mRNA_H-elongata_contig20101.5665.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig20101.5665.1
Unique NamemRNA_H-elongata_contig20101.5665.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A6H5KJW5_9PHAE (Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJW5_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 6.230e-52
Identity = 77/95 (81.05%), Postives = 85/95 (89.47%), Query Frame = 1 
Query:   10 GDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            GD++NWLDEA+LVNP+IVA GKGK+  EEGCLSFPGM G VER NWVKVEA NAKGKK+KKKYTDWTARIFQHEYDHLDGTVYID L+P  R+KV
Sbjct:  164 GDAKNWLDEAILVNPKIVASGKGKITAEEGCLSFPGMEGKVERRNWVKVEAVNAKGKKVKKKYTDWTARIFQHEYDHLDGTVYIDHLSPSEREKV 258
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A1Z5KQL3_FISSO (Peptide deformylase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQL3_FISSO)

HSP 1 Score: 149 bits (377), Expect = 1.520e-43
Identity = 65/98 (66.33%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            +Q GD + WLDE ++VNP IV   + + ++ EGCLSFPGM G VER+ W+KVEA N KGKK K+K+TDW ARIFQHEYDHLDGTVYIDRL  EGR KV
Sbjct:  105 NQSGDPKKWLDEVIMVNPTIVEFSEARNVETEGCLSFPGMDGPVERSKWIKVEAMNMKGKKFKRKFTDWEARIFQHEYDHLDGTVYIDRLDEEGRSKV 202
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: B8BSA6_THAPS (Peptide deformylase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BSA6_THAPS)

HSP 1 Score: 146 bits (368), Expect = 1.130e-42
Identity = 62/98 (63.27%), Postives = 79/98 (80.61%), Query Frame = 1 
Query:    1 SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            ++ GDS+ W+ E ++VNP+IV       I++EGCLSFP M G+V+R+ W+KVEAQN KGKKIKKK+T W ARIFQHEYDHLDG VY+DRL+ EGRK+V
Sbjct:   66 NESGDSKRWMQEVIMVNPKIVEFSSATDIEQEGCLSFPEMGGDVQRSKWIKVEAQNLKGKKIKKKFTGWEARIFQHEYDHLDGVVYVDRLSEEGRKEV 163
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S3V6U4_9STRA (Peptide deformylase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6U4_9STRA)

HSP 1 Score: 144 bits (362), Expect = 5.180e-41
Identity = 62/98 (63.27%), Postives = 78/98 (79.59%), Query Frame = 1 
Query:    1 SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            ++ GD + WL E V+VNP+IV   +GK ++ EGCLSFPGM G+V+R+ W+KVEAQN KGKK+KKK+  W ARIFQHEYDHLDGT+Y DRLT EG+  V
Sbjct:  127 NETGDKKKWLKETVMVNPKIVDFSEGKDVESEGCLSFPGMNGDVQRSKWIKVEAQNLKGKKMKKKFKGWEARIFQHEYDHLDGTLYPDRLTDEGKDLV 224
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S1YIG9_9STRA (Peptide deformylase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YIG9_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.470e-41
Identity = 65/98 (66.33%), Postives = 75/98 (76.53%), Query Frame = 1 
Query:    1 SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            ++ GD   WLDE VLVNPRIV  G G  ++ EGCLSFPGM G V+RN W++VEA N +GKKIKKK+ DW ARIFQHEYDHLDGTVYID L  E R +V
Sbjct:  158 NEHGDKTKWLDEMVLVNPRIVKKGGGTDVETEGCLSFPGMNGPVQRNKWIQVEALNKRGKKIKKKFFDWEARIFQHEYDHLDGTVYIDHLAEEARAEV 255
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S2PCD3_9STRA (Peptide deformylase n=2 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PCD3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.290e-40
Identity = 60/98 (61.22%), Postives = 77/98 (78.57%), Query Frame = 1 
Query:    1 SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            ++ GD + W+ E ++VNP IV   +   ++EEGCLSFP M G+V+R+ W+KVEAQN KGKKIKKK+  W ARIFQHEYDHLDG VYIDRLT +GRK++
Sbjct:  162 NEHGDPKKWMSEVIMVNPTIVEFSEASDVEEEGCLSFPDMGGDVDRSKWIKVEAQNLKGKKIKKKFRGWEARIFQHEYDHLDGKVYIDRLTEDGRKEI 259
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: K0T4T4_THAOC (Peptide deformylase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T4T4_THAOC)

