mRNA_H-elongata_contig201265.5673.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.340e-45 Identity = 92/245 (37.55%), Postives = 137/245 (55.92%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
+K RLVA+GF Q+ + Y SSSP P+ ASI+++L++ G DV AY A +EE++++ P D +I ++A+YGL +G W L G ++ +ADPCVFR+++ VV++ IV+YVDD+LVA + + EE Q M ERF + TS IP+ G K + EE + P RE +G++MW +T +RPD+SFA +A+ P +W A QK L YL
Sbjct: 101 FKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-----CQCMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYL 333
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438FW15_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FW15_VITVI) HSP 1 Score: 169 bits (427), Expect = 5.430e-45 Identity = 92/252 (36.51%), Postives = 144/252 (57.14%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E SP SIR++L+MV+ E QLDV A+L + EEEIY++ PE + DS K + LKK++YGL + W K+ + + R+Q D CV+ + L +++++YVDD+L+A+ ++ + ++ Q ++ F M + G + D+ P TD EVE M+ +PY +VG+LM+A TRPD++FA +++F NPG HW A + ++YL
Sbjct: 251 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDASLFTLPSTDEEVEYMKSVPYSSMVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 499
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A5B4I5_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5B4I5_VITVI) HSP 1 Score: 169 bits (429), Expect = 1.820e-44 Identity = 92/252 (36.51%), Postives = 144/252 (57.14%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E SP SIR++L+MV+ E QLDV A+L + EEEIY++ PE + DS K + LKK++YGL + W K+ + + R+Q D CV+ + L +++++YVDD+L+A+ ++ + ++ Q ++ F M + G + D+ P TD EVE M+ +PY +VG+LM+A TRPD++FA +++F NPG HW A + ++YL
Sbjct: 978 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAXLFTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 1226
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438HI52_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HI52_VITVI) HSP 1 Score: 166 bits (420), Expect = 5.400e-44 Identity = 92/260 (35.38%), Postives = 143/260 (55.00%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGK-------------ALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E SP SIR++L+MV+ E QLDV A+L + EEEIY++ PE + DS K + LKK++YGL + W K+ + + R+Q D CV+ + L +++++YVDD+L+A+ ++ + ++ Q ++ F M + G + S P TD EVE M+ +PY +VG+LM+A TRPD++FA +++F NPG HW A + ++YL
Sbjct: 219 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFDLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGWRFGETEMQACSQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 475
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438HLF3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HLF3_VITVI) HSP 1 Score: 167 bits (424), Expect = 8.140e-44 Identity = 92/252 (36.51%), Postives = 142/252 (56.35%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E SP SIR++L+MV+ E QLDV A+L + EEEIY+ PE + DS K + LKK +YGL + W K+ + + R+Q D CV+ + L +++++YVDD+L+A+ ++ + ++ Q ++ F M + G + D+ P TD EVE M+ +PY +VG+LM+A TRPD++FA +++F NPG HW A + ++YL
Sbjct: 764 YKSRLVAKGFSQKEGIDYNEVFSPIVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMRQPEGFVDSEKSDHVCFLKKFLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLFTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 1012
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A2N9HZZ3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HZZ3_FAGSY) HSP 1 Score: 167 bits (422), Expect = 1.490e-43 Identity = 94/258 (36.43%), Postives = 146/258 (56.59%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAY--RDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAG-----------GKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E+ SP + S+R++L++VA E +Q+DV A+L D EEE+Y++ PE + D + LKK++YGL A W K + + G + D C+++++ G + F+V+YVDD+L+A+ D+ H+ Q +++ F M V G G + + P+ D E E+M+ IPY VG+LM+A TRPDI+FA L ++ +PG HWRAA+K ++YL
Sbjct: 860 YKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLAT---NDKGLLHEVKQFLSKNFDMKDMGEASYVTGIKIHRDRFQVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVYTRPDIAFAMGMLGRYQSDPGLDHWRAAKKVMRYL 1113
