e-76
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1
Ec32 orthologEc-10_002970.1
Exons5
Model size595
Cds size594
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20509.5849.1prot_H-elongata_contig20509.5849.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20509 954..5723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930149.47519-CDS-H-elongata_contig20509:953..10521622930149.47519-CDS-H-elongata_contig20509:953..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 954..1052 -
1691679299.897415-CDS-H-elongata_contig20509:953..10521691679299.897415-CDS-H-elongata_contig20509:953..1052Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 954..1052 -
1622930149.4897518-CDS-H-elongata_contig20509:1478..16131622930149.4897518-CDS-H-elongata_contig20509:1478..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 1479..1613 -
1691679299.9145792-CDS-H-elongata_contig20509:1478..16131691679299.9145792-CDS-H-elongata_contig20509:1478..1613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 1479..1613 -
1622930149.5124454-CDS-H-elongata_contig20509:3582..36941622930149.5124454-CDS-H-elongata_contig20509:3582..3694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 3583..3694 -
1691679299.9261382-CDS-H-elongata_contig20509:3582..36941691679299.9261382-CDS-H-elongata_contig20509:3582..3694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 3583..3694 -
1622930149.5327337-CDS-H-elongata_contig20509:4361..44951622930149.5327337-CDS-H-elongata_contig20509:4361..4495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 4362..4495 -
1691679299.9351707-CDS-H-elongata_contig20509:4361..44951691679299.9351707-CDS-H-elongata_contig20509:4361..4495Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 4362..4495 -
1622930149.5484257-CDS-H-elongata_contig20509:5609..57231622930149.5484257-CDS-H-elongata_contig20509:5609..5723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 5610..5723 -
1691679299.9521067-CDS-H-elongata_contig20509:5609..57231691679299.9521067-CDS-H-elongata_contig20509:5609..5723Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20509 5610..5723 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20509.5849.1

>prot_H-elongata_contig20509.5849.1 ID=prot_H-elongata_contig20509.5849.1|Name=mRNA_H-elongata_contig20509.5849.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp
