mRNA_H-elongata_contig201855.5708.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201855.5708.1
Unique NamemRNA_H-elongata_contig201855.5708.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: D7FZA4_ECTSI (Adenylyl-sulfate kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZA4_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 4.000e-49
Identity = 81/86 (94.19%), Postives = 84/86 (97.67%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVLV 258
            RW LKGQRGVVLWLTGLSGSGKST+ANA+DVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDR+ENVRRV EVARLMVDLGIIVLV
Sbjct:   29 RWELKGQRGVVLWLTGLSGSGKSTVANALDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRRENVRRVAEVARLMVDLGIIVLV 114          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A3M1VBW0_9BACT (Adenylyl-sulfate kinase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1VBW0_9BACT)

HSP 1 Score: 130 bits (328), Expect = 2.140e-36
Identity = 62/83 (74.70%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGII 249
            R  LKG RGVVLW TGLSG GKSTIAN VD KL A G+HTY+LDGDN+RHGLN  LGFSPEDRKEN+RR+GEVA+L  D G+I
Sbjct:   21 RCRLKGHRGVVLWFTGLSGCGKSTIANTVDHKLHAMGKHTYVLDGDNIRHGLNKNLGFSPEDRKENIRRIGEVAKLFCDAGLI 103          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A836VT28_9PLAN (Adenylyl-sulfate kinase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A836VT28_9PLAN)

HSP 1 Score: 126 bits (316), Expect = 1.010e-34
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVL 255
            RW L G RG VLW TGLS SGKSTIAN VD KL A G+HT++LDGDN+RHGLN  LGFS EDR+EN+RR+GEVA+L  D GI+ L
Sbjct:   21 RWQLMGHRGAVLWFTGLSASGKSTIANTVDHKLHAMGKHTFVLDGDNIRHGLNKNLGFSAEDREENIRRIGEVAKLFCDAGILTL 105          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: UPI001FF5B05D (adenylyl-sulfate kinase n=1 Tax=Alcanivorax sp. CY1518 TaxID=2933565 RepID=UPI001FF5B05D)

HSP 1 Score: 125 bits (314), Expect = 2.440e-34
Identity = 61/85 (71.76%), Postives = 71/85 (83.53%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVL 255
            R  LKGQRG  +WLTGLSGSGKSTIANA++V L   GRHTY+LDGDNVRHGLN  LG S +DR EN+RRVGE++RLMVD G+IV+
Sbjct:   28 RARLKGQRGCCIWLTGLSGSGKSTIANALEVALHQAGRHTYLLDGDNVRHGLNKDLGMSDDDRTENIRRVGELSRLMVDAGLIVI 112          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A0B4XQK0_9GAMM (Adenylyl-sulfate kinase n=2 Tax=Alcanivorax TaxID=59753 RepID=A0A0B4XQK0_9GAMM)

HSP 1 Score: 125 bits (313), Expect = 3.640e-34
Identity = 60/82 (73.17%), Postives = 70/82 (85.37%), Query Frame = 1
Query:   10 LKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVL 255
            LKGQRG  LWLTGLSGSGKST+ANA++V L  +GRHTY+LDGDNVRHGLN  LG S  DR EN+RRVGE++RLMVD G+IV+
Sbjct:   31 LKGQRGCCLWLTGLSGSGKSTLANALEVALFEQGRHTYLLDGDNVRHGLNKDLGMSDADRTENIRRVGELSRLMVDAGLIVI 112          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A257J477_9PROT (Multifunctional fusion protein n=1 Tax=Alphaproteobacteria bacterium PA2 TaxID=2015570 RepID=A0A257J477_9PROT)

HSP 1 Score: 132 bits (331), Expect = 4.680e-34
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVLV 258
            R ALKGQRG V+WLTGLSGSGKSTIAN V+ KL AEGRHTY+LDGDNVRHGLN  LGF+  DR EN+RRV EVA+LMVD G+IVLV
Sbjct:  452 RGALKGQRGRVVWLTGLSGSGKSTIANLVEKKLHAEGRHTYLLDGDNVRHGLNRDLGFTDADRVENIRRVAEVAKLMVDAGLIVLV 537          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A227JLW6_9CAUL (Multifunctional fusion protein n=1 Tax=Phenylobacterium zucineum TaxID=284016 RepID=A0A227JLW6_9CAUL)

