mRNA_H-elongata_contig201265.5673.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig201265.5673.1
Unique NamemRNA_H-elongata_contig201265.5673.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6H5KFN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN5_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 2.340e-45
Identity = 92/245 (37.55%), Postives = 137/245 (55.92%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            +K RLVA+GF Q+  + Y  SSSP P+ ASI+++L++    G      DV  AY  A  +EE++++ P    D   +I   ++A+YGL  +G  W       L   G ++ +ADPCVFR+++  VV++ IV+YVDD+LVA + +  EE      Q M ERF +  TS IP+  G     K +        EE  + P RE +G++MW +T +RPD+SFA   +A+    P   +W A QK L YL
Sbjct:  101 FKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-----CQCMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRNWDAIQKILGYL 333          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438FW15_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FW15_VITVI)

HSP 1 Score: 169 bits (427), Expect = 5.430e-45
Identity = 92/252 (36.51%), Postives = 144/252 (57.14%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E  SP     SIR++L+MV+    E  QLDV  A+L  + EEEIY++ PE + DS K   +  LKK++YGL  +   W K+    + +    R+Q D CV+ + L     +++++YVDD+L+A+   ++  + ++  Q ++  F M        + G +     D+     P TD EVE M+ +PY  +VG+LM+A   TRPD++FA   +++F  NPG  HW A +  ++YL
Sbjct:  251 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDASLFTLPSTDEEVEYMKSVPYSSMVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 499          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A5B4I5_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5B4I5_VITVI)

HSP 1 Score: 169 bits (429), Expect = 1.820e-44
Identity = 92/252 (36.51%), Postives = 144/252 (57.14%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E  SP     SIR++L+MV+    E  QLDV  A+L  + EEEIY++ PE + DS K   +  LKK++YGL  +   W K+    + +    R+Q D CV+ + L     +++++YVDD+L+A+   ++  + ++  Q ++  F M        + G +     D+     P TD EVE M+ +PY  +VG+LM+A   TRPD++FA   +++F  NPG  HW A +  ++YL
Sbjct:  978 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAXLFTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 1226          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438HI52_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HI52_VITVI)

HSP 1 Score: 166 bits (420), Expect = 5.400e-44
Identity = 92/260 (35.38%), Postives = 143/260 (55.00%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGK-------------ALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E  SP     SIR++L+MV+    E  QLDV  A+L  + EEEIY++ PE + DS K   +  LKK++YGL  +   W K+    + +    R+Q D CV+ + L     +++++YVDD+L+A+   ++  + ++  Q ++  F M        + G +                 S  P TD EVE M+ +PY  +VG+LM+A   TRPD++FA   +++F  NPG  HW A +  ++YL
Sbjct:  219 YKSRLVAKGFSQKEGIDYNEVFSPVVKHKSIRVLLAMVSVFDLELDQLDVKTAFLHGNLEEEIYMKQPEGFVDSEKSDHVCFLKKSLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGWRFGETEMQACSQHFKFDHSTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 475          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A438HLF3_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HLF3_VITVI)

HSP 1 Score: 167 bits (424), Expect = 8.140e-44
Identity = 92/252 (36.51%), Postives = 142/252 (56.35%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAGGKALSKSDS-----PQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E  SP     SIR++L+MV+    E  QLDV  A+L  + EEEIY+  PE + DS K   +  LKK +YGL  +   W K+    + +    R+Q D CV+ + L     +++++YVDD+L+A+   ++  + ++  Q ++  F M        + G +     D+     P TD EVE M+ +PY  +VG+LM+A   TRPD++FA   +++F  NPG  HW A +  ++YL
Sbjct:  764 YKSRLVAKGFSQKEGIDYNEVFSPIVKHKSIRVLLAMVSVFNLELDQLDVKTAFLHGNLEEEIYMRQPEGFVDSEKSDHVCFLKKFLYGLKQSPRQWYKRFDAFMVSHEFMRNQYDSCVYFKTLPDGSFIYLLLYVDDMLIAA---KNRAEINKLKQLLSSEFEMKDLGAAKKILGMEIWRDRDAGLFTLPSTDEEVEYMKSVPYSSVVGSLMYAMVCTRPDLAFAVSVVSRFMSNPGKAHWEAVKWIMRYL 1012          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A2N9HZZ3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HZZ3_FAGSY)