GSTLEPSEIADVSAALEGLLELRDWFCGSKAEAESDAKSGEGIRGKWSVT
PRLAAVAQEITLDDGLMGLLKGAFDSEGELSGQRFPEIGRLRKKAESLRQ
GIKSTMDRLMAGGEFSGMLADEREAYVSEIAGRFVIPVRPTYKRTVGIVH
DSSRTGKTLYVEPTQVVGTTNELVEAKLRLKVETQRILAQMTLKVPM*
back to top

mRNA from alignment at H-elongata_contig20509:954..5723-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20509.5849.1 ID=mRNA_H-elongata_contig20509.5849.1|Name=mRNA_H-elongata_contig20509.5849.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4770bp|location=Sequence derived from alignment at H-elongata_contig20509:954..5723- (Himanthalia elongata Himel1 dioecious)
GGCTCCACCCTCGAGCCGAGCGAGATCGCCGACGTGTCCGCGGCGCTCGA
AGGTCTGCTAGAGCTGAGGGACTGGTTCTGCGGCAGCAAAGCAGAGGCGG
AGTCGGATGCGAAGGTGGGCTCCTTCCCCTCTTCGCTCCCTCGTTGGGAC
GCGAAACTTCCCTCCCTTACAAAACATAGCACATAGCGCATAAAACTGTA
AAACTGCAATACTGTAATGCATTACTATAGAGAGATATAGAGTTGTGACA
CGTCTGTTCATGATGTGGGTGATGACGCACGAAAGAAAGCATGACTGTAT
GGCTGTATCTATGCAGGTGGTCTAATATTACCATTAGTACTATTAATACA
AGTATTCATACAAGTAATATTGTGCAGTATTTTGGGTGAGCGAGTGCACC
GTACTTTCGATTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCATGTATAT
TATTATTGGATTGGATATTGTATTGGATATTGTAGATATTGATTAAAAAA
TAATTTGACTTTACAACTATTAATAGTCGTGTAATGAAGTATATAGGATA
TAGTGTAGATGTTCGGAAGGTTTGATTGATTTCATACCGTATGTTTTTTG
GTTTTTTTAAGCAGGTGTTCCCATACGGTATATGCCATACGGTATACGGT
ATGTTTTATTCGTCATCCCGAGGCAGACAGATAAGTTTCATTTCTTGTTC
CATCTGCGAAATAACCCCGCCCCCCGTGGCTTGCGCGGGTGTCTCTGACG
TGCGAAGAACTCCCCCTTCCCCCCCCCCCCCTCCTCCCCTTCATCAAAGC
AACTATTAATGCTGTATTGATAAATGTTTTAATCCTGGTACAGTAGCTTG
AGGGACTGGCTGTTCTAATAAATGTAGGAATCTGTAGCAGGTAGCATTAT
TACTGATGTGTAATATAGTAATTAGGAGTACTAATCTGTAGGACTAATAA
AAAGGCAGTATTAGTATCAATAGTGTTCATAGCATTAATAGTGTTCATAG
TATCAATAGTGTTAATAGTAGTATGTTTTATTATACTCTAGTAGCACTGT
GTATTTTTATAGTACAGTAACCACGGCGGTAGCGGTTACAGCATTATTCT
TACAGTCTCGTTCTTTTGTTTTTCTTCTAAAAAACATAATACACTCAATC
AAACCTTCCGAACATCCACCCACCCACACTTTCAAATCTCGGCTGAATCC
CGTCATCCCAACCGTCACATGGCGGTAGAGTGGCGAAGGCATCCGTGGGA
AATGGAGCGTCACGCCTCGCCTCGCCGCCGTGGCTCAGGAGATAACCCTC
GACGACGGGCTGATGGGGCTGCTCAAGGGCGCGTTCGACTCGGAGGGGGA
GCTGTCTGGACAGTGAGTTGAGCCTCCGGTGGCTTGTGCCCCATGTGTGT
CGCGATGGTGCCACCGGCATCAAAGATTTTGAGGGGTTTCTTGAATAACT
TTTTGCATTTTTTTTGTATACGAGGAAGGTGGAGAGAGGGGGGATCAATT
AACCAACAAGCAAAAAAAAAAATCCCCCTCCCCTTAATGGTCTGACAGAT
ACAGCAAGGCTATAAGGCATGCAAAACTTGAGTACGCCCCCCCCCCTCCC
CCTCTCTAGATAACGCCCCCCCCTCTCAAAAATGAAGTAAAATTATCACA
ATAATAGACTAATAACAAAAGCCTCATTCTGAGGATCGCAACGTACGTAG