HSP 1 Score: 139 bits (349), Expect = 1.930e-39
Identity = 60/95 (63.16%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:   10 GDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            GD + W+ E + VNP+IV     K I+ EGCLSFP M G+V+R+ W+K+EAQN KGKKIKKK+  W AR+FQHEYDHL+ TVYIDRLT EGRK+V
Sbjct:   97 GDPKKWMKENIFVNPKIVEYSDAKDIETEGCLSFPDMNGDVQRSKWIKIEAQNLKGKKIKKKFKGWEARVFQHEYDHLERTVYIDRLTDEGRKEV 191
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S1GJC1_CYCTE (Peptide deformylase n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GJC1_CYCTE)

HSP 1 Score: 139 bits (351), Expect = 2.560e-39
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1 
Query:   10 GDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            GDS+ WLDE VLVNPRIV +  G  ++ EGCLSFP M G+V+R+ W+KVEA   KG+K+KKK+  W ARIFQHEYDHLDG VYIDRL+ +GR  V
Sbjct:  133 GDSKKWLDEVVLVNPRIVQLSDGTDVEIEGCLSFPDMNGDVQRSKWIKVEALTPKGRKVKKKFNGWEARIFQHEYDHLDGVVYIDRLSEKGRSDV 227
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BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S1U4W5_9STRA (Peptide deformylase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W5_9STRA)

HSP 1 Score: 137 bits (345), Expect = 7.540e-39
Identity = 63/95 (66.32%), Postives = 72/95 (75.79%), Query Frame = 1 
Query:   10 GDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            GD+R WL E VLVNPRIV   +    + EGCLSFP M G VERN W+KVEAQN KGKK+KKK+T W ARIFQHEYDHLDG VY DRL  + +K+V
Sbjct:   96 GDARKWLAEVVLVNPRIVERSEAVDEESEGCLSFPDMDGKVERNKWIKVEAQNLKGKKLKKKFTGWEARIFQHEYDHLDGVVYPDRLDAKEKKRV 190
[Close]
BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Match: A0A7S1BIF6_9STRA (Peptide deformylase n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BIF6_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.530e-38
Identity = 59/95 (62.11%), Postives = 71/95 (74.74%), Query Frame = 1 
Query:   10 GDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWVKVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV 294
            GD   WLDE  +VNP+I    +GK ++ EGCLSFPGM G V+R+ W+KVEA N KGKKIKKK+  W ARIFQHEYDHLDG VY DRL  +G+ +V
Sbjct:  135 GDKTKWLDEVTMVNPKITTFSEGKDVETEGCLSFPGMDGKVQRSKWIKVEAVNLKGKKIKKKFVGWEARIFQHEYDHLDGKVYTDRLDDDGKSEV 229
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20101.5665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJW5_9PHAE6.230e-5281.05Peptide deformylase n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A1Z5KQL3_FISSO1.520e-4366.33Peptide deformylase n=2 Tax=Fistulifera solaris Ta... [more]
B8BSA6_THAPS1.130e-4263.27Peptide deformylase (Fragment) n=1 Tax=Thalassiosi... [more]
A0A7S3V6U4_9STRA5.180e-4163.27Peptide deformylase n=1 Tax=Chaetoceros debilis Ta... [more]
A0A7S1YIG9_9STRA8.470e-4166.33Peptide deformylase n=1 Tax=Grammatophora oceanica... [more]
A0A7S2PCD3_9STRA7.290e-4061.22Peptide deformylase n=2 Tax=Skeletonema marinoi Ta... [more]
K0T4T4_THAOC1.930e-3963.16Peptide deformylase n=1 Tax=Thalassiosira oceanica... [more]
A0A7S1GJC1_CYCTE2.560e-3964.21Peptide deformylase n=1 Tax=Cyclophora tenuis TaxI... [more]
A0A7S1U4W5_9STRA7.540e-3966.32Peptide deformylase n=1 Tax=Phaeomonas parva TaxID... [more]
A0A7S1BIF6_9STRA1.530e-3862.11Peptide deformylase n=2 Tax=Corethron hystrix TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig20101contigH-elongata_contig20101:1836..3665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.4
Seed ortholog evalue2.7e-32
Seed eggNOG ortholog35128.Thaps30977
Preferred namePDF1B
KEGG koko:K01462
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016787,GO:0016810,GO:0016811,GO:0018193,GO:0018206,GO:0019538,GO:0031365,GO:0036211,GO:0042586,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043686,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564
EggNOG free text desc.Removes the formyl group from the N-terminal Met of newly synthesized proteins
EggNOG OGs2XEWA@2836,COG0242@1,KOG3137@2759
EC3.5.1.88
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionchloroplast peptide deformylase
Ec32 orthologEc-24_001990.1
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig20101.5665.1prot_H-elongata_contig20101.5665.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig20101 1836..3665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930131.5700014-CDS-H-elongata_contig20101:1835..19641622930131.5700014-CDS-H-elongata_contig20101:1835..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 1836..1964 +
1691679292.8770952-CDS-H-elongata_contig20101:1835..19641691679292.8770952-CDS-H-elongata_contig20101:1835..1964Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 1836..1964 +
1622930131.582696-CDS-H-elongata_contig20101:2795..28911622930131.582696-CDS-H-elongata_contig20101:2795..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 2796..2891 +
1691679292.8913596-CDS-H-elongata_contig20101:2795..28911691679292.8913596-CDS-H-elongata_contig20101:2795..2891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 2796..2891 +
1622930131.5944138-CDS-H-elongata_contig20101:3596..36651622930131.5944138-CDS-H-elongata_contig20101:3596..3665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 3597..3665 +
1691679292.9006648-CDS-H-elongata_contig20101:3596..36651691679292.9006648-CDS-H-elongata_contig20101:3596..3665Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig20101 3597..3665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig20101.5665.1