HSP 1 Score: 167 bits (422), Expect = 1.490e-43
Identity = 94/258 (36.43%), Postives = 146/258 (56.59%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAY--RDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAG-----------GKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E+ SP   + S+R++L++VA    E +Q+DV  A+L  D EEE+Y++ PE +   D    +  LKK++YGL  A   W  K    + + G   +  D C+++++  G  + F+V+YVDD+L+A+    D+   H+  Q +++ F M        V G           G   + +  P+ D E E+M+ IPY   VG+LM+A   TRPDI+FA   L ++  +PG  HWRAA+K ++YL
Sbjct:  860 YKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFPSSDGEHLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLAT---NDKGLLHEVKQFLSKNFDMKDMGEASYVTGIKIHRDRFQVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVYTRPDIAFAMGMLGRYQSDPGLDHWRAAKKVMRYL 1113          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A2N9J7I7_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9J7I7_FAGSY)

HSP 1 Score: 166 bits (421), Expect = 1.920e-43
Identity = 94/261 (36.02%), Postives = 147/261 (56.32%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAY--RDSRKQIGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQYIQTMAERFVMTKTSIIPSVAG--------------GKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+GF Q +GI Y E+ SP   + S+R++L++VA    E +Q+DV  A+L  D EEE+Y++ PE +   D  + +  LKK++YGL  A   W  K    + + G   +  D C+++++  G  + F+V+YVDD+L+A+    D+   H+  Q +++ F M        V G              G   + +  P+ D E E+M+ IPY   VG+LM+A   TRPDI+FA   L ++  +PG  HWRAA+K ++YL
Sbjct:  557 YKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLAT---NDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYL 813          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6A2ZAQ1_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZAQ1_HIBSY)

HSP 1 Score: 166 bits (421), Expect = 2.040e-43
Identity = 91/255 (35.69%), Postives = 140/255 (54.90%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQ-------YIQTMAERFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            +K RLVA+GF Q KG+ Y+E  SP     SIR VL++VA+      Q+DV  A+L  D EE+IY+  PE +     +  +  LKK++YGL  +   W K+    +   G  R + D CV+ + L     +F+++YVDD+L+A+    D ++  +       Y++ M ERF M+    + + +A    LS    P+TD E E+M ++PY   VG LM+A   TRPD++ A  Q+ K+   PG  HW A +   +YL
Sbjct:  723 FKARLVAKGFSQQKGVDYDEIFSPVVRHTSIRAVLALVASWDLHLEQMDVKTAFLHGDLEEQIYMRQPEGFTQPGNEHLVCRLKKSLYGLKQSPRQWYKRFDSYMIKIGYNRCEYDCCVYVKSLDDGSFIFLLLYVDDMLIAAKNMDDGQRLKETAAISTGYVEKMLERFAMSSAKPVSTPLANHFKLSSEQCPKTDKEAEDMAKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWEAVKWIFRYL 977          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A6A2XIL5_HIBSY (Cinnamyl alcohol dehydrogenase 6 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XIL5_HIBSY)

