mRNA_H-elongata_contig20101.5664.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig20101.5664.1
Unique Name	mRNA_H-elongata_contig20101.5664.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A2V3IIC5_9FLOR (Peptide deformylase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIC5_9FLOR)

HSP 1 Score: 57.0 bits (136), Expect = 1.460e-8
Identity = 26/34 (76.47%), Postives = 29/34 (85.29%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNPGERERAL 102
            +VMYAS GVGLAAPQVG+NKRLMVFNP   +RA 
Sbjct:  106 RVMYASRGVGLAAPQVGINKRLMVFNPEGEQRAF 139

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: R7QRS0_CHOCR (Peptide deformylase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QRS0_CHOCR)

HSP 1 Score: 56.2 bits (134), Expect = 2.900e-8
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 1

Query:    4 VMYASNGVGLAAPQVGVNKRLMVFNP-GERERALK 105
            VMYAS GVGLAAPQVGVNKRLMVFNP GE +  LK
Sbjct:  111 VMYASRGVGLAAPQVGVNKRLMVFNPDGESKAFLK 145

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A8J6CDU3_DIALT (Peptide deformylase n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CDU3_DIALT)

HSP 1 Score: 55.8 bits (133), Expect = 3.750e-8
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNPGERERALKA 108
            ++MYAS GVGLAAPQVGVNKRL+VFNP   ER + A
Sbjct:  106 RMMYASKGVGLAAPQVGVNKRLLVFNPEGDERKMSA 141

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A4D9D349_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D349_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 1.160e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNP-GERERAL 102
            +VMYA NGVGLAAPQVGVN+RLMVFNP G+R + L
Sbjct:   48 KVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWL 82

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A7S4PNI0_GUITH (Peptide deformylase n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PNI0_GUITH)

HSP 1 Score: 54.3 bits (129), Expect = 1.610e-7
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1

Query:    4 VMYASNGVGLAAPQVGVNKRLMVFNP-GERERALK 105
            VMYAS GVGLAAPQVG+NKR+MVFNP G++++ L+
Sbjct:  130 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQ 164

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A7S0E2U1_9CRYP (Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0E2U1_9CRYP)

HSP 1 Score: 54.3 bits (129), Expect = 1.630e-7
Identity = 25/35 (71.43%), Postives = 32/35 (91.43%), Query Frame = 1

Query:    4 VMYASNGVGLAAPQVGVNKRLMVFNP-GERERALK 105
            VMYAS GVGLAAPQVG+NKR+MVFNP G++++ L+
Sbjct:  134 VMYASRGVGLAAPQVGINKRIMVFNPEGDKKKWLQ 168

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: Q2IA88_ISOGA (Peptide deformylase (Fragment) n=1 Tax=Isochrysis galbana TaxID=37099 RepID=Q2IA88_ISOGA)

HSP 1 Score: 53.5 bits (127), Expect = 1.870e-7
Identity = 24/32 (75.00%), Postives = 30/32 (93.75%), Query Frame = 1

Query:    4 VMYASNGVGLAAPQVGVNKRLMVFNP-GERER 96
            +MYAS GVGLAAPQ+G+NKRLMVFNP G++E+
Sbjct:  118 IMYASRGVGLAAPQLGINKRLMVFNPEGKKEK 149

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A0G4FVR9_VITBC (Peptide deformylase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4FVR9_VITBC)

HSP 1 Score: 53.9 bits (128), Expect = 2.020e-7
Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNPGERER 96
            ++MYA+ GVGLAAPQVG+NKRLMVFNP  R R
Sbjct:  113 KLMYAAGGVGLAAPQVGINKRLMVFNPSGRMR 144

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: W7U6W2_9STRA (Peptide deformylase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U6W2_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.150e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNP-GERERAL 102
            +VMYA NGVGLAAPQVGVN+RLMVFNP G+R + L
Sbjct:  131 KVMYAMNGVGLAAPQVGVNQRLMVFNPQGDRLKWL 165

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BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Match: A0A5J4YYA4_PORPP (Peptide deformylase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YYA4_PORPP)

HSP 1 Score: 53.1 bits (126), Expect = 2.470e-7
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1

Query:    1 QVMYASNGVGLAAPQVGVNKRLMVFNP 81
            +VMYAS GVGLAAPQVGVNKR+MVFNP
Sbjct:   56 KVMYASRGVGLAAPQVGVNKRVMVFNP 82

