mRNA_H-elongata_contig20127.5674.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20127.5674.1
Unique NamemRNA_H-elongata_contig20127.5674.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 414 bits (1065), Expect = 5.720e-137
Identity = 196/248 (79.03%), Postives = 224/248 (90.32%), Query Frame = 1
Query:    1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            +VVVGNM++EVERAPLPILHHN+DIWTDKGSGRKFLGLHVFYV   FE+KDALLS+KRY+P QG+LGD +AS+VL +IMKS+L EFGLKPS+LASGTTDSGSDV AVS N LW  Y V W WCFCHLMVKAAEQA+GIHLDPAKSKNP+AR++L+ V+KVVENLNKS N +AKFEDLQV++LGEIFK+VKHAPQRWLS TRT+ER IRLWHVLRK+YSDEG+NFPL+EGD  + ILQLYSLLQPLS I
Sbjct:  239 KVVVGNMVQEVERAPLPILHHNIDIWTDKGSGRKFLGLHVFYVDANFELKDALLSIKRYAPDQGSLGDQRASDVLFQIMKSVLEEFGLKPSHLASGTTDSGSDVKAVSTNCLWPMYAVLWCWCFCHLMVKAAEQAYGIHLDPAKSKNPQARDILKKVVKVVENLNKSPNFKAKFEDLQVDMLGEIFKMVKHAPQRWLSLTRTVERTIRLWHVLRKLYSDEGRNFPLEEGDTKDAILQLYSLLQPLSSI 486          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JB08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB08_9PHAE)

HSP 1 Score: 351 bits (901), Expect = 3.680e-115
Identity = 170/242 (70.25%), Postives = 200/242 (82.64%), Query Frame = 1
Query:   19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            M+EEV  APLPILHH +DIW DK SGRKFLG+HVFYVT  FE+K  LLS+KRY P+Q ALG+AKA+EVLLEI+++ILHEFG +PS+LASGTTDSGSDV +VSVNGL   YGV W WC+CHLM+KAAE AFG H DP KSKNP+A  +L+N+I +V  L+KS NL AKFEDLQV+LLGE+ KI   APQRWL+  RT+ERVIRLWHVLRK+YSD GKNF L+EGDN + I QLYSLLQ LS +
Sbjct:    1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLSIKRYRPSQDALGEAKAAEVLLEILEAILHEFGRRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMIKAAEDAFGTHPDPQKSKNPEAHNMLKNLIGIVGTLHKSLNLTAKFEDLQVDLLGEVLKIPNQAPQRWLTLVRTMERVIRLWHVLRKLYSDAGKNFILEEGDNKDCIPQLYSLLQSLSSV 242          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 4.990e-110
Identity = 166/248 (66.94%), Postives = 197/248 (79.44%), Query Frame = 1
Query:    1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            + V+G+M+ EV  APLPILHH +DIWTDK SGRKFLG+H+FYVT  FE+K AL+S             AKA+EVLL+I++S+LHEFGL+ S+LASGTTDSGSDV +VSVNGL   YGV W WC CHLMVKAAE AFG H DP KSKNP+ R++L+NVI +V  L+KS NL AKFED+QV+LLGEI KI   APQRWL+  RTLERVIRLWHVLRK++SD GK FPL+EGDN + ILQLYSLLQPLS +
Sbjct:  165 KAVLGDMLVEVRSAPLPILHHMIDIWTDKPSGRKFLGVHLFYVTANFELKQALIS-------------AKAAEVLLKILESVLHEFGLRASDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCCCHLMVKAAEDAFGTHPDPQKSKNPEGRKMLKNVIGMVGTLHKSPNLTAKFEDVQVDLLGEILKIPNQAPQRWLTLVRTLERVIRLWHVLRKLHSDAGKTFPLEEGDNKDCILQLYSLLQPLSSV 399          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JZ66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ66_9PHAE)

HSP 1 Score: 323 bits (829), Expect = 4.360e-106
Identity = 162/242 (66.94%), Postives = 192/242 (79.34%), Query Frame = 1
Query:   19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            M+EEV  APLPILHH +DIW DK SGRKFLG+HVFYVT  FE+K  LLS         ALG+ KA+EVLLEI+++IL+EFGL+PS+LASGTTDSGSDV +VSVNGL   YGV W WC+CHLMVKAAE AFG   DP  SKNP+AR +L+N+I ++  L+KS NL AKFEDLQV+LLGE+  I   APQRWL+  RT+ERVIRLW V+RK+YSD GKNFPL+EGDN + I QLYSLLQPLS +