HSP 1 Score: 165 bits (417), Expect = 7.710e-43
Identity = 91/255 (35.69%), Postives = 139/255 (54.51%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATKRDEEQAHQ-------YIQTMAERFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            +K RLVA+GF Q KG+ Y+E  SP     SIR VL++VA+      Q+DV  A+L  D EE+IY+  PE +     +  +  LKK++YGL  +   W K+    +   G  R + D CV+ + L     +F+++YVDD+L+A+    D ++  +       Y++ M ERF M+    + + +A    LS    P+TD E E M ++PY   VG LM+A   TRPD++ A  Q+ K+   PG  HW A +   +YL
Sbjct:  820 FKARLVAKGFSQQKGVDYDEIFSPVVRHTSIRAVLALVASWDLHLEQMDVKTAFLHGDLEEQIYMRQPEGFTQPGNEHLVCRLKKSLYGLKQSPRQWYKRFDSYMIKIGYNRCEYDCCVYVKSLDDGSFIFLLLYVDDMLIAAKNMDDGQRLKETAVISTGYVEKMLERFAMSSAKPVSTPLANHFKLSSEQCPKTDKEAENMAKVPYSNAVGCLMYAMVCTRPDLAHAVSQVCKYMSKPGKQHWDAVKWIFRYL 1074          
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Match: A0A8J6CQB8_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CQB8_9ROSI)

HSP 1 Score: 159 bits (401), Expect = 9.710e-41
Identity = 93/268 (34.70%), Postives = 150/268 (55.97%), Query Frame = 1
Query:    1 YKCRLVAQGFRQVKGIHYEESSSPTPAQASIRMVLSMVAALGWEARQLDVDMAYLEADAEEEIYVEFPEAYRDSRKQ--IGLLKKAMYGLVHAGLLW*KKLGIELEAKGLQRSQADPCVFRRILHGVVLVFIVVYVDDLLVASATK----------------RDEEQAHQYIQTMAE----RFVMTKTSIIPS-VAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALMWAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL 735
            YK RLVA+G+ QV G+ + +  SP    +SIR +L +VA    E  QLDV  A+L  + EE+IY++ PE +  S K+  + LLKK++YGL  +   W K+    + +   +RS  D CV+ +  +    V++++YVDD+L+A+  K                +D +Q  +Y++   E    RF M     + + +A    LS + SPQ+D E++ M  +PY   VG+LM+A   +RPD+S+A   ++++  NPG  HW+A Q  L+YL
Sbjct:  735 YKARLVAKGYSQVPGVDFTDVFSPVVKHSSIRALLGIVAMHDLELEQLDVKTAFLHGELEEDIYMQQPEGFTVSEKEDYVCLLKKSLYGLKQSPRQWYKRFDSFMTSHDFKRSSFDSCVYFKKNNDGSFVYLLLYVDDMLIAAKDKGEIRKVKAQLSEEFEMKDWDQQRRYLKGYIEKLLCRFNMRSAKPVSTPLAAHFRLSSALSPQSDDEIKYMSHVPYSSAVGSLMYAMVCSRPDLSYAVSAVSRYMANPGKEHWKAVQWILRYL 1002          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig201265.5673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFN5_9PHAE2.340e-4537.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A438FW15_VITVI5.430e-4536.51Retrovirus-related Pol polyprotein from transposon... [more]
A5B4I5_VITVI1.820e-4436.51Uncharacterized protein n=2 Tax=Vitis vinifera Tax... [more]
A0A438HI52_VITVI5.400e-4435.38Retrovirus-related Pol polyprotein from transposon... [more]
A0A438HLF3_VITVI8.140e-4436.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2N9HZZ3_FAGSY1.490e-4336.43Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9J7I7_FAGSY1.920e-4336.02Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2ZAQ1_HIBSY2.040e-4335.69Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A2XIL5_HIBSY7.710e-4335.69Cinnamyl alcohol dehydrogenase 6 n=1 Tax=Hibiscus ... [more]
A0A8J6CQB8_9ROSI9.710e-4134.70Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig201265contigH-elongata_contig201265:5..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.6
Seed ortholog evalue5.2e-14
Seed eggNOG ortholog164328.Phyra85923
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size735
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig201265.5673.1prot_H-elongata_contig201265.5673.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig201265 5..271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.6118746-CDS-H-elongata_contig201265:4..2711622930132.6118746-CDS-H-elongata_contig201265:4..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201265 5..271 -
1691679293.2418876-CDS-H-elongata_contig201265:4..2711691679293.2418876-CDS-H-elongata_contig201265:4..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig201265 5..271 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930132.624601-UTR-H-elongata_contig201265:271..2891622930132.624601-UTR-H-elongata_contig201265:271..289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201265 272..289 -
1691679293.2675235-UTR-H-elongata_contig201265:271..2891691679293.2675235-UTR-H-elongata_contig201265:271..289Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201265 272..289 -
1622930132.6388476-UTR-H-elongata_contig201265:400..8501622930132.6388476-UTR-H-elongata_contig201265:400..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201265 401..850 -
1691679293.2758083-UTR-H-elongata_contig201265:400..8501691679293.2758083-UTR-H-elongata_contig201265:400..850Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig201265 401..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig201265.5673.1

