mRNA_H-elongata_contig20127.5674.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 414 bits (1065), Expect = 5.720e-137 Identity = 196/248 (79.03%), Postives = 224/248 (90.32%), Query Frame = 1
Query: 1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
+VVVGNM++EVERAPLPILHHN+DIWTDKGSGRKFLGLHVFYV FE+KDALLS+KRY+P QG+LGD +AS+VL +IMKS+L EFGLKPS+LASGTTDSGSDV AVS N LW Y V W WCFCHLMVKAAEQA+GIHLDPAKSKNP+AR++L+ V+KVVENLNKS N +AKFEDLQV++LGEIFK+VKHAPQRWLS TRT+ER IRLWHVLRK+YSDEG+NFPL+EGD + ILQLYSLLQPLS I
Sbjct: 239 KVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSI 486
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE) HSP 1 Score: 351 bits (901), Expect = 3.680e-115 Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1
Query: 19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
M+EEV APLPILHH +DIW DK SGRKFLG+HVFYVT FE+K LLS+KRY P+Q ALG+AKA+EVLLEI+++ILHEFG +PS+LASGTTDSGSDV +VSVNGL YGV W WC+CHLM+KAAE AFG H DP KSKNP+A +L+N+I +V L+KS NL AKFEDLQV+LLGE+ KI APQRWL+ RT+ERVIRLWHVLRK+YSD GKNF L+EGDN + I QLYSLLQ LS +
Sbjct: 1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQDALGEAKAAEVLLEILEAILHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSV 242
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 332 bits (851), Expect = 4.990e-110 Identity = 166/248 (66.94%), Postives = 197/248 (79.44%), Query Frame = 1
Query: 1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
+ V+G+M+ EV APLPILHH +DIWTDK SGRKFLG+H+FYVT FE+K AL+S AKA+EVLL+I++S+LHEFGL+ S+LASGTTDSGSDV +VSVNGL YGV W WC CHLMVKAAE AFG H DP KSKNP+ R++L+NVI +V L+KS NL AKFED+QV+LLGEI KI APQRWL+ RTLERVIRLWHVLRK++SD GK FPL+EGDN + ILQLYSLLQPLS +
Sbjct: 165 KAVLGDMLVEVRSAPLPILHHMIDIWTDKPSGRKFLGVHLFYVTANFELKQALIS-------------AKAAEVLLKILESVLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSV 399
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE) HSP 1 Score: 323 bits (829), Expect = 4.360e-106 Identity = 162/242 (66.94%), Postives = 192/242 (79.34%), Query Frame = 1
Query: 19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
M+EEV APLPILHH +DIW DK SGRKFLG+HVFYVT FE+K LLS ALG+ KA+EVLLEI+++IL+EFGL+PS+LASGTTDSGSDV +VSVNGL YGV W WC+CHLMVKAAE AFG DP SKNP+AR +L+N+I ++ L+KS NL AKFEDLQV+LLGE+ I APQRWL+ RT+ERVIRLW V+RK+YSD GKNFPL+EGDN + I QLYSLLQPLS +
Sbjct: 1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEVKAAEVLLEILEAILNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSV 233
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE) HSP 1 Score: 288 bits (738), Expect = 3.700e-94 Identity = 147/248 (59.27%), Postives = 179/248 (72.18%), Query Frame = 1
Query: 1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
+ V+ NM+EEV+ APLPILHH +DIWTDKGSGRK L +R P VLLEI+K+ILHEFGL+ S+LASGT DSGSDV +VS NGL +GV W WCFCHLMVKAAE FG H+DP KSKNP+AR++L+ +I +V L++SSN +AKF+DLQV++LGE+ KI AP+RWL+ RTLERVIRLWHVLRK+YSD GK FPL+EGDN + ILQLYSLLQP S +
Sbjct: 36 KAVMSNMLEEVKNAPLPILHHMIDIWTDKGSGRKTLW-------------------ERPRPG-----------VLLEIVKAILHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSV 253
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE) HSP 1 Score: 292 bits (747), Expect = 1.430e-93 Identity = 141/193 (73.06%), Postives = 164/193 (84.97%), Query Frame = 1
Query: 166 VKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
+KRYSP+Q ALG+A ASEVLLEI KSIL EFGL+PS+LASGTTDSGSDV + SVNGL+ YGV W WCFCHLMVKAAE FG H+DP KSKNP+AR++L+NVI +V LN+SSN +AKFEDLQV+LLG++ KI APQRWL+ RTLERVIRLWHVLRK+YSD GKNFPL+EGDN N ILQL+SLLQ LS +
