mRNA_H-elongata_contig200920.5661.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig200920.5661.1
Unique NamemRNA_H-elongata_contig200920.5661.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig200920.5661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig200920contigH-elongata_contig200920:70..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size306
Cds size231
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig200920.5661.1prot_H-elongata_contig200920.5661.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig200920 70..454 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930131.3398252-CDS-H-elongata_contig200920:69..1981622930131.3398252-CDS-H-elongata_contig200920:69..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200920 70..198 -
1691679292.7122588-CDS-H-elongata_contig200920:69..1981691679292.7122588-CDS-H-elongata_contig200920:69..198Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200920 70..198 -
1622930131.3598657-CDS-H-elongata_contig200920:352..4541622930131.3598657-CDS-H-elongata_contig200920:352..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200920 353..454 -
1691679292.721607-CDS-H-elongata_contig200920:352..4541691679292.721607-CDS-H-elongata_contig200920:352..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig200920 353..454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930131.3731654-UTR-H-elongata_contig200920:454..5281622930131.3731654-UTR-H-elongata_contig200920:454..528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200920 455..528 -
1691679292.7297409-UTR-H-elongata_contig200920:454..5281691679292.7297409-UTR-H-elongata_contig200920:454..528Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig200920 455..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig200920.5661.1

>prot_H-elongata_contig200920.5661.1 ID=prot_H-elongata_contig200920.5661.1|Name=mRNA_H-elongata_contig200920.5661.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
MGSIRSHPRCHRCSSRQPVIDVLCLAVYTLRVIKGGVIKLIPFSRAWFSS
LYLMCIKTCVFVFLVLGLAVYTLRAIK
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mRNA from alignment at H-elongata_contig200920:70..528-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig200920.5661.1 ID=mRNA_H-elongata_contig200920.5661.1|Name=mRNA_H-elongata_contig200920.5661.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at H-elongata_contig200920:70..528- (Himanthalia elongata Himel1 dioecious)
GAGCAGGACTTCAGGAATCATCGAGTGTTTTGTCAATCAGTTGCGTGTTG
TGCTCGTAGTCAGCTCCGGCATAGATGGGCAGTATCAGGTCACACCCTCG
GTGTCATCGGTGCAGTTCGCGGCAGCCCGTGATCGACGTGCTTTGTTTAG
CAGTTTATACCTTACGTGTGATCAAGGTTTATGAGTTTATACCCTTCTTC
TCGTGGTTGGTTTAGCAGTTTGTACCTTACGTGTTATCAAGATAGTGTTC
TGTCTTAAGTGTGTTTCTGTTTCTCTTGTACTGGGTTTAGCAGTTTATAC
CCTTACGTGTTATCAAGGTAGTCTCATCAGGGTGGTGTTATTAAGCTTAT
ACCTTTTTCTCGTGCTTGGTTCAGCAGTCTATACCTCATGTGCATCAAGA
CATGTGTTTTTGTTTTTCTCGTGCTTGGTTTAGCAGTTTATACCCTACGT
GCTATCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig200920:70..528-

>mRNA_H-elongata_contig200920.5661.1 ID=mRNA_H-elongata_contig200920.5661.1|Name=mRNA_H-elongata_contig200920.5661.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig200920:70..528- (Himanthalia elongata Himel1 dioecious)
ATGGGCAGTATCAGGTCACACCCTCGGTGTCATCGGTGCAGTTCGCGGCA
GCCCGTGATCGACGTGCTTTGTTTAGCAGTTTATACCTTACGTGTGATCA
AGATGGGCAGTATCAGGTCACACCCTCGGTGTCATCGGTGCAGTTCGCGG
CAGCCCGTGATCGACGTGCTTTGTTTAGCAGTTTATACCTTACGTGTGAT
CAAGGGTGGTGTTATTAAGCTTATACCTTTTTCTCGTGCTTGGTTCAGCA
GTCTATACCTCATGTGCATCAAGACATGTGTTTTTGTTTTTCTCGTGCTT
GGTTTAGCAGTTTATACCCTACGTGCTATCAAGGGTGGTGTTATTAAGCT
TATACCTTTTTCTCGTGCTTGGTTCAGCAGTCTATACCTCATGTGCATCA
AGACATGTGTTTTTGTTTTTCTCGTGCTTGGTTTAGCAGTTTATACCCTA
CGTGCTATCAAG
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