CTATGGGTATGTTGTAGCCATGTTTCGCTGCTGTTTATAGCTTGGCATGG
TTTTGATGTTCACGTGACGCGCGCAGATCACTCGCGCGGATGAACACGCG
AGAGCTATCGCGTGAATGGCAATGGTACCAGCTGGTACGTTTTGGAAAAA
ATTGGGGCCCCTCCTCGCCTTGGATGGCGTTTTTTTATGTTTGGTTATTT
CTTTGACGTTTGCATTTACCTAACGTATGCCGTTTCATACCATATAATAT
CATGCCATATCGTACTATATTATATCATATTATATCATACCGTAAATTGA
ACTCCGGTGCTGCTGCTGCGTGCTGTCAGACGATTCCCAGAAATCGGACG
ATTGCGGAAAAAGGCGGAATCCTTGCGGCAGGGCATCAAGTCCACCATGG
ACAGGCTCATGGCGGGGGGGGAATTTTCAGGAATGCTAGCGGTGAGGCGA
AGGCGATATATACAAAACACGTAGCTTCACCCGTCCCCAAACCGTCTTCT
AGAGCCCTCTAGAGCGGTGGACATTTCGAACGGCAAGGCTGGGGGCAGCT
GGTGATCTGTCTCGAGAAGCGCACGGTTTGCCCCCTATAAACCCGTATTG
ACCCGTATTACCCAAGTATTGTTGGTTTGTGTGTACTGTGATACATACCA
ATATTAATGCTAGAATTAGGCGGCATGATACCTACGAGAGCGACAATCAA
GTAATCAATCAGTCCATTAATCCATATCTATCTATCAATCAATCCATTTA
TAGCATGAATAGCACACATATCAATAAATATGATCAAATACCAAAAACAC
ATAATACACATACATAAGCAATGCACAATGCACACACAATTGACACTAAA
TCCCTTACGAGAATACTATTACTTACTATTATTATTACTATTACTTACTA
TTATTATTACTATTACTTACTATTACTTACTGTTTTACTATTACTTACTA
TTACTAGAGGAAGCTACTAGACTATTATATTATGCATTAATGGTGTATTT
AATTTTCTCTCTTCGATCGGCATGTTGTATTTTTTTTATGTAGTATAGTA
TAATATAGTAGATTGTATACTGTTTGATGTTTTAATCATATACTCCGATA
CTCTATGTGCTATACTGACTGTGGTATACTATACTGTATATACTATACTA
TACTGTACTATACTATCTGTGGTATACTATACTGTATACTGTATACTGTA
TCGCACATGTCCACTCTGCCAATGGTGGGTGTGGGAAAAGAAAGGTACAC
AATACTTGGGTTCATTGGGTTACCTGAATAGGCTGCACCCGTTACTCAAG
CTACTTTGAGGACTACTGCTGGCTCAGTACCGGTGGACTCTCGGCCTGAA
CGCCATCGGTACGCAATTACAGGACCTGGTGAAATCGGATTGACCCGATG
ACGGTTGACGGTAGAGATAGACGACGTCACTGAAAACGAGAGGATCGAGA
GGATCCCGGGAGTACGCACCAAATTCAGGCTGGGTTGAGATAATGAGCAG
GCTGACGCGGGACGGGACTGCCGGACCTGTCTCGTGAAAGCAAATTCTCA
GGCTCGAACAGGGACAGGGAAAATTAAATTCCCGGTTCAGCTGACCATAA
GCAGGTGTCAGCCAAATCCGATTTATGCATACTCTGCTATATACTACTAG
TACCATATACCACCATATACTACCATATACTATATAGTAGATGTTATATG
TGATGGGTTATGACCACACATAGTGTATAGTGTCGTGTATCGTCAGCTAT
AGAGCGTACACTTTCGAGAGCGGTAGTACGATACGTATCACCTCGTATTA
GATACAATACGGTACGATATGACACCCTGCCGGTCGGGGGGTGAAGATGG
GAGGCGGGTGGATTAAAAAATGAGGATCGAACTCTGTCAATGACGTCCTC
TAATAGCTGTCAGTAACATCAATCGTCGATCATGAATTAGCTATCAACAA
TCAACAATCAAGAACCTCCCATGGTGCAAAGAAGGTGTGGATGTTCGGAG
GCTTGGAATGGGTTCATATGTTTTGAATGAAAAAATGATGCGAAGCGGCA
TAAAAACACACGATAATATACACTATATACTATCCACAACACACTACACT
ACGTGCACTATATAATATACACTATACACTATGCACTATATAATATACAC
TATGTACACTACACTATGCACTATACACTATAATTTACACTATACACTAC
ACTTCACATGATGCACTACATTATACACTTTACACTACACCTACACTATA
