mRNA_H-elongata_contig203540.5784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig203540.5784.1
Unique NamemRNA_H-elongata_contig203540.5784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 6.410e-32
Identity = 56/78 (71.79%), Postives = 64/78 (82.05%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPKDGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRDR 237
            R+PRPGCWE++S+  NGGLDV   ACLYVGDAAGRPK G  KKDFSAGDLKLA+N  +PFQTPEQFF  ST  LH++R
Sbjct:  376 RKPRPGCWEMVSTSYNGGLDVEKAACLYVGDAAGRPKQGTHKKDFSAGDLKLALNAKIPFQTPEQFFMRSTVPLHKNR 453          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A7S2Y1Q1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1Q1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 4.600e-20
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   79 CLYVGDAAGRPKDGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRDR 237
            C YVGDAAGRP +G RKKDFSAGDLK A+N+G+ F TPE+FF GSTQ LH  R
Sbjct:    4 CFYVGDAAGRPAEGKRKKDFSAGDLKFALNLGIRFYTPEEFFLGSTQSLHCSR 56          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A7S4PTE1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4PTE1_9DINO)

HSP 1 Score: 91.7 bits (226), Expect = 5.220e-20
Identity = 42/77 (54.55%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPKDGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRD 234
            R+P P  W+L+SS  NGG+ V  E   Y GDAAGR     +KKDFSA DLK A+NVGVPF TPE+FF G  Q   ++
Sbjct:  158 RKPLPASWKLMSSRFNGGVAVSVERSFYCGDAAGRVPPVVKKKDFSASDLKFALNVGVPFHTPEEFFLGKAQAYQKE 234          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A1R2C5Y8_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2C5Y8_9CILI)

HSP 1 Score: 86.7 bits (213), Expect = 3.280e-18
Identity = 36/74 (48.65%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPKDGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRL 225
            R+P  G W+  +   NGG++V      Y+GDAAGRP  G RKKDF+  DLK A+N+G+PF+TPE+FF G  + +
Sbjct:  145 RKPCTGMWDYFTKNLNGGINVDFSVSKYIGDAAGRPASGSRKKDFNDTDLKYALNIGIPFETPEKFFLGERENI 218          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A1V9ZVQ6_9STRA (Bifunctional polynucleotide phosphatase/kinase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVQ6_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.150e-17
Identity = 42/79 (53.16%), Postives = 53/79 (67.09%), Query Frame = 1
Query:    1 SRQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPK-DGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRD 234
            +R+PR G WE + S     +D+ +    Y GDAAGRPK  G  KKDFSAGD K A+N+G+ F+TPEQFF GS Q +H D
Sbjct:  260 NRKPRTGAWEFMVSHFKMNVDMTSS--FYCGDAAGRPKAPGKPKKDFSAGDYKFALNLGIIFKTPEQFFLGSKQSIHCD 336          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A6C0EA69_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0EA69_9ZZZZ)

HSP 1 Score: 84.7 bits (208), Expect = 1.620e-17
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPKDGPRKKDFSAGDLKLAINVGVPFQTPEQFF 204
            R+P  G W+ L +  NG + V    C++VGDAAGRPK G  K DFS  D K+AIN G+ FQTPEQFF
Sbjct:  119 RKPLTGMWDYLCNNLNGNVKVDKNQCIFVGDAAGRPKQGKNKADFSDSDFKMAINAGIEFQTPEQFF 185          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: A0A485L0I8_9STRA (Aste57867_14265 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L0I8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-17
Identity = 42/79 (53.16%), Postives = 52/79 (65.82%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPK-DGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRDR 237
            R+PR G WE ++   +  LDV T    Y GDAAGRPK  G  KKDFS GD K A+N+G+ F TPE+FF GS Q LH ++
Sbjct:  158 RKPRVGAWEFMAR--HCQLDVDTANSFYCGDAAGRPKAPGKAKKDFSCGDYKFALNLGITFYTPEKFFLGSKQSLHSNK 234          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: T0QN25_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QN25_SAPDV)