HSP 1 Score: 132 bits (331), Expect = 4.680e-34
Identity = 67/86 (77.91%), Postives = 74/86 (86.05%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVLV 258
            R ALKGQRG V+WLTGLSGSGKSTIAN V+ KL AEGRHTY+LDGDNVRHGLN  LGF+  DR EN+RRV EVA+LMVD G+IVLV
Sbjct:  452 RGALKGQRGRVVWLTGLSGSGKSTIANLVEKKLHAEGRHTYLLDGDNVRHGLNRDLGFTDADRVENIRRVAEVAKLMVDAGLIVLV 537          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: UPI001F3BC515 (adenylyl-sulfate kinase n=1 Tax=Pseudoalteromonas sp. SMS1 TaxID=2908894 RepID=UPI001F3BC515)

HSP 1 Score: 123 bits (309), Expect = 1.120e-33
Identity = 62/82 (75.61%), Postives = 67/82 (81.71%), Query Frame = 1
Query:    7 ALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIV 252
            ALKG R VVLW TGLSGSGKSTIANAV+ KL   G HTY+LDGDNVRHGLN GL FS EDR EN+RR+ EVA+L VD GIIV
Sbjct:   20 ALKGHRSVVLWYTGLSGSGKSTIANAVEAKLFELGCHTYLLDGDNVRHGLNKGLSFSDEDRVENIRRISEVAKLFVDAGIIV 101          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A517Z6Q1_9PLAN (Adenylyl-sulfate kinase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z6Q1_9PLAN)

HSP 1 Score: 123 bits (309), Expect = 1.150e-33
Identity = 59/85 (69.41%), Postives = 68/85 (80.00%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVL 255
            R  LKG +G VLW TGLSG+GKSTIAN VD KL A G+HTY+LDGDN+RHGLN  LGFS EDR EN+RR+GEVA+L  D G+I L
Sbjct:   21 RKRLKGHKGCVLWFTGLSGAGKSTIANTVDHKLHALGKHTYLLDGDNIRHGLNKNLGFSAEDRAENIRRIGEVAKLFADCGVITL 105          
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Match: A0A0Q8MYK2_9CAUL (Multifunctional fusion protein n=6 Tax=Phenylobacterium TaxID=20 RepID=A0A0Q8MYK2_9CAUL)

HSP 1 Score: 130 bits (328), Expect = 1.220e-33
Identity = 65/86 (75.58%), Postives = 75/86 (87.21%), Query Frame = 1
Query:    1 RWALKGQRGVVLWLTGLSGSGKSTIANAVDVKLTAEGRHTYILDGDNVRHGLNSGLGFSPEDRKENVRRVGEVARLMVDLGIIVLV 258
            R ALKGQRG V+WLTGLSGSGKSTIAN V+ +L A+GRHTY+LDGDNVRHGLN  LGF+ EDR EN+RRV EV++LMVD G+IVLV
Sbjct:  452 RAALKGQRGRVVWLTGLSGSGKSTIANLVEKRLHADGRHTYLLDGDNVRHGLNKDLGFTDEDRVENIRRVAEVSKLMVDAGLIVLV 537          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201855.5708.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZA4_ECTSI4.000e-4994.19Adenylyl-sulfate kinase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3M1VBW0_9BACT2.140e-3674.70Adenylyl-sulfate kinase n=1 Tax=Planctomycetes bac... [more]
A0A836VT28_9PLAN1.010e-3469.41Adenylyl-sulfate kinase n=1 Tax=Planctomycetaceae ... [more]
UPI001FF5B05D2.440e-3471.76adenylyl-sulfate kinase n=1 Tax=Alcanivorax sp. CY... [more]
A0A0B4XQK0_9GAMM3.640e-3473.17Adenylyl-sulfate kinase n=2 Tax=Alcanivorax TaxID=... [more]
A0A257J477_9PROT4.680e-3477.91Multifunctional fusion protein n=1 Tax=Alphaproteo... [more]
A0A227JLW6_9CAUL4.680e-3477.91Multifunctional fusion protein n=1 Tax=Phenylobact... [more]
UPI001F3BC5151.120e-3375.61adenylyl-sulfate kinase n=1 Tax=Pseudoalteromonas ... [more]
A0A517Z6Q1_9PLAN1.150e-3369.41Adenylyl-sulfate kinase n=1 Tax=Maioricimonas rari... [more]
A0A0Q8MYK2_9CAUL1.220e-3375.58Multifunctional fusion protein n=6 Tax=Phenylobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201855contigH-elongata_contig201855:2..836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size225
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201855.5708.1prot_H-elongata_contig201855.5708.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201855 2..801 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.1433861-CDS-H-elongata_contig201855:1..1951622930136.1433861-CDS-H-elongata_contig201855:1..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201855 2..195 -
1691679294.6959867-CDS-H-elongata_contig201855:1..1951691679294.6959867-CDS-H-elongata_contig201855:1..195Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201855 2..195 -
1622930136.1605735-CDS-H-elongata_contig201855:770..8011622930136.1605735-CDS-H-elongata_contig201855:770..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201855 771..801 -
1691679294.7131338-CDS-H-elongata_contig201855:770..8011691679294.7131338-CDS-H-elongata_contig201855:770..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201855 771..801 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930136.1810284-UTR-H-elongata_contig201855:801..8361622930136.1810284-UTR-H-elongata_contig201855:801..836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201855 802..836 -
1691679294.7242932-UTR-H-elongata_contig201855:801..8361691679294.7242932-UTR-H-elongata_contig201855:801..836Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201855 802..836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201855.5708.1

