mRNA_H-elongata_contig20351.5780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20351.5780.1
Unique NamemRNA_H-elongata_contig20351.5780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A7C9EF81_OPUST (NADH dehydrogenase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EF81_OPUST)

HSP 1 Score: 60.8 bits (146), Expect = 9.910e-11
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSK 126
            RFP GGVILRPG +YG RRVGSM LPLGV+  P+EM+ + +K
Sbjct:   58 RFPYGGVILRPGFVYGTRRVGSMKLPLGVIGSPLEMILQHAK 99
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A5J4ZRI8_9ASTE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Nyssaceae TaxID=4289 RepID=A0A5J4ZRI8_9ASTE)

HSP 1 Score: 63.5 bits (153), Expect = 1.350e-10
Identity = 32/52 (61.54%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            RFP GGVILRPG IYG RRVGSM LPLGV+  P+EM+    KH +S+ ++P+
Sbjct:  188 RFPYGGVILRPGFIYGTRRVGSMKLPLGVIGSPLEMIL---KHAKSLSQVPL 236
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A1S3YP87_TOBAC (uncharacterized protein At1g32220, chloroplastic-like n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S3YP87_TOBAC)

HSP 1 Score: 60.1 bits (144), Expect = 2.130e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSK 126
            R+P GGVILRPG IYG RRVGSM LPLGV+  P+EM+ + +K
Sbjct:   12 RYPYGGVILRPGFIYGTRRVGSMKLPLGVIGSPLEMILQHAK 53
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A438GHP4_VITVI (Uncharacterized protein, chloroplastic n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GHP4_VITVI)

HSP 1 Score: 60.1 bits (144), Expect = 2.740e-10
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            +FP GGVILRPG IYG R+VGSM LPLGV+  P+EMV    KH + ++++P+
Sbjct:   23 KFPYGGVILRPGFIYGTRQVGSMKLPLGVIGSPLEMVL---KHAKPLNQVPL 71
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A1U7W3T8_NICSY (uncharacterized protein At1g32220, chloroplastic n=1 Tax=Nicotiana sylvestris TaxID=4096 RepID=A0A1U7W3T8_NICSY)

HSP 1 Score: 60.5 bits (145), Expect = 5.400e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSK 126
            R+P GG+ILRPG IYG RRVGSM LPLGVV  P+EM+ + +K
Sbjct:   75 RYPYGGIILRPGFIYGTRRVGSMKLPLGVVGSPLEMILQRAK 116
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A484NNL1_9ASTE (Uncharacterized protein n=1 Tax=Cuscuta campestris TaxID=132261 RepID=A0A484NNL1_9ASTE)

HSP 1 Score: 60.1 bits (144), Expect = 5.410e-10
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            R+  GGVILRPG IYG RRVGSM LPLGVV  P+EMV +   H +S++++P+
Sbjct:   56 RYTYGGVILRPGFIYGTRRVGSMKLPLGVVGSPLEMVLQ---HAKSLNQLPL 104
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A0A0LML0_CUCSA (NAD(P)-bd_dom domain-containing protein n=7 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0LML0_CUCSA)

HSP 1 Score: 61.2 bits (147), Expect = 9.740e-10
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            +FP GGVILRPG IYG R VGSM LPLG++  P+EMV +   H + +H++P+
Sbjct:  193 KFPYGGVILRPGFIYGTRHVGSMKLPLGIIGSPLEMVLQ---HAKPLHQLPL 241
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BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A067KNT4_JATCU (NAD(P)-bd_dom domain-containing protein n=1 Tax=Jatropha curcas TaxID=180498 RepID=A0A067KNT4_JATCU)

HSP 1 Score: 61.2 bits (147), Expect = 9.740e-10
Identity = 29/52 (55.77%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            +FP GGVILRPG IYG R+VGSM LPLGV+  P+EM+ +   H +S++++P+
Sbjct:  193 KFPYGGVILRPGFIYGTRKVGSMKLPLGVIGSPLEMILQ---HAKSLNQLPL 241
[Close]
BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A7C9EA72_OPUST (NADH dehydrogenase n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EA72_OPUST)

HSP 1 Score: 61.2 bits (147), Expect = 1.080e-9
Identity = 29/42 (69.05%), Postives = 34/42 (80.95%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSK 126
            RFP GGVILRPG IYG RRVGSM LPLGV+  P+EM+ + +K
Sbjct:  218 RFPYGGVILRPGFIYGTRRVGSMKLPLGVIGSPLEMILQHAK 259
[Close]
BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Match: A0A059CQS6_EUCGR (NAD(P)-bd_dom domain-containing protein n=5 Tax=Myrtoideae TaxID=1699513 RepID=A0A059CQS6_EUCGR)

