mRNA_H-elongata_contig20091.5659.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D7FI37_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI37_ECTSI) HSP 1 Score: 207 bits (527), Expect = 9.720e-53 Identity = 105/194 (54.12%), Postives = 140/194 (72.16%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLA---PNSGMQGSGEDDVTSALLTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQ----GIDVAGVLRHSLDFFTQGGKCENGMIMAS 561
VKP SVLSR+FTSKDTHSP GDLLV ++ S+ YHD L+R+++ +LGFEAP+FT GTDLMLP AN LR+ L + G+QG G+ D AL K D S +PQ+LAAVAYS++TPG+WF++P+ WV ++LFK ASIW+IPL+KPRF+C++ A++ A L+ S+DFF GGKC NG+I A+
Sbjct: 1614 VKPGSVLSRSFTSKDTHSPRGDLLVVHAGSQGSYHDTELSRRSASVLGFEAPSFTQGTDLMLPGDANYYLREALGLKIGSDGLQGDGDGDAVIAL-QKFVDFDQVSAVPQVLAAVAYSRETPGVWFIDPRGWVGQNLFKEASIWDIPLVKPRFTCTIAADKLDSASPKTAETLQSSVDFFANGGKCANGLIAAA 1806
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D7FI63_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI63_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.680e-51 Identity = 102/189 (53.97%), Postives = 135/189 (71.43%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSAL-LTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQ----GIDVAGVLRHSLDFFTQGGKCENGMI 552
V+P SVLSR FTSKDTHSP GDLLV ++ S+ YHD L R+++ +LGF+AP+FT GTDLMLPVGAN DLR+ L G + D S + L +L + D S +PQ+LAA+AYS+ TPG+WF++PQ WV +HLF+ ASIW IPL+KPR++C++ Q A VL+ +LDFF+ GGKC NG+I
Sbjct: 1268 VEPGSVLSRPFTSKDTHSPRGDLLVVHTGSQGSYHDAQLRRRSASVLGFDAPSFTHGTDLMLPVGANEDLRESLGLRHGASLQHDGDWASMVALQELVEFDQFSAVPQVLAALAYSRDTPGVWFLDPQAWVGQHLFQEASIWNIPLVKPRYTCAIAPAQLEPGSPKTAEVLQSNLDFFSMGGKCANGLI 1456
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D7FI39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI39_ECTSI) HSP 1 Score: 197 bits (502), Expect = 1.450e-49 Identity = 99/189 (52.38%), Postives = 134/189 (70.90%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSAL-LTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQ----GIDVAGVLRHSLDFFTQGGKCENGMI 552
V+P SVLSR FTSKDTHSP DLLV Y+ S+ YHD L +++ +LGF+AP+FT GTDLMLPVG N LR+ L G + D S + L +L D S +PQ+LAA+AYS++TPG+WFV+PQ WV ++LFK ASIW++PL+KPR++C++ Q + A VL+ +LDFF++GGKC NG+I
Sbjct: 1324 VEPGSVLSRPFTSKDTHSPRSDLLVVYTGSQGSYHDAQLRSRSASVLGFDAPSFTHGTDLMLPVGTNEALRESLGLRHGASLQHDGDGASLIALQELVGFDQVSAVPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYTCAIAPVQLEPGSPNTAEVLQSNLDFFSKGGKCANGLI 1512
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: A0A6H5L4M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M7_9PHAE) HSP 1 Score: 194 bits (493), Expect = 4.880e-49 Identity = 98/189 (51.85%), Postives = 133/189 (70.37%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSAL-LTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQ----GIDVAGVLRHSLDFFTQGGKCENGMI 552
V+P SVLSR FTSKDTHSP GDLLV ++ S YHD L +++ +LGF+AP+FT GTDLMLP+G N LR+ L G + D S + L +L D S +PQ+LAA+AYS++TPG+WFV+PQ WV ++LFK ASIW++PL+KPR+ C++ Q + A VL+ +LDFF++GGKC NG+I