HSP 1 Score: 84.0 bits (206), Expect = 3.990e-17
Identity = 44/79 (55.70%), Postives = 51/79 (64.56%), Query Frame = 1
Query:    1 SRQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPK-DGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLHRD 234
            +R+PR G W+++ S  N  LDV      Y GDAAGRPK  G  KKDFSAGD K A+N+GVPF TPEQ F  S   LH D
Sbjct:  252 NRKPRTGAWDVMVSEFN--LDVDMTNSFYCGDAAGRPKATGKAKKDFSAGDYKFALNLGVPFWTPEQLFLNSKLSLHCD 328          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: W4GG15_9STRA (Polynucleotide kinase 3'-phosphatase, variant 3 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GG15_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.190e-17
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPK-DGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLH 228
            R+PR G W+LL  +D+  L+V      Y GDAAGRPK  G  KKDFS  D K A+NVGVPF TPE+ F  ST  LH
Sbjct:   36 RKPRTGAWKLL--LDHCSLNVDAATSFYCGDAAGRPKAPGKPKKDFSCADYKFALNVGVPFHTPERLFLQSTLSLH 109          
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Match: W4GGB4_9STRA (Polynucleotide kinase 3'-phosphatase, variant 2 n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGB4_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 7.370e-17
Identity = 42/76 (55.26%), Postives = 49/76 (64.47%), Query Frame = 1
Query:    4 RQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPK-DGPRKKDFSAGDLKLAINVGVPFQTPEQFFSGSTQRLH 228
            R+PR G W+LL  +D+  L+V      Y GDAAGRPK  G  KKDFS  D K A+NVGVPF TPE+ F  ST  LH
Sbjct:  166 RKPRTGAWKLL--LDHCSLNVDAATSFYCGDAAGRPKAPGKPKKDFSCADYKFALNVGVPFHTPERLFLQSTLSLH 239          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig203540.5784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS6_ECTSI6.410e-3271.79Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S2Y1Q1_9STRA4.600e-2071.70Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S4PTE1_9DINO5.220e-2054.55Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A1R2C5Y8_9CILI3.280e-1848.65Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A1V9ZVQ6_9STRA1.150e-1753.16Bifunctional polynucleotide phosphatase/kinase n=1... [more]
A0A6C0EA69_9ZZZZ1.620e-1755.22Uncharacterized protein n=1 Tax=viral metagenome T... [more]
A0A485L0I8_9STRA2.450e-1753.16Aste57867_14265 protein n=1 Tax=Aphanomyces stella... [more]
T0QN25_SAPDV3.990e-1755.70Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
W4GG15_9STRA6.190e-1755.26Polynucleotide kinase 3'-phosphatase, variant 3 n=... [more]
W4GGB4_9STRA7.370e-1755.26Polynucleotide kinase 3'-phosphatase, variant 2 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig203540contigH-elongata_contig203540:171..410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.3e-27
Seed eggNOG ortholog2880.D7FLS6
KEGG koko:K08073
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930144.0537412-CDS-H-elongata_contig203540:170..4101622930144.0537412-CDS-H-elongata_contig203540:170..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203540 171..410 +
1691679297.952681-CDS-H-elongata_contig203540:170..4101691679297.952681-CDS-H-elongata_contig203540:170..410Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig203540 171..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig203540.5784.1prot_H-elongata_contig203540.5784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig203540 171..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig203540.5784.1

>prot_H-elongata_contig203540.5784.1 ID=prot_H-elongata_contig203540.5784.1|Name=mRNA_H-elongata_contig203540.5784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
SRQPRPGCWELLSSIDNGGLDVLTEACLYVGDAAGRPKDGPRKKDFSAGD
LKLAINVGVPFQTPEQFFSGSTQRLHRDR*
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mRNA from alignment at H-elongata_contig203540:171..410+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig203540.5784.1 ID=mRNA_H-elongata_contig203540.5784.1|Name=mRNA_H-elongata_contig203540.5784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=240bp|location=Sequence derived from alignment at H-elongata_contig203540:171..410+ (Himanthalia elongata Himel1 dioecious)
TCCCGGCAGCCTCGCCCTGGCTGCTGGGAGCTGCTCTCGAGCATCGACAA CGGGGGCTTGGATGTTCTTACTGAGGCGTGTTTGTACGTCGGAGACGCCG CGGGGAGGCCGAAGGACGGTCCCCGCAAGAAAGATTTTTCCGCGGGAGAC TTAAAGCTGGCAATCAACGTCGGTGTGCCCTTCCAGACGCCGGAGCAATT CTTCTCGGGGTCCACGCAGCGACTGCATCGAGACAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig203540:171..410+

>mRNA_H-elongata_contig203540.5784.1 ID=mRNA_H-elongata_contig203540.5784.1|Name=mRNA_H-elongata_contig203540.5784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig203540:171..410+ (Himanthalia elongata Himel1 dioecious)
TCCCGGCAGCCTCGCCCTGGCTGCTGGGAGCTGCTCTCGAGCATCGACAA
CGGGGGCTTGGATGTTCTTACTGAGGCGTGTTTGTACGTCGGAGACGCCG
CGGGGAGGCCGAAGGACGGTCCCCGCAAGAAAGATTTTTCCGCGGGAGAC
TTAAAGCTGGCAATCAACGTCGGTGTGCCCTTCCAGACGCCGGAGCAATT
CTTCTCGGGGTCCACGCAGCGACTGCATCGAGACAGGTGATCCCGGCAGC
CTCGCCCTGGCTGCTGGGAGCTGCTCTCGAGCATCGACAACGGGGGCTTG
GATGTTCTTACTGAGGCGTGTTTGTACGTCGGAGACGCCGCGGGGAGGCC
GAAGGACGGTCCCCGCAAGAAAGATTTTTCCGCGGGAGACTTAAAGCTGG
CAATCAACGTCGGTGTGCCCTTCCAGACGCCGGAGCAATTCTTCTCGGGG
TCCACGCAGCGACTGCATCGAGACAGGTGA
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