mRNA_H-elongata_contig20138.5681.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20138.5681.1
Unique NamemRNA_H-elongata_contig20138.5681.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 1.410e-38
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            AS   ++ PKR DE  G+WP ++A+  ++W+S  +RP I  AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI +  G  L L ++ DA YA   +DRRSVSG+A  +G T +S  S TQ  V+LS++EAEY+
Sbjct:   61 ASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 195          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGY9_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.270e-37
Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            +L PKR DE+ G+WP ++A+  ++W+S  +RP +  AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++    L L ++ DA YA   +DRRSVSG+A  +G T VS  S TQ  V+LS++EAEY+
Sbjct:   20 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRESGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 149          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KJ49_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ49_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.350e-37
Identity = 67/131 (51.15%), Postives = 94/131 (71.76%), Query Frame = 1
Query:   37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            +L PKR DE+ G+WP ++A+  ++W+S  +RP +  AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G  L L ++ DA YA   +DRRSVSG+A  +G T VS    TQ  V+LS++EAEY+
Sbjct:   94 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGRKTQSIVSLSSTEAEYI 223          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5K616_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K616_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 3.790e-37
Identity = 69/135 (51.11%), Postives = 94/135 (69.63%), Query Frame = 1
Query:   22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEY 426
            AS   +L PKR DE  G+WP ++A+  ++W+S  +RP +  AVRAVA +AH PA RHW A++KI+ YLK T+DLGI ++ G  L L ++ DA YA   DDRRSVSG+A  +G T +S  S TQ  V+LS++EAEY
Sbjct:  188 ASPGVDLGPKRDDENGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVAHHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLTVYVDASYANT-DDRRSVSGLATTVGGTVISHGSKTQSIVSLSSTEAEY 321          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5JMP9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP9_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.100e-37
Identity = 66/128 (51.56%), Postives = 93/128 (72.66%), Query Frame = 1
Query:   46 PKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            PKR D++ G+WP ++A+  ++W+S  +RP +  AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G  L L ++ DA YA   +DRRSVSG+A  +G T VS  S TQ  V+LS++EAEY+
Sbjct:  153 PKREDKERGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 279          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 9.830e-37
Identity = 66/128 (51.56%), Postives = 91/128 (71.09%), Query Frame = 1
Query:   46 PKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            P R DE+ G+WP ++A+  ++W+S  +RP +  AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G  L L ++ DA YA   +DRRSVSG+A  +G T VS  S TQ  V+LS +EAEY+
Sbjct:   27 PTREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYI 153          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KTL3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL3_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 2.590e-36
Identity = 68/131 (51.91%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   37 NLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            +L PKR DE+ G+WP ++A+  ++W+S  +RP +  AVRAVAR+AH PA RHW A++KI+ YLK T+DLGI ++ G  L L ++ DA YA   +DRRSVSG+A  +G T VS  S TQ  V+LS++EAEY+
Sbjct:  299 DLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADT-EDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYI 428          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.960e-36
Identity = 70/136 (51.47%), Postives = 96/136 (70.59%), Query Frame = 1
Query:   22 ASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            AS   ++ PKR DE  G+WP ++A+  ++W+S  +RP I  AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI +  G  L L ++ DA YA   +DRRSVSG+A  +G T +S  S TQ  V+LS++EAEY+
Sbjct:  270 ASPGVDIGPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 404          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.190e-36
Identity = 70/140 (50.00%), Postives = 95/140 (67.86%), Query Frame = 1
Query:   10 TQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            T+ S        PKR DE  G+WP ++A+  ++W+S  +RP I  AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI +  G  L L ++ DA YA   +DRRSVSG+A  +G T +S  S TQ  V+LS++EAEY+
Sbjct:  353 TELSTESPIGKRPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 491          