Sbjct:    1 MVEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEVKAAEVLLEILEAILNEFGLRPSDLASGTTDSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSV 233          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5L8D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D8_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 3.700e-94
Identity = 147/248 (59.27%), Postives = 179/248 (72.18%), Query Frame = 1
Query:    1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            + V+ NM+EEV+ APLPILHH +DIWTDKGSGRK L                    +R  P            VLLEI+K+ILHEFGL+ S+LASGT DSGSDV +VS NGL   +GV W WCFCHLMVKAAE  FG H+DP KSKNP+AR++L+ +I +V  L++SSN +AKF+DLQV++LGE+ KI   AP+RWL+  RTLERVIRLWHVLRK+YSD GK FPL+EGDN + ILQLYSLLQP S +
Sbjct:   36 KAVMSNMLEEVKNAPLPILHHMIDIWTDKGSGRKTLW-------------------ERPRPG-----------VLLEIVKAILHEFGLRTSDLASGTADSGSDVKSVSFNGLHPQFGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKKLINLVGTLHRSSNFKAKFDDLQVDVLGEVLKIPNQAPKRWLTLVRTLERVIRLWHVLRKLYSDTGKTFPLEEGDNKDCILQLYSLLQPPSSV 253          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KEE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE6_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 1.430e-93
Identity = 141/193 (73.06%), Postives = 164/193 (84.97%), Query Frame = 1
Query:  166 VKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            +KRYSP+Q ALG+A ASEVLLEI KSIL EFGL+PS+LASGTTDSGSDV + SVNGL+  YGV W WCFCHLMVKAAE  FG H+DP KSKNP+AR++L+NVI +V  LN+SSN +AKFEDLQV+LLG++ KI   APQRWL+  RTLERVIRLWHVLRK+YSD GKNFPL+EGDN N ILQL+SLLQ LS +
Sbjct:   10 IKRYSPSQDALGEAAASEVLLEIFKSILREFGLRPSDLASGTTDSGSDVKSASVNGLYPQYGVLWNWCFCHLMVKAAEDGFGTHVDPQKSKNPEARDMLKNVISMVGTLNRSSNFKAKFEDLQVDLLGDVLKIPNQAPQRWLTQVRTLERVIRLWHVLRKLYSDAGKNFPLEEGDNKNAILQLFSLLQSLSSV 202          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 281 bits (718), Expect = 5.420e-91
Identity = 141/186 (75.81%), Postives = 160/186 (86.02%), Query Frame = 1
Query:    1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALL--SVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGE 552
            +VVVGNM+EEV +APLP+LHH +DIWT+KGSGRKFLG+H++YVT  FEMK ALL   VKRYSP QGAL +A+ASEVLLEI+KSIL E GL PS+LASGTTDSGSDV AVSVNGL   YGV W WC CH+MVKAAEQAFG+H DP KSKNP AR++++ VIKVVENLNKSS LRAKFEDLQ ELLGE
Sbjct:   93 KVVVGNMLEEVRKAPLPVLHHMIDIWTEKGSGRKFLGVHLYYVTASFEMKHALLCVGVKRYSPDQGALSEARASEVLLEIVKSILVEVGLSPSDLASGTTDSGSDVKAVSVNGLHPHYGVLWNWCACHMMVKAAEQAFGVHPDPTKSKNPGARDVIKVVIKVVENLNKSSYLRAKFEDLQTELLGE 278          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 2.330e-90
Identity = 135/246 (54.88%), Postives = 181/246 (73.58%), Query Frame = 1
Query:    7 VVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            VVGNM EE+ +APLPI+H+ +D+WT K SGRK+LG+HVFYV   F ++ AL+SVK Y+P+    G  KASE+L  I ++ L E+G+K S+LA GTTDSGSDV A+ VN L   + + W WC CHL  K+AE  FG   DP +SKN  AR++++ VIK    +N+S+ ++ KFE + +E+L EI KI KHAPQRWLS    +ER+IRLWHVLRK+Y+++G+ FPL +G+N + ILQLYSLLQPLS I