>prot_H-elongata_contig20101.5665.1 ID=prot_H-elongata_contig20101.5665.1|Name=mRNA_H-elongata_contig20101.5665.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
SQGGDSRNWLDEAVLVNPRIVAMGKGKVIDEEGCLSFPGMRGNVERNNWV
KVEAQNAKGKKIKKKYTDWTARIFQHEYDHLDGTVYIDRLTPEGRKKV
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mRNA from alignment at H-elongata_contig20101:1836..3665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig20101.5665.1 ID=mRNA_H-elongata_contig20101.5665.1|Name=mRNA_H-elongata_contig20101.5665.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1830bp|location=Sequence derived from alignment at H-elongata_contig20101:1836..3665+ (Himanthalia elongata Himel1 dioecious)
TCCCAGGGGGGGGACTCGCGAAATTGGCTGGATGAGGCTGTGCTCGTTAA
CCCGCGTATCGTTGCCATGGGGAAGGGGAAAGTTATCGACGAGGAGGGGT
GCTTGTCGTTTCCCGGGATGAGGGGTAACGTGAGTGAGACATGTATTCCC
GACCCCCTCCCCACCCTCCCTAGTATTCGTGGTGAATGATCTAACAGCTA
AGGCATGCACAAATAGAGTCCACCACCCCCCTCCCTGTCTCGTGCGGGAC
GTATCCACTGGTATATCAATATAAATTTCGAAGAAGGGCCGTTGAGGTAT
TATAGGTAAACGATGGAGACGATGCGCCGCCGGGTGCTTGCTTTTACTGT
GATTCCGTGACCATTTAAAAAAATATATATTTTATTCTCTCCACTCCGAT
CGTAGCGGCTCTCCTCGAGAAAGAAAGGAGATTCTAATTAAGTTCGCGAT
TTCTGCTGGCGGCATCAAACGGCTGCGACGGGTGTTTATCCCGGCTCGCA
GCTTGAGAACCCGATTGTCCGCACGCGAAGTCGTGGACTGCTGTAACGTA
ACGGCTCCCCTTGCGTGTGGCTACTCTATTATAGTATCAAAACGTTTGAC
GTGTATAGGGGGGGGGGGGGGCACCTCGGAACAAAAAAAAAATGAAAGGA
AGAAACACGAAGGTATTGAGTACGCGGGACCAACACAAACAGAGGGAAGG
CACAAGCCCGGTGTGTTGGGATTTAATTCGATTCGATTCGATTCGATTAG
GTGGGGAACACATGTTTGCTCGTACGAGTGCCGTTGCCTCTCGCTCGTCG
CTTTCCGGTTGATTTGTTTTTGTTTTTGTGTCTTAACTTGTGTAATATTG
AAGTGTCTATGCGTGTCTCTCTTTGTATATCAATGTATTGTATATCAATG
TATTGTATATCAATGTATTGTATATCAATGTATTGTTTTTATTGTCTCTA
TTGCATGAAGGTGGAGAGGAACAACTGGGTGAAGGTGGAAGCGCAGAACG
CCAAGGGGAAGAAGATAAAGAAGAAGTACACCGACTGGACAGCGAGGATA
TTTCAGGTTGAGGTTAAGGTTAACAAACAAGAACGAGGTGGACGGTCTTA
AGTAGCGATATTGCTTTATTTGCTTGCTTATTACTATTACTACTACTACT
ATTACTACTACTGCTACTACTACTATTACTACTAGTATTACTGCTATTAC
TACTACTGCTACTACTACTAATCCTACTAATAATATTACTACTATTACTA
CTACTATTATTACTTTACTATGTGTAGCAGAACGAAATAGTCACTATTAT
TCAGATATAGACTCGAAAGATGAGTGTTATCATGGTGTCATGCCGCGCGA
TAAGCATATGTATCCACACGCGCGGCGGTCGCGTTTATTTTATTTTCGTA
GCCCCTGTCCCCTCGCGACGATATCCCTTCCCTCGGTTTTCACGACTAGG
AGCGGGGTGGCGAGTTGTAGTGCAAAGGCGAGCCACGCGCCCGCGTGCGT
GCGTGCGTGCGATGGACGGAGACGCCGCTCGCTCCTTCCATAAAAATCTC
GACTTTTATTTTTATTTTTACGGAACTTGATTTCAAGTTTTATATTAAAC
TTAGTGTGTAAAAAAAAACAGATCGAGTTCCATAGGAGTTAACACCTCTT
GGGATGTCTTTTCCGCTTGCGGATCTCTGCCTTCCCACCCTCTCTCTTTG
TCTCTCGTGCGCGCTGTTAATACCAATTAATGCAAATGTATACTTTTCTA
TATACGAATAGCACGAGTACGATCACCTGGATGGCACGGTGTACATCGAT
CGTTTGACTCCTGAGGGGAGAAAGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig20101:1836..3665+