HSP 1 Score: 60.8 bits (146), Expect = 1.350e-9
Identity = 29/52 (55.77%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:    1 RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRMPV 156
            +FP GGVILRPG IYG RRVGSM +PLGV+  PMEM+ +   H + ++++P+
Sbjct:  193 KFPYGGVILRPGFIYGTRRVGSMKIPLGVIGSPMEMIFQ---HTKPLNQLPL 241
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20351.5780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C9EF81_OPUST9.910e-1166.67NADH dehydrogenase (Fragment) n=1 Tax=Opuntia stre... [more]
A0A5J4ZRI8_9ASTE1.350e-1061.54NAD(P)-bd_dom domain-containing protein n=2 Tax=Ny... [more]
A0A1S3YP87_TOBAC2.130e-1066.67uncharacterized protein At1g32220, chloroplastic-l... [more]
A0A438GHP4_VITVI2.740e-1057.69Uncharacterized protein, chloroplastic n=2 Tax=Vit... [more]
A0A1U7W3T8_NICSY5.400e-1066.67uncharacterized protein At1g32220, chloroplastic n... [more]
A0A484NNL1_9ASTE5.410e-1059.62Uncharacterized protein n=1 Tax=Cuscuta campestris... [more]
A0A0A0LML0_CUCSA9.740e-1055.77NAD(P)-bd_dom domain-containing protein n=7 Tax=Cu... [more]
A0A067KNT4_JATCU9.740e-1055.77NAD(P)-bd_dom domain-containing protein n=1 Tax=Ja... [more]
A0A7C9EA72_OPUST1.080e-969.05NADH dehydrogenase n=2 Tax=Opuntia streptacantha T... [more]
A0A059CQS6_EUCGR1.350e-955.77NAD(P)-bd_dom domain-containing protein n=5 Tax=My... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20351contigH-elongata_contig20351:310..465 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog3656.XP_008445291.1
EggNOG free text desc.protein At1g32220, chloroplastic-like
EggNOG OGs37J3U@33090,3GCWJ@35493,4JKJQ@91835,COG0702@1,KOG4288@2759
COG Functional cat.GM
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930143.6175706-CDS-H-elongata_contig20351:309..4651622930143.6175706-CDS-H-elongata_contig20351:309..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20351 310..465 +
1691679297.7795107-CDS-H-elongata_contig20351:309..4651691679297.7795107-CDS-H-elongata_contig20351:309..465Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20351 310..465 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20351.5780.1prot_H-elongata_contig20351.5780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20351 310..465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20351.5780.1

>prot_H-elongata_contig20351.5780.1 ID=prot_H-elongata_contig20351.5780.1|Name=mRNA_H-elongata_contig20351.5780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=52bp
RFPEGGVILRPGGIYGNRRVGSMTLPLGVVMRPMEMVSEMSKHFESMHRM
PV
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mRNA from alignment at H-elongata_contig20351:310..465+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20351.5780.1 ID=mRNA_H-elongata_contig20351.5780.1|Name=mRNA_H-elongata_contig20351.5780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=156bp|location=Sequence derived from alignment at H-elongata_contig20351:310..465+ (Himanthalia elongata Himel1 dioecious)
AGGTTTCCGGAGGGCGGAGTGATCTTGCGCCCGGGAGGCATCTACGGAAA
TAGAAGAGTGGGATCTATGACGCTACCTTTAGGGGTCGTGATGCGGCCGA
TGGAGATGGTGAGTGAGATGTCCAAGCACTTCGAAAGCATGCATCGCATG
CCTGTC
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Coding sequence (CDS) from alignment at H-elongata_contig20351:310..465+

>mRNA_H-elongata_contig20351.5780.1 ID=mRNA_H-elongata_contig20351.5780.1|Name=mRNA_H-elongata_contig20351.5780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=312bp|location=Sequence derived from alignment at H-elongata_contig20351:310..465+ (Himanthalia elongata Himel1 dioecious)
AGGTTTCCGGAGGGCGGAGTGATCTTGCGCCCGGGAGGCATCTACGGAAA
TAGAAGAGTGGGATCTATGACGCTACCTTTAGGGGTCGTGATGCGGCCGA
TGGAGATGGTGAGTGAGATGTCCAAGCACTTCGAAAGCATGCATCGCATG
CCTGTCAGGTTTCCGGAGGGCGGAGTGATCTTGCGCCCGGGAGGCATCTA
CGGAAATAGAAGAGTGGGATCTATGACGCTACCTTTAGGGGTCGTGATGC
GGCCGATGGAGATGGTGAGTGAGATGTCCAAGCACTTCGAAAGCATGCAT
CGCATGCCTGTC
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