Sbjct:  205 VVGNMQEEINKAPLPIIHYGLDLWTCKVSGRKYLGVHVFYVDSNFSLRHALISVKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWWDWCDCHLADKSAENTFGTSADPQQSKNKIARDVIKLVIKTAAKINQSTIVKQKFEKVTLEMLDEILKITKHAPQRWLSLVLVMERIIRLWHVLRKVYANDGEEFPLDKGNNRDDILQLYSLLQPLSAI 450          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5K0P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P1_9PHAE)

HSP 1 Score: 273 bits (698), Expect = 2.350e-84
Identity = 163/371 (43.94%), Postives = 193/371 (52.02%), Query Frame = 1
Query:   19 MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTD---------------------------------------------------------------------------------------------------------------------------------SGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            M+EEV  APLPILHH +DIW DK SGRKFLG+HVFYVT  FE+K  LLS         ALG+AKA+EVL+EI+++ILHEFGL+PS+LASGTTD                                                                                                                                 SGSDV +VSVNGL   YGV W WC+CHLMVKAAE AFG   DP  SKNP+AR +L+N+I ++  L+KS NL AKFEDLQV+LLGE+  I   APQRWL+  RT+ERVIRLW V+RK+YSD GKNFPL+EGDN + I QLYSLLQPLS +
Sbjct:    1 MLEEVRNAPLPILHHMIDIWADKPSGRKFLGVHVFYVTANFELKQTLLS--------DALGEAKAAEVLVEILEAILHEFGLRPSDLASGTTDKRYRPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGSDVKSVSVNGLHPKYGVLWNWCYCHLMVKAAEDAFGTRPDPQMSKNPEARNMLKNLIGIIGTLHKS-NLTAKFEDLQVDLLGEVLNIPNQAPQRWLTLVRTMERVIRLWRVMRKLYSDAGKNFPLEEGDNKDCINQLYSLLQPLSSV 362          
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 2.110e-83
Identity = 129/248 (52.02%), Postives = 175/248 (70.56%), Query Frame = 1
Query:    1 QVVVGNMMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSVKRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNAVSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRNVIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERVIRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI 744
            + VVGNM+ E+ERAPLPI+H+ +D+W  K +G K++ +HV YV    E++  LL+VK Y+P+       KASE+L  +  S+L EFG+K S+LA GTTDSGSDV A+ VN L   +   W WC CHL  +AAEQAFG   DP K KN  AR +++ VIK    +N+S   + KF++ Q+++ GE+ KI KHAPQRWLS  R +ER+IRLWHVLRK+Y+++G  FPL +GDN + ILQLYSLL+PL+ I
Sbjct:  222 KAVVGNMLTEIERAPLPIVHYGIDLWQCKITGLKYIDVHVCYVNSNLELQHELLAVKHYAPSAAVQATGKASEILFNVFNSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSWDWCVCHLADRAAEQAFGTSADPQKPKNKDARGVVQLVIKAAAKVNQSPIFKQKFDEAQLQMTGEVLKIRKHAPQRWLSLVRVMERIIRLWHVLRKVYANDGVEFPLDKGDNKDNILQLYSLLRPLAAI 469          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20127.5674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE5.720e-13779.03Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JB08_9PHAE3.680e-11570.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS21_9PHAE4.990e-11066.94Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JZ66_9PHAE4.360e-10666.