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot

BLAST of mRNA_H-elongata_contig20101.5664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IIC5_9FLOR	1.460e-8	76.47	Peptide deformylase n=1 Tax=Gracilariopsis chorda ...	[more]
R7QRS0_CHOCR	2.900e-8	82.86	Peptide deformylase n=1 Tax=Chondrus crispus TaxID...	[more]
A0A8J6CDU3_DIALT	3.750e-8	72.22	Peptide deformylase n=1 Tax=Diacronema lutheri Tax...	[more]
A0A4D9D349_9STRA	1.160e-7	77.14	Peptide deformylase n=1 Tax=Nannochloropsis salina...	[more]
A0A7S4PNI0_GUITH	1.610e-7	71.43	Peptide deformylase n=1 Tax=Guillardia theta TaxID...	[more]
A0A7S0E2U1_9CRYP	1.630e-7	71.43	Peptide deformylase n=1 Tax=Hanusia phi TaxID=3032...	[more]
Q2IA88_ISOGA	1.870e-7	75.00	Peptide deformylase (Fragment) n=1 Tax=Isochrysis ...	[more]
A0A0G4FVR9_VITBC	2.020e-7	75.00	Peptide deformylase n=1 Tax=Vitrella brassicaformi...	[more]
W7U6W2_9STRA	2.150e-7	77.14	Peptide deformylase n=1 Tax=Nannochloropsis gadita...	[more]
A0A5J4YYA4_PORPP	2.470e-7	88.89	Peptide deformylase n=1 Tax=Porphyridium purpureum...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig20101	contig	H-elongata_contig20101:1398..1508 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	no signal peptide or anchor
Exons	1
Model size	111
Cds size	105
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930131.6369689-UTR-H-elongata_contig20101:1397..1403	1622930131.6369689-UTR-H-elongata_contig20101:1397..1403	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig20101 1398..1403 +
1691679292.9124136-UTR-H-elongata_contig20101:1397..1403	1691679292.9124136-UTR-H-elongata_contig20101:1397..1403	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig20101 1398..1403 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930131.665059-CDS-H-elongata_contig20101:1403..1508	1622930131.665059-CDS-H-elongata_contig20101:1403..1508	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20101 1404..1508 +
1691679292.9230027-CDS-H-elongata_contig20101:1403..1508	1691679292.9230027-CDS-H-elongata_contig20101:1403..1508	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig20101 1404..1508 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig20101.5664.1	prot_H-elongata_contig20101.5664.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig20101 1404..1508 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig20101:1398..1508+
coding sequence from alignment at H-elongata_contig20101:1398..1508+

protein sequence of mRNA_H-elongata_contig20101.5664.1

>prot_H-elongata_contig20101.5664.1 ID=prot_H-elongata_contig20101.5664.1|Name=mRNA_H-elongata_contig20101.5664.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=35bp
MYASNGVGLAAPQVGVNKRLMVFNPGERERALKA*

mRNA from alignment at H-elongata_contig20101:1398..1508+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig20101.5664.1 ID=mRNA_H-elongata_contig20101.5664.1|Name=mRNA_H-elongata_contig20101.5664.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=111bp|location=Sequence derived from alignment at H-elongata_contig20101:1398..1508+ (Himanthalia elongata Himel1 dioecious)
CAGGTGATGTACGCGTCGAACGGGGTGGGGCTCGCGGCGCCTCAGGTCGG
CGTCAACAAACGTCTCATGGTTTTCAACCCGGGTGAGAGAGAAAGAGCTC
TGAAGGCCTGA

Coding sequence (CDS) from alignment at H-elongata_contig20101:1398..1508+

>mRNA_H-elongata_contig20101.5664.1 ID=mRNA_H-elongata_contig20101.5664.1|Name=mRNA_H-elongata_contig20101.5664.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=210bp|location=Sequence derived from alignment at H-elongata_contig20101:1398..1508+ (Himanthalia elongata Himel1 dioecious)
ATGTACGCGTCGAACGGGGTGGGGCTCGCGGCGCCTCAGGTCGGCGTCAA
CAAACGTCTCATGGTTTTCAACCCGGGTGAGAGAGAAAGAGCTCTGAAGG
CCTGAATGTACGCGTCGAACGGGGTGGGGCTCGCGGCGCCTCAGGTCGGC
GTCAACAAACGTCTCATGGTTTTCAACCCGGGTGAGAGAGAAAGAGCTCT
GAAGGCCTGA