>prot_H-elongata_contig201855.5708.1 ID=prot_H-elongata_contig201855.5708.1|Name=mRNA_H-elongata_contig201855.5708.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=75bp
MAHGAQRVRKEHNRKCCRRKAHRRGAPHVHLRWRQRPSRPQQRPRVLPRR
QKRERSESGGSRASDGRSWHHCACA
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mRNA from alignment at H-elongata_contig201855:2..836-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201855.5708.1 ID=mRNA_H-elongata_contig201855.5708.1|Name=mRNA_H-elongata_contig201855.5708.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=835bp|location=Sequence derived from alignment at H-elongata_contig201855:2..836- (Himanthalia elongata Himel1 dioecious)
AGGTGGGCACTTAAAGGCCAGCGAGGGGTCGTTCTATGGCTCACGGGGCT CAGCGGGTCCGGAAAGGTGATGACTCAATGTGCCGTAGAAATCGCACGTC TATAGCGACAGTTCGGTCTATAGCGACAGTTTGTGCTTCATTAATTCAGC AGGGTCTATAGCGACAGTTTGTGCTTCGAATATTCCCAAGCCAACGAGCC GCGCTGTAGAGCCAGTTGCCGCACGATAGCTCAAATATTATCGCGTACGA TATAAGTATGTGGTAAGTAGTAGTCGATTATGTGTAATATTTCCTCTGTG AGCCATTTTGATATTATGTTATTATTAGGGTCAGGGTTAGGGTTATTAGG ACATCTTCGCGAGCCTTGAGCGTTCCCGGCTGCAGGAGCGACAAGCCGTC CGATCGTACTTGTATCAGTAATGGGTAACTCTTCCAGTATCTCAATGTTG AAAATAATGTATTTTTAATAGCAGAAACACGCAAAAACACGCGGGATGTA GATTATGTTGTGCAATTGAGATTGAGGTTTAGGGCTGGGGCTAGGGCGAG CACTCCGCACCGTTAGTCGAAATCCGACGCTTCTTCATGTTCAGAGTAGA CATCCCTAACCCTAACCCTAACCCTAACTCGTGGTTCGCAGAGCACAATC GCAAATGCTGTCGACGTAAAGCTCACCGCAGAGGGGCGCCACACGTACAT CTTAGATGGCGACAACGTCCGTCACGGCCTCAACAGCGGCCTAGGGTTCT CCCCAGAAGACAGAAAAGAGAACGTTCGGAGAGTGGGGGAAGTCGCGCGT CTGATGGTCGATCTTGGCATCATTGTGCTTGTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig201855:2..836-

>mRNA_H-elongata_contig201855.5708.1 ID=mRNA_H-elongata_contig201855.5708.1|Name=mRNA_H-elongata_contig201855.5708.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=450bp|location=Sequence derived from alignment at H-elongata_contig201855:2..836- (Himanthalia elongata Himel1 dioecious)
ATGGCTCACGGGGCTCAGCGGGTCCGGAAAGATGGCTCACGGGGCTCAGC
GGGTCCGGAAAGAGCACAATCGCAAATGCTGTCGACGTAAAGCTCACCGC
AGAGGGGCGCCACACGTACATCTTAGATGGCGACAACGTCCGTCACGGCC
TCAACAGCGGCCTAGGGTTCTCCCCAGAAGACAGAAAAGAGAACGTTCGG
AGAGTGGGGGAAGTCGCGCGTCTGATGGTCGATCTTGGCATCATTGTGCT
TGTGCCAGCACAATCGCAAATGCTGTCGACGTAAAGCTCACCGCAGAGGG
GCGCCACACGTACATCTTAGATGGCGACAACGTCCGTCACGGCCTCAACA
GCGGCCTAGGGTTCTCCCCAGAAGACAGAAAAGAGAACGTTCGGAGAGTG
GGGGAAGTCGCGCGTCTGATGGTCGATCTTGGCATCATTGTGCTTGTGCC
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