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L8D8_9PHAE3.700e-9459.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE6_9PHAE1.430e-9373.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ81_9PHAE5.420e-9175.81Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JYQ2_9PHAE2.330e-9054.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0P1_9PHAE2.350e-8443.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE2.110e-8352.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20127contigH-elongata_contig20127:2381..3493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.0
Seed ortholog evalue2.8e-30
Seed eggNOG ortholog2880.D7G4Z8
EggNOG OGs2CZK4@1,2SARG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size744
Cds size726
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20127.5674.1prot_H-elongata_contig20127.5674.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20127 2381..3475 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.6876628-CDS-H-elongata_contig20127:2380..29591622930132.6876628-CDS-H-elongata_contig20127:2380..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20127 2381..2959 -
1691679293.2834852-CDS-H-elongata_contig20127:2380..29591691679293.2834852-CDS-H-elongata_contig20127:2380..2959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20127 2381..2959 -
1622930132.700918-CDS-H-elongata_contig20127:3328..34751622930132.700918-CDS-H-elongata_contig20127:3328..3475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20127 3329..3475 -
1691679293.2924407-CDS-H-elongata_contig20127:3328..34751691679293.2924407-CDS-H-elongata_contig20127:3328..3475Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20127 3329..3475 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.7140343-UTR-H-elongata_contig20127:3475..34931622930132.7140343-UTR-H-elongata_contig20127:3475..3493Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20127 3476..3493 -
1691679293.3004503-UTR-H-elongata_contig20127:3475..34931691679293.3004503-UTR-H-elongata_contig20127:3475..3493Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig20127 3476..3493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20127.5674.1

>prot_H-elongata_contig20127.5674.1 ID=prot_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
MMEEVERAPLPILHHNVDIWTDKGSGRKFLGLHVFYVTEKFEMKDALLSV
KRYSPAQGALGDAKASEVLLEIMKSILHEFGLKPSNLASGTTDSGSDVNA
VSVNGLWIFYGVPWTWCFCHLMVKAAEQAFGIHLDPAKSKNPKARELLRN
VIKVVENLNKSSNLRAKFEDLQVELLGEIFKIVKHAPQRWLSFTRTLERV
IRLWHVLRKIYSDEGKNFPLKEGDNNNGILQLYSLLQPLSLI
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mRNA from alignment at H-elongata_contig20127:2381..3493-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20127.5674.1 ID=mRNA_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1113bp|location=Sequence derived from alignment at H-elongata_contig20127:2381..3493- (Himanthalia elongata Himel1 dioecious)
