mRNA_H-elongata_contig204651.5827.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig204651.5827.1
Unique NamemRNA_H-elongata_contig204651.5827.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A097IUD4_9PHAE (Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum TaxID=3015 RepID=A0A097IUD4_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 1.030e-48
Identity = 92/102 (90.20%), Postives = 94/102 (92.16%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRHTEALDAITRYLGVGSYAQWDE TRQSWLLMELQSKRPLLPR G ST+LGL +VVQ   DTLRTFEVAATLGEEALGAYVISMA SPSDVLAVKLMQ
Sbjct:  456 QESTRHTEALDAITRYLGVGSYAQWDEKTRQSWLLMELQSKRPLLPRVGSSTELGLGEVVQ---DTLRTFEVAATLGEEALGAYVISMATSPSDVLAVKLMQ 554          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A0A0V6T3_SACJA (Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A0A0V6T3_SACJA)

HSP 1 Score: 162 bits (410), Expect = 4.280e-44
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRHTEA+DAITRYLGVGSYAQWDE TRQSWLL ELQ KRPLLPR+    DLG D++VQ   DTL TFE+AATLG+EALGAYVISMA SPSDVLAVKLMQ
Sbjct:  455 QESTRHTEAMDAITRYLGVGSYAQWDEQTRQSWLLTELQGKRPLLPRNSSLADLGFDNIVQ---DTLGTFEMAATLGQEALGAYVISMATSPSDVLAVKLMQ 553          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A097IUC8_9PHAE (Phosphoenolpyruvate carboxylase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUC8_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 5.850e-44
Identity = 84/102 (82.35%), Postives = 87/102 (85.29%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRHTEA+DAITRYLGVGSYAQWDE TRQSWLL ELQ KRPLLPR     DLG D++VQ   DTL TFEVAATLGEEALGA VISMA SPSDVLAVKLMQ
Sbjct:  455 QESTRHTEAMDAITRYLGVGSYAQWDEETRQSWLLTELQGKRPLLPRGSSLADLGFDEIVQ---DTLGTFEVAATLGEEALGAQVISMASSPSDVLAVKLMQ 553          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: D8LTN1_ECTSI (Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTN1_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.780e-43
Identity = 83/102 (81.37%), Postives = 89/102 (87.25%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRHTEA+DAITRYLGVGSYAQWDE TRQSWLL ELQ KRPLLPR+   ++LG D++VQ   DTL TFEVAATLGEEALGA VISMA SPSDVLAVKLMQ
Sbjct:  455 QESTRHTEAMDAITRYLGVGSYAQWDETTRQSWLLTELQGKRPLLPRNTPLSELGFDEIVQ---DTLGTFEVAATLGEEALGAQVISMASSPSDVLAVKLMQ 553          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A835YNR8_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR8_9STRA)

HSP 1 Score: 135 bits (341), Expect = 8.920e-35
Identity = 70/102 (68.63%), Postives = 79/102 (77.45%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQAS-DDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLM 303
            QES RH+EALDAITR+LGVGSY QWDE TR +WLL EL SKRPLLPR+  +T         A+  DTLRTFE  A LG++ALGAYVISM KSPSDVLAVKL+
Sbjct:  414 QESVRHSEALDAITRWLGVGSYLQWDEETRTTWLLTELNSKRPLLPRNSLTTGSAPSSAFDATVKDTLRTFETVARLGKDALGAYVISMCKSPSDVLAVKLL 515          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A4D9DD20_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DD20_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.220e-30
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRS---GCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLM 303
            QEST HTE LDA+TRYLG+GSYAQWDE TR SWL  EL +KRPLLP+      + D      V    D L TF + A +GEE+LGAYVISMAK+PSDVLAVKL+
Sbjct:  465 QESTVHTETLDAVTRYLGLGSYAQWDEETRMSWLNTELTAKRPLLPKEQPLASNKDFTFSAAVV---DCLETFRMIAGMGEESLGAYVISMAKAPSDVLAVKLL 565          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: W7TGA1_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TGA1_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.770e-30
Identity = 65/104 (62.50%), Postives = 75/104 (72.12%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRS---GCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLM 303
            QEST HTE LDA+TRYLG+GSYAQWDE TR SWL  EL +KRPLLP+      + D      V    D L TF + A +GEE+LGAYVISMAK+PSDVLAVKL+
Sbjct:  465 QESTVHTETLDAVTRYLGLGSYAQWDEETRMSWLNTELTAKRPLLPKEQPLASNKDFTFSAAVV---DCLETFRMIAGMGEESLGAYVISMAKAPSDVLAVKLL 565          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A7S3Q667_9STRA (Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q667_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.670e-29
Identity = 61/103 (59.22%), Postives = 78/103 (75.73%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQV 309
            QESTRHTEALDAITR+LGVGSY++WDEAT+ +WL  EL SKRPL+ RS  + +    D V+   DTL TFE+ +   +++L AYVIS A +PSDVLAV L+Q+
Sbjct:  522 QESTRHTEALDAITRHLGVGSYSEWDEATKINWLQAELASKRPLIHRSAWADNADFSDTVK---DTLETFEMISEQHDDSLNAYVISQATTPSDVLAVLLLQI 621          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: UPI001D005D91 (phosphoenolpyruvate carboxylase n=1 Tax=Microbulbifer hainanensis TaxID=2735675 RepID=UPI001D005D91)