Sbjct: 635 VEPGSVLSRPFTSKDTHSPRGDLLVVHTGSPGSYHDSQLRSRSASVLGFDAPSFTHGTDLMLPMGTNQALRESLGFRLGASLQHDGDGASLIALEELVGFDRVSALPQVLAALAYSRETPGVWFVDPQAWVGQNLFKEASIWDVPLVKPRYMCAIAPAQLEPGSPNTANVLQSNLDFFSKGGKCANGLI 823
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: A0A6H5LJP6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJP6_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.170e-48 Identity = 101/191 (52.88%), Postives = 135/191 (70.68%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSAL--LTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQGID-----VAGVLRHSLDFFTQGGKCENGMI 552
V+P SVLSR+FT KDTHSP GDLLV ++ S+ YHD L+ ++S +LGFE P+FT GTDLMLP AN +R+ L G +G ED A+ L + D S +PQ+LAAVAYS+KTPG+WFV+P+ WV ++LFK ASIW+IPL+KPRF+C++ A+ +D A VL++S+ FF GGKC NG+I
Sbjct: 924 VRPGSVLSRSFTPKDTHSPRGDLLVVHAGSQGSYHDTELSHRSSSVLGFETPSFTQGTDLMLPGDANYYVREALGLKIGSEGLQEDRDGDAVIALQEFVYFDQVSAVPQVLAAVAYSRKTPGVWFVDPRGWVGQNLFKEASIWDIPLVKPRFTCTI-ASDKLDSSSPKTAQVLQNSVVFFANGGKCANGLI 1113
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D8LLE5_ECTSI (Imm upregulated 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLE5_ECTSI) HSP 1 Score: 189 bits (479), Expect = 9.670e-48 Identity = 98/187 (52.41%), Postives = 124/187 (66.31%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSALLTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLD---ANQGIDVAGVLRHSLDFFTQGGKCENGMI 552
+K SV+SR+FTSKDTHSP GDLLV + H LA +T+ +LGFEAP FT GTDL+LPVGANADLR LA + D A+ + + D + +PQMLAA+ Y + PG+WF NPQ WV+ HLF+ ASIWEIPL+KPRF+C LD + DVA +L+ +LDFF GG CE G+I
Sbjct: 511 LKTGSVVSRSFTSKDTHSPQGDLLVVFGKG----HSGDLADRTANVLGFEAPPFTTGTDLILPVGANADLRAALASEKTVN-----DAVGAI-EDVFDLGDTAAVPQMLAALQYKRAAPGIWFFNPQEWVTNHLFQTASIWEIPLVKPRFTCELDHVSSADESDVADILQRNLDFFAMGGTCERGVI 687
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: A0A6H5JSN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN3_9PHAE) HSP 1 Score: 186 bits (473), Expect = 6.310e-46 Identity = 96/187 (51.34%), Postives = 125/187 (66.84%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSALLTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQG---IDVAGVLRHSLDFFTQGGKCENGMI 552
+K SV+SR+FTSKDTHSP GDLLV + H +A +T+ +LGFEAP FT GTD++LPVGANA+LR LA + DD A+ + + D + +PQMLAA+ Y + PG+WF NPQ WV+ HLF+ ASIWEIPL+KPRF+C LD + DVA +L+ +LDFF GG CE G+I
Sbjct: 1025 LKTGSVVSRSFTSKDTHSPQGDLLVVFGKG----HHGDVADRTTDVLGFEAPPFTTGTDVILPVGANAELRAALASEKTV-----DDAVGAI-EDVFDLGDTAAVPQMLAALQYKRAAPGIWFFNPQEWVTSHLFQDASIWEIPLVKPRFTCELDPSSSADEFDVADILQRNLDFFAMGGTCEAGVI 1201
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D7FI38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI38_ECTSI) HSP 1 Score: 183 bits (464), Expect = 7.680e-46 Identity = 95/193 (49.22%), Postives = 132/193 (68.39%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSAL--LTKLGKIDDESTIPQ----MLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDANQGIDV---AGVLRHSLDFFTQGGKCENGMI 552
V+ SVLSR FTSKDTHSP GDLLV + + Y D +R++ ++LG EAP+FT GTDL+LPVGAN DLR L D V +A+ LT+ ++ S +PQ MLAA+AY++ TPG+WF +P+ WV +HLF+ ASIW+IPL+KPRF+C++ D+ A L+++LDFF++GGKCE+G+I