GACTCTACACTACAGTATACAATATACAATTTACACTACACTATAGACTC
TACACTACAGTATACAATATACACTATACACTACACAATATGCACTATTC
ACTATACATTATACACTACACTATACATTATTCGCTATTCACTATAAACT
GCGTGCACAGGACGAGCGCGAGGCGTACGTGTCGGAGATCGCGGGGCGGT
TCGTGATCCCCGTGCGACCAACGTATAAGAGGACGGTCGGAATCGTCCAC
GACAGTTCGAGAACCGGAAAGACTCTCTACGTTGAGCCTACGCAGGCAAG
TCATCGCAGCGAAGGTAGCGGTGGTAGTAGCGGTCTGCGATACCGATGAA
GAGAATAGCAGACTATACTATACTATACTATACTATACTATAGGGCAGTA
TAGTAGTCTTATCATATATTATACCACAATGTGACAATGTGGTACAGCAG
TGGTGTACTACTGCATATCCTGTGATATACTATAATTTACAATCATATAC
TATGATATACTGTACGAAATATATATATTTTTGTGGTTGTGGCCTATCAA
TAAAAGTACTATTATTAATAGTCCTCTCTATTTGTATTTAGTTTAGATCA
ATGTAATGTAATGTAATGTTGATTGTATTTTTGCTGCTATTAATAATACT
TTTACTAATACTTATACTAATACTAATATCAATATAAATCCTAATATCAA
TATCAATCCTAATACGCACAGGTGGTGGGAACGACGAACGAGCTGGTCGA
AGCGAAGCTGCGGCTTAAGGTGGAGACACAGAGAATCCTCGCCCAGATGA
CCCTCAAGGTGCCGATGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig20509:954..5723-

>mRNA_H-elongata_contig20509.5849.1 ID=mRNA_H-elongata_contig20509.5849.1|Name=mRNA_H-elongata_contig20509.5849.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig20509:954..5723- (Himanthalia elongata Himel1 dioecious)
GGCTCCACCCTCGAGCCGAGCGAGATCGCCGACGTGTCCGCGGCGCTCGA
AGGTCTGCTAGAGCTGAGGGACTGGTTCTGCGGCAGCAAAGCAGAGGCGG
AGTCGGATGCGAAGGGCTCCACCCTCGAGCCGAGCGAGATCGCCGACGTG
TCCGCGGCGCTCGAAGGTCTGCTAGAGCTGAGGGACTGGTTCTGCGGCAG
CAAAGCAGAGGCGGAGTCGGATGCGAAGAGTGGCGAAGGCATCCGTGGGA
AATGGAGCGTCACGCCTCGCCTCGCCGCCGTGGCTCAGGAGATAACCCTC
GACGACGGGCTGATGGGGCTGCTCAAGGGCGCGTTCGACTCGGAGGGGGA
GCTGTCTGGACAAGTGGCGAAGGCATCCGTGGGAAATGGAGCGTCACGCC
TCGCCTCGCCGCCGTGGCTCAGGAGATAACCCTCGACGACGGGCTGATGG
GGCTGCTCAAGGGCGCGTTCGACTCGGAGGGGGAGCTGTCTGGACAACGA
TTCCCAGAAATCGGACGATTGCGGAAAAAGGCGGAATCCTTGCGGCAGGG
CATCAAGTCCACCATGGACAGGCTCATGGCGGGGGGGGAATTTTCAGGAA
TGCTAGCGACGATTCCCAGAAATCGGACGATTGCGGAAAAAGGCGGAATC
CTTGCGGCAGGGCATCAAGTCCACCATGGACAGGCTCATGGCGGGGGGGG
AATTTTCAGGAATGCTAGCGGACGAGCGCGAGGCGTACGTGTCGGAGATC
GCGGGGCGGTTCGTGATCCCCGTGCGACCAACGTATAAGAGGACGGTCGG
AATCGTCCACGACAGTTCGAGAACCGGAAAGACTCTCTACGTTGAGCCTA
CGCAGGACGAGCGCGAGGCGTACGTGTCGGAGATCGCGGGGCGGTTCGTG
ATCCCCGTGCGACCAACGTATAAGAGGACGGTCGGAATCGTCCACGACAG
TTCGAGAACCGGAAAGACTCTCTACGTTGAGCCTACGCAGGTGGTGGGAA
CGACGAACGAGCTGGTCGAAGCGAAGCTGCGGCTTAAGGTGGAGACACAG
AGAATCCTCGCCCAGATGACCCTCAAGGTGCCGATGTGAGTGGTGGGAAC
GACGAACGAGCTGGTCGAAGCGAAGCTGCGGCTTAAGGTGGAGACACAGA
GAATCCTCGCCCAGATGACCCTCAAGGTGCCGATGTGA
back to top