mRNA_H-elongata_contig20138.5681.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE) HSP 1 Score: 139 bits (351), Expect = 1.410e-38 Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query: 22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
AS ++ PKR DE G+WP ++A+ ++W+S +RP I AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI + G L L ++ DA YA +DRRSVSG+A +G T +S S TQ V+LS++EAEY+
Sbjct: 61 ASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 195
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.270e-37 Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query: 37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
+L PKR DE+ G+WP ++A+ ++W+S +RP + AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ L L ++ DA YA +DRRSVSG+A +G T VS S TQ V+LS++EAEY+
Sbjct: 20 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRESGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 149
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KJ49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ49_9PHAE) HSP 1 Score: 137 bits (345), Expect = 1.350e-37 Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query: 37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
+L PKR DE+ G+WP ++A+ ++W+S +RP + AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G L L ++ DA YA +DRRSVSG+A +G T VS TQ V+LS++EAEY+
Sbjct: 94 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGRKTQSIVSLSSTEAEYI 223
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE) HSP 1 Score: 138 bits (348), Expect = 3.790e-37 Identity = 69/135 (51.11%), Postives = 94/135 (69.63%), Query Frame = 1
Query: 22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEY 426
AS +L PKR DE G+WP ++A+ ++W+S +RP + AVRAVA +AH PA RHW A++KI+ YLK T+DLGI ++ G L L ++ DA YA DDRRSVSG+A +G T +S S TQ V+LS++EAEY
Sbjct: 188 ASPGVDLGPKRDDENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANT-DDRRSVSGLATTVGGTVISHGSKTQSIVSLSSTEAEY 321
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5JMP9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP9_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.100e-37 Identity = 66/128 (51.56%), Postives = 93/128 (72.66%), Query Frame = 1
Query: 46 PKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
PKR D++ G+WP ++A+ ++W+S +RP + AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G L L ++ DA YA +DRRSVSG+A +G T VS S TQ V+LS++EAEY+
Sbjct: 153 PKREDKERGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 279
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE) HSP 1 Score: 135 bits (340), Expect = 9.830e-37 Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1
Query: 46 PKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
P R DE+ G+WP ++A+ ++W+S +RP + AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G L L ++ DA YA +DRRSVSG+A +G T VS S TQ V+LS +EAEY+
Sbjct: 27 PTREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYI 153
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE) HSP 1 Score: 139 bits (350), Expect = 2.590e-36 Identity = 68/131 (51.91%), Postives = 95/131 (72.52%), Query Frame = 1
Query: 37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
+L PKR DE+ G+WP ++A+ ++W+S +RP + AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G L L ++ DA YA +DRRSVSG+A +G T VS S TQ V+LS++EAEY+
Sbjct: 299 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 428
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 139 bits (351), Expect = 3.960e-36 Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query: 22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
AS ++ PKR DE G+WP ++A+ ++W+S +RP I AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI + G L L ++ DA YA +DRRSVSG+A +G T +S S TQ V+LS++EAEY+
Sbjct: 270 ASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 404
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 140 bits (352), Expect = 4.190e-36 Identity = 70/140 (50.00%), Postives = 95/140 (67.86%), Query Frame = 1
Query: 10 TQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
T+ S PKR DE G+WP ++A+ ++W+S +RP I AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI + G L L ++ DA YA +DRRSVSG+A +G T +S S TQ V+LS++EAEY+
Sbjct: 353 TELSTESPIGKRPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 491
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE) HSP 1 Score: 140 bits (354), Expect = 5.610e-36 Identity = 70/140 (50.00%), Postives = 96/140 (68.57%), Query Frame = 1
Query: 10 TQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
T+ S PKR DE G+WP ++A+ ++W+S +RP I AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI ++ G L L ++ DA YA +DRRSVSG+A +G T +S S TQ V+LS++EAEY+
Sbjct: 952 TELSTESPIGKRPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 1090 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20138.5681.1 >prot_H-elongata_contig20138.5681.1 ID=prot_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp HYKTQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVback to top mRNA from alignment at H-elongata_contig20138:458..889- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20138.5681.1 ID=mRNA_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig20138:458..889- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20138:458..889- >mRNA_H-elongata_contig20138.5681.1 ID=mRNA_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig20138:458..889- (Himanthalia elongata Himel1 dioecious)back to top |