Sbjct: 470 VELGSVLSRPFTSKDTHSPRGDLLVVHRGGQGSYRDDERSRRSGLVLGLEAPSFTRGTDLVLPVGANKDLRGSLGMEMHADSVRRDGVGAAVMALTEPADFEEVSAVPQARNRMLAALAYARNTPGVWFGDPKVWVGQHLFQEASIWDIPLVKPRFTCAIALALEPDILRAATTLQNNLDFFSRGGKCEDGLI 662
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: A0A6H5L131_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L131_9PHAE) HSP 1 Score: 177 bits (450), Expect = 1.100e-43 Identity = 92/193 (47.67%), Postives = 127/193 (65.80%), Query Frame = 1
Query: 1 VKPRSVLSRAFTSKDTHSPMGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSALLTKLGKIDDE--STIPQ----MLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLDAN---QGIDVAGVLRHSLDFFTQGGKCENGMI 552
V+P SVLSR FT KDTHSP GDLLV + + Y + +R++ ++LG EAP+FT GTDLMLPVGAN DLR+ L D +A+ +D E S++PQ MLAA+AY++ TPG+WF +PQ W + LF+ ASIW+IPL KPRF+C++ + A L+++LDFF++GGKCE+G+I
Sbjct: 528 VEPGSVLSRPFTFKDTHSPRGDLLVVHGGGQGSYRNDERSRRSGLVLGLEAPSFTRGTDLMLPVGANKDLRESLGMEMQADSVRRDGDGAAVTALAEPVDFEEVSSVPQARNRMLAALAYARNTPGVWFGDPQVWSGQRLFQEASIWDIPLAKPRFTCAIALTLEPDSLHAATTLQNNLDFFSRGGKCEDGLI 720
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Match: D7FR80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR80_ECTSI) HSP 1 Score: 173 bits (439), Expect = 1.100e-41 Identity = 94/207 (45.41%), Postives = 123/207 (59.42%), Query Frame = 1
Query: 13 SVLSRAFTSKDTHSPMGDLLVAYSDS-RLCYHDYALARQTSMILGFEA-----------PTFTCGTDLMLPVGANADLRDVLAPNSGMQGSGEDDVTSALLTKLGKIDDESTIPQMLAAVAYSKKTPGMWFVNPQTWVSEHLFKAASIWEIPLMKPRFSCSLD---------------ANQGIDVAGVLRHSLDFFTQGGKCENGMI 552
S SR TSKDTHSP GDLLVA+S S R +H LA+QT+ +L P+FT GTDLMLPVGANADLRD+ A G+ + L +DD + +PQ LAA+ YS++ G+WF++PQ W+SE+LFK SIW+IPL+KPRF+C++D +VA VL+ LDFF++GG C NG I
Sbjct: 808 STFSRPLTSKDTHSPRGDLLVAHSSSARASHHVAQLAKQTASVLALSEGSAAPPTVPLPPSFTFGTDLMLPVGANADLRDLFA------SKGDKAAFQQAVQTLAGLDDLAAVPQALAALQYSRQPEGVWFLDPQAWISEYLFKEVSIWDIPLVKPRFTCAVDPALLRNHDSAGPTRGGRSSFEVAQVLQDGLDFFSKGGTCSNGQI 1008 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig20091.5659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig20091.5659.1 >prot_H-elongata_contig20091.5659.1 ID=prot_H-elongata_contig20091.5659.1|Name=mRNA_H-elongata_contig20091.5659.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=170bp MGDLLVAYSDSRLCYHDYALARQTSMILGFEAPTFTCGTDLMLPVGANADback to top mRNA from alignment at H-elongata_contig20091:3795..6006+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig20091.5659.1 ID=mRNA_H-elongata_contig20091.5659.1|Name=mRNA_H-elongata_contig20091.5659.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2212bp|location=Sequence derived from alignment at H-elongata_contig20091:3795..6006+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig20091:3795..6006+ >mRNA_H-elongata_contig20091.5659.1 ID=mRNA_H-elongata_contig20091.5659.1|Name=mRNA_H-elongata_contig20091.5659.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1020bp|location=Sequence derived from alignment at H-elongata_contig20091:3795..6006+ (Himanthalia elongata Himel1 dioecious)back to top |