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A2N9J7I7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7I7_FAGSY) HSP 1 Score: 166 bits (421), Expect = 1.920e-43 Identity = 94/261 (36.02%), Postives = 147/261 (56.32%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAY--RDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAG--------------GKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+GF Q +GI Y E+ SP + S+R++L++VA E +Q+DV A+L D EEE+Y++ PE + D + + LKK++YGL A W K + + G + D C+++++ G + F+V+YVDD+L+A+ D+ H+ Q +++ F M V G G + + P+ D E E+M+ IPY VG+LM+A TRPDI+FA L ++ +PG HWRAA+K ++YL
Sbjct: 557 YKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLAT---NDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYL 813
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6A2ZAQ1_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZAQ1_HIBSY) HSP 1 Score: 166 bits (421), Expect = 2.040e-43 Identity = 91/255 (35.69%), Postives = 140/255 (54.90%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQ-------YIQTMAERFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
+K RLVA+GF Q KG+ Y+E SP SIR VL++VA+ Q+DV A+L D EE+IY+ PE + + + LKK++YGL + W K+ + G R + D CV+ + L +F+++YVDD+L+A+ D ++ + Y++ M ERF M+ + + +A LS P+TD E E+M ++PY VG LM+A TRPD++ A Q+ K+ PG HW A + +YL
Sbjct: 723 FKARLVAKGFSQQKGVDYDEIFSPVVRHTSIRAVLALVASWDLHLEQMDVKTAFLHGDLEEQIYMRQPEGFTQPGNEHLVCRLKKSLYGLKQSPRQWYKRFDSYMIKIGYNRCEYDCCVYVKSLDDGSFIFLLLYVDDMLIAAKNMDDGQRLKETAAISTGYVEKMLERFAMSSAKPVSTPLANHFKLSSEQCPKTDKEAEDMAKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWEAVKWIFRYL 977
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6A2XIL5_HIBSY (Cinnamyl alcohol dehydrogenase 6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XIL5_HIBSY) HSP 1 Score: 165 bits (417), Expect = 7.710e-43 Identity = 91/255 (35.69%), Postives = 139/255 (54.51%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQ-------YIQTMAERFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
+K RLVA+GF Q KG+ Y+E SP SIR VL++VA+ Q+DV A+L D EE+IY+ PE + + + LKK++YGL + W K+ + G R + D CV+ + L +F+++YVDD+L+A+ D ++ + Y++ M ERF M+ + + +A LS P+TD E E M ++PY VG LM+A TRPD++ A Q+ K+ PG HW A + +YL
Sbjct: 820 FKARLVAKGFSQQKGVDYDEIFSPVVRHTSIRAVLALVASWDLHLEQMDVKTAFLHGDLEEQIYMRQPEGFTQPGNEHLVCRLKKSLYGLKQSPRQWYKRFDSYMIKIGYNRCEYDCCVYVKSLDDGSFIFLLLYVDDMLIAAKNMDDGQRLKETAVISTGYVEKMLERFAMSSAKPVSTPLANHFKLSSEQCPKTDKEAENMAKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWDAVKWIFRYL 1074
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A8J6CQB8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CQB8_9ROSI) HSP 1 Score: 159 bits (401), Expect = 9.710e-41 Identity = 93/268 (34.70%), Postives = 150/268 (55.97%), Query Frame = 1
Query: 1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATK----------------RDEEQAHQYIQTMAE----RFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
YK RLVA+G+ QV G+ + + SP +SIR +L +VA E QLDV A+L + EE+IY++ PE + S K+ + LLKK++YGL + W K+ + + +RS D CV+ + + V++++YVDD+L+A+ K +D +Q +Y++ E RF M + + +A LS + SPQ+D E++ M +PY VG+LM+A +RPD+S+A ++++ NPG HW+A Q L+YL
Sbjct: 735 YKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNDGSFVYLLLYVDDMLIAAKDKGEIRKVKAQLSEEFEMKDWDQQRRYLKGYIEKLLCRFNMRSAKPVSTPLAAHFRLSSALSPQSDDEIKYMSHVPYSSAVGSLMYAMVCSRPDLSYAVSAVSRYMANPGKEHWKAVQWILRYL 1002 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig201265.5673.1 >prot_H-elongata_contig201265.5673.1 ID=prot_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp MAERFVMTKTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMback to top mRNA from alignment at H-elongata_contig201265:5..850- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig201265.5673.1 ID=mRNA_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig201265:5..850- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig201265:5..850- >mRNA_H-elongata_contig201265.5673.1 ID=mRNA_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig201265:5..850- (Himanthalia elongata Himel1 dioecious)back to top |