mRNA_H-elongata_contig203887.5803.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203887.5803.1
Unique NamemRNA_H-elongata_contig203887.5803.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig203887.5803.1 vs. uniprot
Match: D8LKC9_ECTSI (PIPK domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-14
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:    4 QVVRADSEFLARMKIMDYSLLTGIHDR-AQPAEEDQRHQSPRRYSKL 141
            +V RAD+EFLARMKIMDYSLLTGIHDR A+P++E+++HQSPRRYSK 
Sbjct:  687 KVARADAEFLARMKIMDYSLLTGIHDRTAKPSDEEEKHQSPRRYSKF 733
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BLAST of mRNA_H-elongata_contig203887.5803.1 vs. uniprot
Match: A0A6H5KUU1_9PHAE (PIPK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU1_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 6.640e-14
Identity = 35/47 (74.47%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:    4 QVVRADSEFLARMKIMDYSLLTGIHDR-AQPAEEDQRHQSPRRYSKL 141
            +V R D+EFLARMKIMDYSLLTGIHDR A+P +E+++HQSPRRYSK 
Sbjct:  965 EVARGDAEFLARMKIMDYSLLTGIHDRTAKPPDEEEKHQSPRRYSKF 1011
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203887.5803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKC9_ECTSI1.400e-1476.60PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KUU1_9PHAE6.640e-1474.47PIPK domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203887contigH-elongata_contig203887:62..205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog2880.D8LKC9
KEGG rclassRC00002,RC00078
KEGG koko:K00889
KEGG ReactionR03469
KEGG Pathwayko00562,ko01100,ko04011,ko04070,ko04072,ko04139,ko04144,ko04666,ko04810,ko05231,map00562,map01100,map04011,map04070,map04072,map04139,map04144,map04666,map04810,map05231
KEGG ModuleM00130
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
EC2.7.1.68
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930145.693666-CDS-H-elongata_contig203887:61..2051622930145.693666-CDS-H-elongata_contig203887:61..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203887 62..205 +
1691679298.5032246-CDS-H-elongata_contig203887:61..2051691679298.5032246-CDS-H-elongata_contig203887:61..205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203887 62..205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203887.5803.1prot_H-elongata_contig203887.5803.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203887 62..205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203887.5803.1

>prot_H-elongata_contig203887.5803.1 ID=prot_H-elongata_contig203887.5803.1|Name=mRNA_H-elongata_contig203887.5803.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
YQVVRADSEFLARMKIMDYSLLTGIHDRAQPAEEDQRHQSPRRYSKL*
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mRNA from alignment at H-elongata_contig203887:62..205+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203887.5803.1 ID=mRNA_H-elongata_contig203887.5803.1|Name=mRNA_H-elongata_contig203887.5803.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig203887:62..205+ (Himanthalia elongata Himel1 dioecious)
TATCAGGTGGTTCGGGCGGACTCTGAATTCCTTGCCCGTATGAAGATAAT
GGACTACTCGCTCTTGACGGGGATCCACGACAGAGCCCAGCCTGCTGAAG
AGGATCAGCGACACCAATCTCCGAGACGATACTCCAAGTTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig203887:62..205+

>mRNA_H-elongata_contig203887.5803.1 ID=mRNA_H-elongata_contig203887.5803.1|Name=mRNA_H-elongata_contig203887.5803.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig203887:62..205+ (Himanthalia elongata Himel1 dioecious)
TATCAGGTGGTTCGGGCGGACTCTGAATTCCTTGCCCGTATGAAGATAAT
GGACTACTCGCTCTTGACGGGGATCCACGACAGAGCCCAGCCTGCTGAAG
AGGATCAGCGACACCAATCTCCGAGACGATACTCCAAGTTGTGATATCAG
GTGGTTCGGGCGGACTCTGAATTCCTTGCCCGTATGAAGATAATGGACTA
CTCGCTCTTGACGGGGATCCACGACAGAGCCCAGCCTGCTGAAGAGGATC
AGCGACACCAATCTCCGAGACGATACTCCAAGTTGTGA
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