Sbjct: 10 IKRYSPSQDALGEAAASEVLLEIFKSILREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSV 202
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE) HSP 1 Score: 281 bits (718), Expect = 5.420e-91 Identity = 141/186 (75.81%), Postives = 160/186 (86.02%), Query Frame = 1
Query: 1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALL--SVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGE 552
+VVVGNM+EEV +APLP+LHH +DIWT+KGSGRKFLG+H++YVT FEMK ALL VKRYSP QGAL +A+ASEVLLEI+KSIL E GL PS+LASGTTDSGSDV AVSVNGL YGV W WC CH+MVKAAEQAFG+H DP KSKNP AR++++ VIKVVENLNKSS LRAKFEDLQ ELLGE
Sbjct: 93 KVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQGALSEARASEVLLEIVKSILVEVGLSPSDLASGTTDSGSDVKAVSVNGLHPHYGVLWNWCACHMMVKAAEQAFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSYLRAKFEDLQTELLGE 278
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE) HSP 1 Score: 283 bits (725), Expect = 2.330e-90 Identity = 135/246 (54.88%), Postives = 181/246 (73.58%), Query Frame = 1
Query: 7 VVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
VVGNM EE+ +APLPI+H+ +D+WT K SGRK+LG+HVFYV F ++ AL+SVK Y+P+ G KASE+L I ++ L E+G+K S+LA GTTDSGSDV A+ VN L + + W WC CHL K+AE FG DP +SKN AR++++ VIK +N+S+ ++ KFE + +E+L EI KI KHAPQRWLS +ER+IRLWHVLRK+Y+++G+ FPL +G+N + ILQLYSLLQPLS I
Sbjct: 205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAI 450
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE) HSP 1 Score: 273 bits (698), Expect = 2.350e-84 Identity = 163/371 (43.94%), Postives = 193/371 (52.02%), Query Frame = 1
Query: 19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTD---------------------------------------------------------------------------------------------------------------------------------SGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
M+EEV APLPILHH +DIW DK SGRKFLG+HVFYVT FE+K LLS ALG+AKA+EVL+EI+++ILHEFGL+PS+LASGTTD SGSDV +VSVNGL YGV W WC+CHLMVKAAE AFG DP SKNP+AR +L+N+I ++ L+KS NL AKFEDLQV+LLGE+ I APQRWL+ RT+ERVIRLW V+RK+YSD GKNFPL+EGDN + I QLYSLLQPLS +
Sbjct: 1 MLEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEAKAAEVLVEILEAILHEFGLRPSDLASGTTDKRYRPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSV 362
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 273 bits (699), Expect = 2.110e-83 Identity = 129/248 (52.02%), Postives = 175/248 (70.56%), Query Frame = 1
Query: 1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
+ VVGNM+ E+ERAPLPI+H+ +D+W K +G K++ +HV YV E++ LL+VK Y+P+ KASE+L + S+L EFG+K S+LA GTTDSGSDV A+ VN L + W WC CHL +AAEQAFG DP K KN AR +++ VIK +N+S + KF++ Q+++ GE+ KI KHAPQRWLS R +ER+IRLWHVLRK+Y+++G FPL +GDN + ILQLYSLL+PL+ I
Sbjct: 222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAI 469 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20127.5674.1 >prot_H-elongata_contig20127.5674.1 ID=prot_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVback to top mRNA from alignment at H-elongata_contig20127:2381..3493- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20127.5674.1 ID=mRNA_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1113bp|location=Sequence derived from alignment at H-elongata_contig20127:2381..3493- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20127:2381..3493- >mRNA_H-elongata_contig20127.5674.1 ID=mRNA_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig20127:2381..3493- (Himanthalia elongata Himel1 dioecious)back to top |