HSP 1 Score: 119 bits (297), Expect = 7.670e-29
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRHTEALDAITRYLG+GSYA+WDE  +Q++LL EL+S+RPL+  +  S+DL  DDV     + L T +V A  G E LGAYVISMAK+ SDVLAV L+Q
Sbjct:  392 QESTRHTEALDAITRYLGLGSYAEWDEQQKQAFLLAELESRRPLVDEAFYSSDLCGDDV----REVLETCKVIAEQGSEGLGAYVISMAKTSSDVLAVMLLQ 489          
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Match: A0A7S2CUJ2_9STRA (Phosphoenolpyruvate carboxylase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CUJ2_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.960e-28
Identity = 62/106 (58.49%), Postives = 76/106 (71.70%), Query Frame = 1
Query:    1 QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGCSTDLGLDDVVQASD----DTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKLMQ 306
            QESTRH EALDA+TRYLGVG Y  WDE+ R+ WLL EL +KRPLLP   C  + G   +    D    DTL TF++ ATL  E+LGAYVISM+++ SDVLAV+L+Q
Sbjct:  456 QESTRHAEALDAVTRYLGVGGYLDWDESERREWLLKELSAKRPLLPV--CEDEAGYAALGPMFDPIVCDTLATFDMIATLPSESLGAYVISMSRAASDVLAVRLLQ 559          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig204651.5827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A097IUD4_9PHAE1.030e-4890.20Phosphoenolpyruvate carboxylase n=5 Tax=Sargassum ... [more]
A0A0A0V6T3_SACJA4.280e-4481.37Phosphoenolpyruvate carboxylase n=1 Tax=Saccharina... [more]
A0A097IUC8_9PHAE5.850e-4482.35Phosphoenolpyruvate carboxylase n=2 Tax=Scytosipho... [more]
D8LTN1_ECTSI2.780e-4381.37Phosphoenolpyruvate carboxylase n=2 Tax=Ectocarpus... [more]
A0A835YNR8_9STRA8.920e-3568.63Phosphoenolpyruvate carboxylase n=1 Tax=Tribonema ... [more]
A0A4D9DD20_9STRA8.220e-3062.50Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TGA1_9STRA8.770e-3062.50Phosphoenolpyruvate carboxylase n=1 Tax=Nannochlor... [more]
A0A7S3Q667_9STRA5.670e-2959.22Phosphoenolpyruvate carboxylase (Fragment) n=1 Tax... [more]
UPI001D005D917.670e-2962.75phosphoenolpyruvate carboxylase n=1 Tax=Microbulbi... [more]
A0A7S2CUJ2_9STRA1.960e-2858.49Phosphoenolpyruvate carboxylase n=1 Tax=Dictyocha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig204651contigH-elongata_contig204651:327..986 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.5
Seed ortholog evalue9.4e-37
Seed eggNOG ortholog2880.D8LTN1
KEGG rclassRC02741
KEGG koko:K01595
KEGG ReactionR00345
KEGG Pathwayko00620,ko00680,ko00710,ko00720,ko01100,ko01120,ko01200,map00620,map00680,map00710,map00720,map01100,map01120,map01200
KEGG ModuleM00168,M00170,M00171,M00172,M00173,M00346,M00374
EggNOG free text desc.phosphoenolpyruvate carboxylase activity
EggNOG OGs2QPVS@2759,COG2352@1
Ec32 ortholog descriptionphosphoenolpyruvate carboxylase
Ec32 orthologEc-28_003470.1
EC4.1.1.31
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size336
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930147.9306512-CDS-H-elongata_contig204651:326..4701622930147.9306512-CDS-H-elongata_contig204651:326..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204651 327..470 -
1691679299.3079944-CDS-H-elongata_contig204651:326..4701691679299.3079944-CDS-H-elongata_contig204651:326..470Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204651 327..470 -
1622930147.945764-CDS-H-elongata_contig204651:794..9861622930147.945764-CDS-H-elongata_contig204651:794..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204651 795..986 -
1691679299.3195643-CDS-H-elongata_contig204651:794..9861691679299.3195643-CDS-H-elongata_contig204651:794..986Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig204651 795..986 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig204651.5827.1prot_H-elongata_contig204651.5827.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig204651 327..986 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig204651.5827.1