CAGGTGGTCGTGGGCAACATGATGGAGGAAGTGGAGCGAGCGCCGCTTCC CATTTTGCACCACAATGTCGACATTTGGACTGACAAGGGATCGGGGCGCA AGTTCCTGGGTCTTCACGTTTTCTACGTGACCGAGAAGTTTGAGATGAAG GACGCCCTGCTCTCTGTGAGTGAACCGTTGTGTGGGCTTGTGGAAAAAGG TTACGTGTCGAGATAACGGATACGGCAAGCAACACGAAATGAAATATATA TATTGAAATAAAAATATTCATATAAGTATATCTATGAACCCCTTTTTTCG GAGGTTGAAATGGAGGGAGTGGGAAGGATAATTTTGTTGGGTGAAAATGA ACGTTGAGTTGTTATTGTTTTCTGCATTTGCGATTGCATGTACTCCATGT CGAGTTTGTCCATGTTTTTTTGGGAGTTTAGCCTCTTGCTTGCGTCAACT TAATGCCGCATACCTATGCATACATTTGACAGAAAGCTGTCGAAACTTTT GTTTTCCTGTCTGCCCTCATTAACATTACCCCAGGTCAAGCGCTACTCGC CCGCCCAGGGCGCTCTGGGAGACGCGAAGGCCTCCGAAGTTCTTCTCGAG ATTATGAAGTCCATCCTTCACGAGTTCGGCCTGAAGCCATCGAACCTCGC CTCGGGTACTACGGACAGCGGATCGGACGTCAACGCCGTGAGCGTCAACG GCCTGTGGATTTTCTACGGGGTACCGTGGACTTGGTGTTTCTGCCACCTC ATGGTTAAGGCCGCCGAGCAAGCCTTTGGCATTCACCTCGACCCAGCCAA GTCGAAGAACCCAAAAGCACGCGAGCTTCTCAGGAACGTCATCAAGGTCG TCGAGAACCTCAACAAGTCTTCCAACTTGAGAGCGAAGTTCGAGGACCTT CAGGTGGAGCTGTTGGGCGAGATCTTCAAGATCGTCAAGCACGCGCCCCA ACGCTGGCTCAGCTTCACTCGCACACTGGAGCGGGTCATCCGCTTGTGGC ACGTCCTGAGAAAGATTTACAGCGACGAGGGTAAGAACTTTCCGCTCAAA GAGGGCGACAACAACAACGGCATCCTTCAGCTCTACTCGCTGCTGCAGCC GCTTTCCTTGATC
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Coding sequence (CDS) from alignment at H-elongata_contig20127:2381..3493-

>mRNA_H-elongata_contig20127.5674.1 ID=mRNA_H-elongata_contig20127.5674.1|Name=mRNA_H-elongata_contig20127.5674.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig20127:2381..3493- (Himanthalia elongata Himel1 dioecious)
ATGATGGAGGAAGTGGAGCGAGCGCCGCTTCCCATTTTGCACCACAATGT
CGACATTTGGACTGACAAGGGATCGGGGCGCAAGTTCCTGGGTCTTCACG
TTTTCTACGTGACCGAGAAGTTTGAGATGAAGGACGCCCTGCTCTCTATG
ATGGAGGAAGTGGAGCGAGCGCCGCTTCCCATTTTGCACCACAATGTCGA
CATTTGGACTGACAAGGGATCGGGGCGCAAGTTCCTGGGTCTTCACGTTT
TCTACGTGACCGAGAAGTTTGAGATGAAGGACGCCCTGCTCTCTGTCAAG
CGCTACTCGCCCGCCCAGGGCGCTCTGGGAGACGCGAAGGCCTCCGAAGT
TCTTCTCGAGATTATGAAGTCCATCCTTCACGAGTTCGGCCTGAAGCCAT
CGAACCTCGCCTCGGGTACTACGGACAGCGGATCGGACGTCAACGCCGTG
AGCGTCAACGGCCTGTGGATTTTCTACGGGGTACCGTGGACTTGGTGTTT
CTGCCACCTCATGGTTAAGGCCGCCGAGCAAGCCTTTGGCATTCACCTCG
ACCCAGCCAAGTCGAAGAACCCAAAAGCACGCGAGCTTCTCAGGAACGTC
ATCAAGGTCGTCGAGAACCTCAACAAGTCTTCCAACTTGAGAGCGAAGTT
CGAGGACCTTCAGGTGGAGCTGTTGGGCGAGATCTTCAAGATCGTCAAGC
ACGCGCCCCAACGCTGGCTCAGCTTCACTCGCACACTGGAGCGGGTCATC
CGCTTGTGGCACGTCCTGAGAAAGATTTACAGCGACGAGGGTAAGAACTT
TCCGCTCAAAGAGGGCGACAACAACAACGGCATCCTTCAGCTCTACTCGC
TGCTGCAGCCGCTTTCCTTGATCGTCAAGCGCTACTCGCCCGCCCAGGGC
GCTCTGGGAGACGCGAAGGCCTCCGAAGTTCTTCTCGAGATTATGAAGTC
CATCCTTCACGAGTTCGGCCTGAAGCCATCGAACCTCGCCTCGGGTACTA
CGGACAGCGGATCGGACGTCAACGCCGTGAGCGTCAACGGCCTGTGGATT
TTCTACGGGGTACCGTGGACTTGGTGTTTCTGCCACCTCATGGTTAAGGC
CGCCGAGCAAGCCTTTGGCATTCACCTCGACCCAGCCAAGTCGAAGAACC
CAAAAGCACGCGAGCTTCTCAGGAACGTCATCAAGGTCGTCGAGAACCTC
AACAAGTCTTCCAACTTGAGAGCGAAGTTCGAGGACCTTCAGGTGGAGCT
GTTGGGCGAGATCTTCAAGATCGTCAAGCACGCGCCCCAACGCTGGCTCA
GCTTCACTCGCACACTGGAGCGGGTCATCCGCTTGTGGCACGTCCTGAGA
AAGATTTACAGCGACGAGGGTAAGAACTTTCCGCTCAAAGAGGGCGACAA
CAACAACGGCATCCTTCAGCTCTACTCGCTGCTGCAGCCGCTTTCCTTGA
TC
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