>mRNA_H-elongata_contig20101.5665.1 ID=mRNA_H-elongata_contig20101.5665.1|Name=mRNA_H-elongata_contig20101.5665.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig20101:1836..3665+ (Himanthalia elongata Himel1 dioecious)
TCCCAGGGGGGGGACTCGCGAAATTGGCTGGATGAGGCTGTGCTCGTTAA
CCCGCGTATCGTTGCCATGGGGAAGGGGAAAGTTATCGACGAGGAGGGGT
GCTTGTCGTTTCCCGGGATGAGGGGTAACTCCCAGGGGGGGGACTCGCGA
AATTGGCTGGATGAGGCTGTGCTCGTTAACCCGCGTATCGTTGCCATGGG
GAAGGGGAAAGTTATCGACGAGGAGGGGTGCTTGTCGTTTCCCGGGATGA
GGGGTAACGTGGAGAGGAACAACTGGGTGAAGGTGGAAGCGCAGAACGCC
AAGGGGAAGAAGATAAAGAAGAAGTACACCGACTGGACAGCGAGGATATT
TCAGGTGGAGAGGAACAACTGGGTGAAGGTGGAAGCGCAGAACGCCAAGG
GGAAGAAGATAAAGAAGAAGTACACCGACTGGACAGCGAGGATATTTCAG
CACGAGTACGATCACCTGGATGGCACGGTGTACATCGATCGTTTGACTCC
TGAGGGGAGAAAGAAGGTGCACGAGTACGATCACCTGGATGGCACGGTGT
ACATCGATCGTTTGACTCCTGAGGGGAGAAAGAAGGTG
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