>prot_H-elongata_contig204651.5827.1 ID=prot_H-elongata_contig204651.5827.1|Name=mRNA_H-elongata_contig204651.5827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=112bp
QESTRHTEALDAITRYLGVGSYAQWDEATRQSWLLMELQSKRPLLPRSGC
STDLGLDDVVQASDDTLRTFEVAATLGEEALGAYVISMAKSPSDVLAVKL
MQVGNAALMLC*
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mRNA from alignment at H-elongata_contig204651:327..986-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig204651.5827.1 ID=mRNA_H-elongata_contig204651.5827.1|Name=mRNA_H-elongata_contig204651.5827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=660bp|location=Sequence derived from alignment at H-elongata_contig204651:327..986- (Himanthalia elongata Himel1 dioecious)
CAGGAGTCCACCCGGCATACGGAAGCCCTGGACGCGATCACCCGTTACCT GGGAGTGGGGTCGTACGCCCAGTGGGACGAGGCTACGCGACAGTCTTGGT TGTTGATGGAGCTCCAGAGCAAGAGGCCCCTGCTTCCCAGAAGCGGCTGC AGCACCGATCTAGGCTTAGACGACGTGGTGCAGGCGAGTGACGTCATCGG GTGGGGAAGGGGTAGTGGCAGGGTCATGCATTTTGGTTAATTATTTGTGT TGAGGTAAAGAGAAGAACGTTAGCGCTAGGATTAGACCGGGTATACTGCT TCGTGGATTTTTTTTTTTACCGGGCGGGAAATAAAAACGCCTCCATACGG GGTGATATACGAACGCTTCATGCATCGTTTCCTTTTGGAGCTGTACAAAA GGCACACGTGAGTCGGAAAGAGCATGGGGTTTCAATGTGCAGAGTGTGGC GTGTTTATCAGGGTGGAGTATTTGAAACATGGACCGCCCTGTTTTTATGT TCTTCGTTATCCTCAGGATACCCTCCGGACATTCGAGGTGGCGGCGACCC TTGGAGAAGAAGCCTTGGGCGCCTACGTGATCTCCATGGCCAAGTCTCCG TCTGATGTCCTCGCCGTCAAGCTCATGCAGGTAGGGAACGCCGCCTTGAT GTTGTGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig204651:327..986-

>mRNA_H-elongata_contig204651.5827.1 ID=mRNA_H-elongata_contig204651.5827.1|Name=mRNA_H-elongata_contig204651.5827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=672bp|location=Sequence derived from alignment at H-elongata_contig204651:327..986- (Himanthalia elongata Himel1 dioecious)
CAGGAGTCCACCCGGCATACGGAAGCCCTGGACGCGATCACCCGTTACCT
GGGAGTGGGGTCGTACGCCCAGTGGGACGAGGCTACGCGACAGTCTTGGT
TGTTGATGGAGCTCCAGAGCAAGAGGCCCCTGCTTCCCAGAAGCGGCTGC
AGCACCGATCTAGGCTTAGACGACGTGGTGCAGGCGAGTGACCAGGAGTC
CACCCGGCATACGGAAGCCCTGGACGCGATCACCCGTTACCTGGGAGTGG
GGTCGTACGCCCAGTGGGACGAGGCTACGCGACAGTCTTGGTTGTTGATG
GAGCTCCAGAGCAAGAGGCCCCTGCTTCCCAGAAGCGGCTGCAGCACCGA
TCTAGGCTTAGACGACGTGGTGCAGGCGAGTGACGATACCCTCCGGACAT
TCGAGGTGGCGGCGACCCTTGGAGAAGAAGCCTTGGGCGCCTACGTGATC
TCCATGGCCAAGTCTCCGTCTGATGTCCTCGCCGTCAAGCTCATGCAGGT
AGGGAACGCCGCCTTGATGTTGTGTTAAGATACCCTCCGGACATTCGAGG
TGGCGGCGACCCTTGGAGAAGAAGCCTTGGGCGCCTACGTGATCTCCATG
GCCAAGTCTCCGTCTGATGTCCTCGCCGTCAAGCTCATGCAGGTAGGGAA
CGCCGCCTTGATGTTGTGTTAA
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