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Match: A0A6H5K4H5_9PHAE (CCHC-type domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4H5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.610e-36
Identity = 70/140 (50.00%), Postives = 96/140 (68.57%), Query Frame = 1
Query:   10 TQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAVRAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADADYAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV 429
            T+ S        PKR DE  G+WP ++A+  ++W+S  +RP I  AVRAVAR+AH PA RHWKA+ KI++YLK T+DLGI ++ G  L L ++ DA YA   +DRRSVSG+A  +G T +S  S TQ  V+LS++EAEY+
Sbjct:  952 TELSTESPIGKRPKRDDESGGEWPVREAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYI 1090          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20138.5681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTI8_9PHAE1.410e-3851.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGY9_9PHAE1.270e-3751.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ49_9PHAE1.350e-3751.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K616_9PHAE3.790e-3751.11Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMP9_9PHAE6.100e-3751.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KPN5_9PHAE9.830e-3751.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTL3_9PHAE2.590e-3651.91Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE3.960e-3651.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGX6_9PHAE4.190e-3650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4H5_9PHAE5.610e-3650.00CCHC-type domain-containing protein n=11 Tax=Ectoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20138contigH-elongata_contig20138:458..889 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score107.5
Seed ortholog evalue5.4e-21
Seed eggNOG ortholog7029.ACYPI067959-PA
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A5XY@33154,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size432
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930133.237154-CDS-H-elongata_contig20138:457..8891622930133.237154-CDS-H-elongata_contig20138:457..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20138 458..889 -
1691679293.526839-CDS-H-elongata_contig20138:457..8891691679293.526839-CDS-H-elongata_contig20138:457..889Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20138 458..889 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20138.5681.1prot_H-elongata_contig20138.5681.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20138 458..889 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20138.5681.1

>prot_H-elongata_contig20138.5681.1 ID=prot_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
HYKTQTSASLEFNLEPKRVDEKEGDWPYKQAVDDLLWISGMTRPKIVTAV
RAVARYAHNPAARHWKAVRKIISYLKATKDLGILFRWGGNLKLYLFADAD
YAGRCDDRRSVSGVADFLGNTAVSTISTTQHCVTLSTSEAEYV*
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mRNA from alignment at H-elongata_contig20138:458..889-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20138.5681.1 ID=mRNA_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=432bp|location=Sequence derived from alignment at H-elongata_contig20138:458..889- (Himanthalia elongata Himel1 dioecious)
CACTATAAGACCCAAACTTCCGCGTCTTTAGAGTTTAATCTTGAACCGAA GAGGGTTGACGAGAAAGAGGGCGATTGGCCTTACAAACAAGCGGTTGATG ATCTGTTGTGGATCTCTGGGATGACGCGACCGAAAATAGTCACTGCAGTT AGGGCAGTGGCACGATATGCCCACAATCCGGCGGCGCGGCATTGGAAGGC AGTTCGTAAGATAATTTCCTACCTTAAAGCAACCAAGGATCTGGGGATTT TGTTTCGGTGGGGAGGGAACTTGAAGCTGTATTTGTTCGCTGACGCGGAT TACGCCGGCAGGTGTGACGACAGACGGTCGGTTTCAGGTGTTGCGGACTT TCTCGGAAATACAGCTGTTAGTACAATCAGTACGACGCAGCATTGCGTGA CATTATCTACGAGTGAGGCGGAATATGTGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig20138:458..889-

>mRNA_H-elongata_contig20138.5681.1 ID=mRNA_H-elongata_contig20138.5681.1|Name=mRNA_H-elongata_contig20138.5681.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig20138:458..889- (Himanthalia elongata Himel1 dioecious)
CACTATAAGACCCAAACTTCCGCGTCTTTAGAGTTTAATCTTGAACCGAA
GAGGGTTGACGAGAAAGAGGGCGATTGGCCTTACAAACAAGCGGTTGATG
ATCTGTTGTGGATCTCTGGGATGACGCGACCGAAAATAGTCACTGCAGTT
AGGGCAGTGGCACGATATGCCCACAATCCGGCGGCGCGGCATTGGAAGGC
AGTTCGTAAGATAATTTCCTACCTTAAAGCAACCAAGGATCTGGGGATTT
TGTTTCGGTGGGGAGGGAACTTGAAGCTGTATTTGTTCGCTGACGCGGAT
TACGCCGGCAGGTGTGACGACAGACGGTCGGTTTCAGGTGTTGCGGACTT
TCTCGGAAATACAGCTGTTAGTACAATCAGTACGACGCAGCATTGCGTGA
CATTATCTACGAGTGAGGCGGAATATGTGTAACACTATAAGACCCAAACT
TCCGCGTCTTTAGAGTTTAATCTTGAACCGAAGAGGGTTGACGAGAAAGA
GGGCGATTGGCCTTACAAACAAGCGGTTGATGATCTGTTGTGGATCTCTG
GGATGACGCGACCGAAAATAGTCACTGCAGTTAGGGCAGTGGCACGATAT
GCCCACAATCCGGCGGCGCGGCATTGGAAGGCAGTTCGTAAGATAATTTC
CTACCTTAAAGCAACCAAGGATCTGGGGATTTTGTTTCGGTGGGGAGGGA
ACTTGAAGCTGTATTTGTTCGCTGACGCGGATTACGCCGGCAGGTGTGAC
GACAGACGGTCGGTTTCAGGTGTTGCGGACTTTCTCGGAAATACAGCTGT
TAGTACAATCAGTACGACGCAGCATTGCGTGACATTATCTACGAGTGAGG
CGGAATATGTGTAA
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