>prot_H-elongata_contig201265.5673.1 ID=prot_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
MAERFVMTKTSIIPSVAGGKALSKSDSPQTDAEVEEMRQIPYREIVGALM
WAATMTRPDISFAAHQLAKFNDNPGPTHWRAAQKALQYL
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mRNA from alignment at H-elongata_contig201265:5..850-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig201265.5673.1 ID=mRNA_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig201265:5..850- (Himanthalia elongata Himel1 dioecious)
TATAAATGTCGTCTCGTGGCGCAGGGTTTTAGGCAGGTCAAAGGTATACA CTACGAGGAATCCTCCTCTCCAACTCCTGCGCAGGCCAGCATTAGGATGG TACTCAGCATGGTCGCGGCTCTTGGCTGGGAAGCGCGGCAGCTGGACGTC GACATGGCCTACCTGGAGGCCGATGCGGAGGAGGAGATCTACGTTGAGTT CCCGGAGGCATACCGTGACTCCAGGAAGCAAATCGGCCTACTAAAGAAGG CAATGTACGGACTCGTTCACGCCGGGCTGCTGTGGTAAAAAAAGTTGGGG ATCGAGCTCGAGGCGAAGGGTTTGCAGAGATCTCAAGCTGACCCATGCGT GTTCCGGCGGATTCTCCACGGGGTAGTGTTAGTTTTCATTGTGGTCTACG TCGACGACCTGCTGGTTGCTAGTGCGACGAAACGTGACGAGGAGCAAGCG GTGAGGGACCTGTGCTCCTGCTTCCCCATTAAGGATCTGGGGGGGGCTTC GTATTATCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACTGA CGTTCGACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGTCATG ACGAAGACCAGCATCATCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAA ATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTC CCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGG CCCGACATTTCATTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCC GGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTA
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Coding sequence (CDS) from alignment at H-elongata_contig201265:5..850-

>mRNA_H-elongata_contig201265.5673.1 ID=mRNA_H-elongata_contig201265.5673.1|Name=mRNA_H-elongata_contig201265.5673.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig201265:5..850- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAACGTTTTGTCATGACGAAGACCAGCATCATCCCGTCCGTGGC
AGGAGGAAAAGCCCTTTCGAAATCAGACAGCCCGCAAACGGACGCAGAGG
TTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGGCCCTAATG
TGGGCAGCGACGATGACCAGGCCCGACATTTCATTCGCTGCGCACCAACT
GGCGAAATTCAACGACAACCCGGGACCGACACACTGGAGGGCAGCCCAGA
AAGCGCTGCAATATTTAATGGCGGAACGTTTTGTCATGACGAAGACCAGC
ATCATCCCGTCCGTGGCAGGAGGAAAAGCCCTTTCGAAATCAGACAGCCC
GCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAGAAA
TCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACATTTCA
TTCGCTGCGCACCAACTGGCGAAATTCAACGACAACCCGGGACCGACACA
CTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTA
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